BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59570.1
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496092 jgi|Araly1|496092|fgenesh2_kg.8__1908__AT5G59570.1 1478 0.0
Ahg485038 jgi|Araly1|485038|fgenesh2_kg.5__1030__AT3G46640.2 313 3e-84
> Ahg496092 jgi|Araly1|496092|fgenesh2_kg.8__1908__AT5G59570.1
Length=1339
Score = 1478 bits (800), Expect = 0.0
Identities = 1243/1436 (87%), Gaps = 114/1436 (8%)
Strand=Plus/Plus
Query 32 aaaaCTAGGCTCTACGAATTTTCCGGTCACCTTCTCCGATCTCTGATCCGATATTTTTCC 91
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 1 AAAACTAGGCTCTACGAATTTTCCGGTAACCTTCTCCGATCCCTGATCCGATA-TTTTCC 59
Query 92 ACATGTTGTTGAGCTTTAAAGGATTTGAAACCGTTATGAAAGTTATGAAAACGAAGAGTG 151
|||||||||||||||| |||||||||||| |||||| |||| || ||||||||||||| |
Sbjct 60 ACATGTTGTTGAGCTTCAAAGGATTTGAATCCGTTAAGAAATTTGTGAAAACGAAGAGAG 119
Query 152 TGTGAAACATGGGGAAGGAAGTTATGGTGAGCGATTACGGTGACGACGACGGAGAAGACG 211
||||||| |||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 120 TGTGAAAAATGGGGAAGGAAGTTATGATGAGCGATTACGGT---GACGAC------GA-- 168
Query 212 CCGGCGGCGGCGATGAATATAGGATTCCGGAATGGGAAATTGGTTTACCCAACGGAGATG 271
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 169 ----CGGCGGCGATGAAGATAGGGTTCCGGAATGGGAAATTGGATTACCCAACGGAGATG 224
Query 272 ATTTGACTCCGTTATCTCAATATCTAGTCCCGTCGATTCTCGCGTTAGCTTTCAGCATGA 331
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 225 ATTTGACTCCTTTATCTCAATCTCTAGTCCCGTCGATTCTCGCGTTAGCTTTTAGCATAA 284
Query 332 TCCCAGAACGAAGCCGTACAATTCACGACGTCAATCGCGCGTCGCAAATCACGCTCTCTT 391
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 285 TCCCAGAACGGAGCCGTACGATTCACGACGTCAATCGCGCGTCGCAAACCACGCTCTCTT 344
Query 392 CGTTGAGAAGCAGTACCAATGCTTCGTCTGTGATGGAGGAGGTCGTGGATCGAGTTGAAT 451
||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 345 CGTTGCGCAGCAGTGCCAATGCTTCGTCTGTGATGGAGGAGTTCGTGGATCGAGTTGGAT 404
Query 452 CGAGT-GTTCCAGGATCAGATCCGAAGAAACAGAAGAAATCGGATGGTGGTGAAGCAGCG 510
||||| | ||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 405 CGAGTAG-TCCAGGATCAGATCCGAAGAAACAGAAGAAATCAGATGGTGGTG-A--AGCG 460
Query 511 GCGGTGGAGGATTCCACGGCGGAGGAAGGAGACTCCGGGCCTGAAGACGCGTCTGGGAAG 570
|| || | ||||||||| ||||| |||||| ||||||| ||||| ||| ||
Sbjct 461 GC------GG--T----GGCGGAGGAGGGAGATTCCGGGACTGAAGATGCGTCAGGG-AG 507
Query 571 -ACATCGAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTTGTGGACGT 629
|||| |||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 508 AACATTGAAACGGCCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGT 567
Query 630 TGTGGCTCATCTAGGGATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAACGT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 568 TGTGGCTCATCTAGGGATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAATGT 627
Query 690 GGAAGGACTTACTCGTGAGAACGTTGCGTCTCATTTGCAGAAATATAGGCTTTACCTTAA 749
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 628 TGAAGGACTTACTCGTGAGAACGTTGCGTCTCATTTGCAGAAATACAGGCTTTACCTTAA 687
Query 750 ACGGATTCAAGGATTGACGACGGAAGAAGATCCTTATTCGTCGTCGGATCAGCTCTTCTC 809
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 688 ACGGATTCAAGGATTGACGACGGAAGAAGATCCGTA-T--TCGTCGGATCAGCTCTTCTC 744
Query 810 TTCAACGCCGGTTCCTCCACAGAGCTTTC-A-A-GACGGCGGAGGAAGTAACGGAAAGTT 866
|||||||||||||||||||||| |||||| | | ||||||||||||||||||||||| ||
Sbjct 745 TTCAACGCCGGTTCCTCCACAGTGCTTTCAAGACGACGGCGGAGGAAGTAACGGAAAATT 804
Query 867 GGGGGTTCCGGTTCCGGTTCCGTCGATGGTGCCTATTCCAGGCTATGGGAATCAAATGGG 926
||| | |||||||| | | | | | | ||||||||||| ||| |
Sbjct 805 --GGG----GATTCCGGTT-C--C-A--G-G--------A---TATGGGAATCAGATGAG 840
Query 927 TATGCAAGGATATTATCAACAGTATAGTAACCATGGCAATGAATCAAACCAATATATGAT 986
|||||||||| ||||||| |||||| ||| |||||| |||||||||||||||||||||||
Sbjct 841 TATGCAAGGACATTATCATCAGTATCGTAGCCATGGGAATGAATCAAACCAATATATGAT 900
Query 987 GCAGCAGAATAAGTTTGGAACAATGGTGACATATCCTTCTGTTGGTGGTGGTGACGTGAA 1046
||||| |||||||||||||||||||||||| | |||||||| | ||||||| | |
Sbjct 901 GCAGCGGAATAAGTTTGGAACAATGGTGACCTCTCCTTCTG-T--TGGTGGT---G-G-- 951
Query 1047 TGACAAGTAAATGGATCTTAAAGGTCTATAATTTGCTC-TACAGAGAGATACTGGTTCTT 1105
|||| || ||| || | || | || || | | || || | || | | || | ||
Sbjct 952 TGAC--GTGAAT-GA-C---AA-G--TA-AA-TGGATCTTA-A-AG-G-T-CT-ATAATT 993
Query 1106 GGCTTATGGTTTATT-TTCCCA-CTTCATGAG-GTTGTTGTGACTTTTAA-TTCTCCATG 1161
| || | | || || || || ||| || | || |||||||||||||| ||| |||||
Sbjct 994 TGATT-T-GATTCTTGTT-ACAGGTTCTTG-GCGTCGTTGTGACTTTTAATTTC-CCATG 1048
Query 1162 TTTTCCACACAAGTCTTTATTGCCTTTGTATAGAAAATGATTTCGAG-AAAATCACTG-G 1219
||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| | |
Sbjct 1049 TTTTCCACACAAGTCTTCATTGCCTTTGTATAGAAAATGA-CTCGAGAAAAATCAC-GCG 1106
Query 1220 GAAGCT-TGGTATTGTTGGAGGATGAAGCC-TTCTATGAATGATTTAGTTTCC-TACTGT 1276
|||||| | ||||| |||||| |||||||| |||||||||||| ||||||||| ||||||
Sbjct 1107 GAAGCTCT-GTATTATTGGAGAATGAAGCCTTTCTATGAATGAATTAGTTTCCATACTGT 1165
Query 1277 CTCCATTCTTTATGAGGTAATAAAGCCTTCTTTTGCTCATCGCTTGTAGTCTTCTTAAAT 1336
|||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1166 CTCCATTC-TTATGAGGTAGTAAAGCCTTC-TTTGCTCATCGCTTGTAGTCTTCTTAAAT 1223
Query 1337 TCAAGACAGCGTCACATGTTTGTTCGGTTATGTTAATTGTTTCTTTCTTTGGATAATGAA 1396
