BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59550.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496089 jgi|Araly1|496089|fgenesh2_kg.8__1905__AT5G59550.1 2074 0.0
> Ahg496089 jgi|Araly1|496089|fgenesh2_kg.8__1905__AT5G59550.1
Length=1367
Score = 2074 bits (1123), Expect = 0.0
Identities = 1299/1383 (94%), Gaps = 16/1383 (1%)
Strand=Plus/Plus
Query 149 ATGCCGTCAACGCCGACGACGCCGACTACAACAACGCCGATCACGGCTTCGTATTGGTGT 208
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGTCAACGCCGACGACGACGTCTACAACAACGCCGATCACGGCTTCGTATTGGTGT 60
Query 209 TACAGCTGTACGCGTTTCGTCAGCGTTTGGGCTGATCAAGGCACAACAACCGTCGGTAGC 268
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 61 TATAGCTGTACGCGTTTCGTCAGCGTTTGGGCTGATCAAGGCACAGCCACCGTCGGTGGC 120
Query 269 GTCGCTTGCCCTCACTGCGACGGCGGTTTTATCGAACAGATTAACGATTCTTCCTCCGCC 328
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GTCGCTTGTCCTCACTGCGACGGCGGTTTTATCGAAGAGATTAACGATTCTTCCTCCGCC 180
Query 329 GCTACCGAATTAACGATTCCGGCTTCTACTGAAGTAAGATCGATCAATAACAACCGTAGA 388
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GCTACCGAATTAGCGATTCCGGCTTCTACTGAAGTAAGATCGATTAATAACAACCGTAGA 240
Query 389 TCCGTGATTAGACGCCGGAGATCCGGTCGTCGTCCGTCCTTTAATCCGGTCATCGTACTT 448
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TCCGTGATTAGACGCCGGAGATCCGGTCGTCGTCCGTCGTTTAATCCGGTCATCGTACTC 300
Query 449 CAAGGAGGCGCCGGCGAGAGAGAAGAGGGAGAAGAAGGAGATGCGGCTAGAGATCGACGC 508
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CAAGGAGGCGCCGGCGAGAGAGAAGATGGAGAAGAAGGAGATGCGGCTAGAGATCGACGC 360
Query 509 GCTTTTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCT 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTTTTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCT 420
Query 569 GTATCTGAGATCTTGATGGGATCTGGATTCGAGCGGTTACTTGAACAGCTAAGCCAAATC 628
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 421 GTATCTGAGATCTTGATGGGATCTGGATTTGAGCGGTTACTCGAACAGCTAAGCCAGTTC 480
Query 629 GAAGCGTCGGCTACTGGAATTGGTAGATCTGGAAACCCTCCGGCGTCTAAATCGGCGATT 688
||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 GAAGCGTCGGCCACCGGAATCGGTAGATCTGGAAATCCTCCGGCGTCGAAATCGGCGATT 540
Query 689 GAGTCTTTACCTAGAGTCGAAATCTCGGATTGCCACATAGGCTCGGAGGCTAATTGCGCT 748
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 541 GAGTCTTTACCTAGAGTCGAAATCTCTGATTGTCACATAGCCTCGGAGGCTAATTGCGCT 600
Query 749 GTTTGCACGGAGATTTTCGAGACGGAGACGGAGGCGCGTGAGATGCCGTGTAAACACCTT 808
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 601 GTTTGCACGGAGATTTTCGAGGCGGAGACGGAGGCACGTGAGATGCCGTGTAAACACCTC 660
Query 809 TTCCACGACGATTGCATCGTACCGTGGCTATCGATTCGAAACTCTTGTCCCGTGTGCAGA 868
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 661 TTCCACGACGATTGCATCGTGCCTTGGCTATCGATTCGAAACTCTTGCCCCGTGTGCAGA 720
Query 869 TTCGAGCTACCTTCAGAGCCTAATCGACGGAGCAACAACAACGAGGAGGATAACGCCGTG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCGAGCTACCTTCAGAGCCTAATCGACGGAGCAACAACAACGAGGAGGATAACGCCGTG 780
Query 929 GGGATGACGATTTGGAGACTTCCCGGTGGTGGATTCGCCGTAGGGAGGTTTAACGCAGCA 988
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 781 GGGATGACAATTTGGAGACTCCCCGGTGGTGGATTCGCCGTCGGGAGGTTTAACGCCGCA 840
Query 989 ATGAGAGACGGAGAGAGAGTTTTGCCAGTGGTGTTAACAGAAATGGATGGTGGTGGGATT 1048
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 841 ATGAGAGACGGAGAGAGAGTTTTACCTGTGGTGTTAACAGAAATGGACGGTGGTGGGATT 900
Query 1049 GGTAATAGCCAGGATGGTCCTAGACGGATCTCATGGGTTAGGTCACACGGTACACTCGAA 1108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGTAATAGCCAGGACGGTCCTAGACGGATCTCATGGGTTAGGTCACACGGTACACTCGAA 960
Query 1109 TCGGATAGTAACGGTACTGGCTCAGGTTCCGGCTCCGGTGGAAGATTGAGGAGGATGGTT 1168
|||||||| |||||| |||||| ||| | |||||||| || |||||||| |||||||||
Sbjct 961 TCGGATAGCAACGGTGGTGGCTCCGGTACTGGCTCCGGCGGTAGATTGAGAAGGATGGTT 1020
Query 1169 CGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAACCGTAGCTCTTCTTCTTCATCA 1228
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1021 CGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAATCGTAGCTCTTCTTCATC-T-- 1077
Query 1229 GCTGCGATATCAACTTCTTCTGATAATCTGGATTTGAACATTGAAGTAGAATCTAGGGTT 1288
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GCTGCAATTTCATCTTCTTCTGATAATCTGGATTTGAACATTGAAGTAGAATCTAGGGTT 1137
Query 1289 TTGGATAGGTCAAATTCAGTGATGAGAAGATACTTCAGAAGAAACAGAAGTAACAGGGAT 1348
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1138 TTGGATAGGTCGAATTCAGTGATGAGAAGATACTTCAGGAGAAACAGAAGTAACAGAGAT 1197
Query 1349 TCTTCGTCTTCAGTTCTTCATTGATTCAGAAatatatatatatTATTTTTTGGTTTGTTC 1408
||||| ||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||
Sbjct 1198 TCTTCTTCTTCGGTTCTTCATTGATTGAGAACTATATATAT-T-ATTTTTTGGTTTGTTC 1255
Query 1409 ATTCAACAATGTAAATATAAGATTCAGAAGAAAAAGATTGGTGCTTCGTTTTCTATTATC 1468
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 ATTCAACAATGTAAATATAAAATTCAGAAGAAAAAGATTGGTGCTTCGTTTTCTGTTATT 1315
Query 1469 AATTCGATTAATTCTTCCTTATGTTGTTACATCAAAATGTATAATGTTCATATAGAAGTG 1528
| | | | | ||| ||||||| |||||||||||| |||||||| || |||||||
Sbjct 1316 A-T-C-A--A-TTCGA--TTATGTT---ACATCAAAATGTCTAATGTTCGTAAAGAAGTG 1364
Query 1529 TTC 1531
|||
Sbjct 1365 TTC 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5