BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59560.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950700 jgi|Araly1|950700|scaffold_802587.1 1301 0.0
> Ahg950700 jgi|Araly1|950700|scaffold_802587.1
Length=877
Score = 1301 bits (704), Expect = 0.0
Identities = 822/879 (94%), Gaps = 8/879 (1%)
Strand=Plus/Plus
Query 220 CCAGTTTCTTGTGGAAGCTTCAATGGAA-ACGACTGTTAAAAACTCAAGCAGTGATGGTG 278
|||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 1 CCAGTTTCTTGTCGAAGCTTCAATGGAAGA-AACGGTTAAAAACTCAAGCAGTGATGGTG 59
Query 279 AGTGGAAAGTAGTCTTACCTAGTaaaggaagacaaggaagaa-gaagaaaaccgaaacct 337
|||||| ||| || |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 60 AGTGGACAGTGGTTTTACCTAGTAAAGGAAGACAAGGAAGAAGGAA-AAAACCGAAACCT 118
Query 338 aaaggtcaagcagaagaagaagaGCAACCATGGAAATCAGATGATCTTGAAATTGATCCA 397
||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 AAAGGTCCAGCAGAAGACGAAGAGCAACCATGGAAATCTGATGATCTTGAAATTGATCCG 178
Query 398 CAGAGACAAGCAAGACTAAAGCAGAAGATGGAAATCTCTCTGAAGAAAATCGAAAGCTCG 457
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 179 GAGAGACAAGCAAGACTAAAGCAGAAGATGGAAATCTCTTTGAAGAAAATCGAGAGCTCG 238
Query 458 -AGTTTTTACACAGCATTCTTGGAGCAGCTTAAGTCTCCTGAGGTTTCGA-ATCAGATTC 515
|| |||||| |||||||||| |||||||||||||||||||||||||| | | |||||||
Sbjct 239 AAG-TTTTACGCAGCATTCTTAGAGCAGCTTAAGTCTCCTGAGGTTTC-AGACCAGATTC 296
Query 516 GCCTCGTGTTAGGGTCTGAAACACAGTTGCAGATGGTGATGTACGGTATAGGTAGCATTG 575
| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 297 GACTCGTGTTAGGCAATGAAACACAGTTGCAGATGGTGATGTATGGTATAGGCAGCATTG 356
Query 576 AGTCTTATGAATCTCCGAGGTTTCAGCTGAGCATTGCAATCTTGATGAAGAGAGAGTTTG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGTCTTATGAATCTCCGAGGTTTCAGCTGAGCATTGCAATCTTGATGAAGAGAGAGTTTG 416
Query 636 ATTGGGTTGGTGATAACATTGAAGTGTTTGACCCAGTTCTCTCTGCAACTGAATCTAGTT 695
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 417 ATTGGGTTGGTGATAACATTGAAGTGTTTGATCCAGTTCTCTCTGCAACTGAATCTTGTT 476
Query 696 ACCTAGAATCTTTGGGATGCAGTGTTCTATCTGTGAATGAGCAAGCTCGTAGGGAAGCTT 755
| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 477 TCTTAGAATCTTTGGGATGCACTGTTCTATCTGTGAATGAGCAAGCTCGTCGAGAAGCTT 536
Query 756 TAAAGCCTACTCTTTTCTTCATGCCACACTGTGAGGCCAATCTATACAGCAACCTATTGC 815
||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 537 TAAGGCCTACTCTTTTCTTTATGCCACACTGTGAGGCCAATTTATACGGCAACCTATTGG 596
Query 816 AAGCAAATTGGAGAATGGATCGACTGTCGAAAATCGCATTGTTTGGGAACAGCTTTCAGA 875
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 597 AAGCAAATTGGAGAATGGATCGATTGTCTAGAATCGCATTGTTTGGGAACAGCTTTCAGA 656
Query 876 TGTATGAGGAGCAAGTTTCATTTGACGCAGAAGTCATCTGTGCTACCAAACGAATCATAG 935
||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 657 TGTATGAGGAGCAAGTTTCGTTTGACCCAGAAGTCATCTGTGCCACCAAACGAATCATAG 716
Query 936 CTGCACAAAGAGTCACAAGCGAGTTTGCTATTGAGACGGAATCAGATGATTATTTTGCAG 995
|||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 717 CTGCACAAAGTGTCACAAGCGAGTTTGCTATTGAGACGGTATCAGAAGATTATTTTGCAG 776
Query 996 CATTCCATGATTCAAGCTGGCATTTTTTCAGTTCTGGTATAGATTCGGAGCTGCCATTGT 1055
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 CATTCCATGATTCAAGCTGGCATTTTTTCAGTTCTGGTATAGATTCAGAGCTGCCATTGT 836
Query 1056 TCGTTTCAGACTAATTTTAGATCATTGTTTTCAAAAGCT 1094
| |||||||| | ||||||||| |||||||||||||||
Sbjct 837 TGGTTTCAGAGGACTTTTAGATCCTTGTTTTCAAAAGCT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5