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 1224 TCAAGACAGCGTCACATGTTTGTTCGGTTTTGTTAATTGTTTCTTTCTTTGGATACTCAA 1283
Query 1397 G-ATAGCATCAGGTC-TCATGTCTCCTCACTTTGATAAATATCTCTTTCATTTATC 1450
| ||||||||||| | || ||| |||||| ||||||||||||||||||||||||||
Sbjct 1284 GTATAGCATCAGGCCCTCGTGTTTCCTCATTTTGATAAATATCTCTTTCATTTATC 1339
> Ahg485038 jgi|Araly1|485038|fgenesh2_kg.5__1030__AT3G46640.2
Length=1438
Score = 313 bits (169), Expect = 3e-84
Identities = 342/421 (81%), Gaps = 29/421 (7%)
Strand=Plus/Plus
Query 439 GATCGAGTTGAATCGAGT-GTTCCAGGATCAGATCCGAAGAAACAGAAGAAATC-G--GA 494
|||||||| | ||||||| | ||| ||||| ||| ||||||| ||||||| ||| | |
Sbjct 441 GATCGAGTCGGATCGAGTAG-TCCTGGATCGGATTCGAAGAAGCAGAAGATATCAGACGG 499
Query 495 TGGTGGT-GAAGCAG-CGGC-G-GTGGA---GGATTCCACGGCGGAGGAAGGAGACTCCG 547
|||||| | || | ||| | ||||| ||| | ||| |||||||||||| || |
Sbjct 500 CGGTGGTGGTGGC-GATGGCGGTGTGGATCCAGATGCGGCGGTGGAGGAAGGAGATTCAG 558
Query 548 GGCCTGAAGACGC-GTCTGGGAAGACATC-GAAACGACCGCGTTTAGTGTGGACACCGCA 605
| ||||||| | |||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 559 GAACTGAAGA-TCTATCTGGGAAAACA-CTGAAACGACCGCGTTTAGTGTGGACACCGCA 616
Query 606 GCTACACAAGAGATTTGTGGACGTTGTGGCTCATCT-AGGGATTAAAAACGCAGTGCCGA 664
||||||||||||||| || |||||||| ||||| || ||| || |||||||| || || |
Sbjct 617 GCTACACAAGAGATTCGTTGACGTTGTTGCTCA-CTTAGGAATCAAAAACGCTGTTCCAA 675
Query 665 AGACGATTATGCAGCTGATGAACGTGGAAGGACTTA-CTCGTGAGAACGTTGCGTCTCAT 723
||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||
Sbjct 676 AGACGATTATGCAGCTGATGAACGTTGAAGGA-TTAACTCGAGAGAACGTTGCGTCTCAT 734
Query 724 TTGCAGAAATATAGGCTTTACCTTAAACGGATTCAAGGATTGACGA-CGGAAGAAGATCC 782
| |||||||||||||||||||| ||| | || || || ||||||| || ||| | |||
Sbjct 735 CTCCAGAAATATAGGCTTTACCTCAAAAGAATGCAGGGGTTGACGAACG-AAG--G-TCC 790
Query 783 TTATTCGTCGTCGGATCAGCTCTTCTCTTCAACGCCGGTTCCTCCACAGAGCTTTCAAGA 842
| | | | |||||| |||||||||||||||| || || |||||||||||||| |||||
Sbjct 791 CTCTGC-T--TCGGATAAGCTCTTCTCTTCAACACCTGTGCCTCCACAGAGCTTCCAAGA 847
Query 843 C 843
|
Sbjct 848 C 848
Score = 93.5 bits (50), Expect = 4e-18
Identities = 79/92 (86%), Gaps = 5/92 (5%)
Strand=Plus/Plus
Query 971 CAAA-CCAATATATGATGCAGCAGAATAAGTTTGGAACAATGGTGACATATCCTTCTGTT 1029
|||| || |||||||||||||||||||||||||||| | |||| | | ||||||||||||
Sbjct 1051 CAAATCC-ATATATGATGCAGCAGAATAAGTTTGGATCCATGGCGTCTTATCCTTCTGTT 1109
Query 1030 GGTGGTGGT-GACGTGAATGACAAGT-AAATG 1059
||||||||| | || |||||| || | |||||
Sbjct 1110 GGTGGTGGTAG-CGCGAATGAGAATTGAAATG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54278599125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5