BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59600.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496095 jgi|Araly1|496095|fgenesh2_kg.8__1911__AT5G59600.1 2643 0.0
> Ahg496095 jgi|Araly1|496095|fgenesh2_kg.8__1911__AT5G59600.1
Length=1872
Score = 2643 bits (1431), Expect = 0.0
Identities = 1733/1874 (92%), Gaps = 40/1874 (2%)
Strand=Plus/Plus
Query 2 TTCGTTCTCTGTCAGATAAAATTGGGAGCTTTTATTACTTCCGTCACTGAAATCTACCAT 61
||||||||||||| ||||||| ||||||| |||| ||| | | | |||||| |||
Sbjct 1 TTCGTTCTCTGTCCGATAAAAATGGGAGC-TTTAATAC-T---T--C---AATCTATCAT 50
Query 62 CAGTAATGCGGGTTTTGATAAAG-TTTGAAGCTTTGATTCTTATCCATGAAGAAACTTAC 120
||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| ||| || |
Sbjct 51 CAGTAATGCGGTTTTTGAT-AAGTTTTGAAGCTTTGATTCTTACCCATGAATAAATTTGC 109
Query 121 CATCGTTCCTAGTTCTTTTCGGTTATTATCAATCGGTTCTTATGTTGAACTCATCGAAGC 180
|| | ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 110 CACCATTCCTTGTTCTGTTCGGTTATTGTCAATCGGTTCTTATGTTGAACTCATCGAAGC 169
Query 181 CAACGGTCGAGATCGACTGTTTTGTAGAGGAAGAGTGCTTCATGCTCATTTAGTGACATC 240
|||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 170 CAACAGTCGAGATCGACTGCTTTGTGGAGGAATAGTGCTTCATGCTCATTTAGTGACATC 229
Query 241 TGGTATTGCTCGCTTGACGAGAATTGCAGCTAAGCTTGTAACTTTTTATGTTGAATGTGG 300
||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 230 TGGGATTGCTCGCTTGACGAGAATTGCTGCTAAGCTTGTATCTTTTTATGTTGAATGTGG 289
Query 301 GAAAGTTCTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GAAAGTTTTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 349
Query 361 TGTTGTCATGATTGGGGCTTGTGCTCGAAATGGGTATTACCAGGAGTCTTTGGATTTCTT 420
||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 350 GGTTGTCATGATTGGGGCTTGTGCTCGATATGGGTGTTACCAGGAGTCTTTGGATATCTT 409
Query 421 CA-GAGAAATGTACAAAGACGGTTTAAAACTTGATGCTTTCATTGTTCCTAGTCTTCTTA 479
|| | |||||| | ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 410 CATG-GAAATGAATAAAGAAGGTTTAAAACTTGATGTTTTCATTGTTCCTAGTCTTCTTA 468
Query 480 AAGCCAGTCGCAATCTGCTTGATAGAGAATTCGGGAAGATGATACATTGTCTTGTGCTGA 539
|||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 469 AAGCCAATCGCAATCTGCTTGATCGAGAATTTGGGAAGATGATACATTGTCTTGTGCTGA 528
Query 540 AGTTTTCGTATGAGTCTGATGCTTTTATAGTTAGCTCGCTTATTGATATGTACTCGAAGT 599
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 529 AGTGTTCGTTTGAGTCTGATGCTTTTATAGGTAGCTCGCTTATTGATATGTACTCGAAGT 588
Query 600 TTGGGGAGGTGGGGAATGCGAGGAAGGTGTTCAG-TGATTTGGGTGAACAGGATTTGGTC 658
| |||||||| | ||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 589 TCGGGGAGGTAGTGAATGCGAGGAAGGTGTTC-GATGATTTGGGTGAACAAGATTTGGTC 647
Query 659 GTGTTCAATGCTATGATCTCTGGTTATGCTAATAATAGCCAAGCAGATGAAGCATTGAAC 718
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 648 GTGTTCAATGCTATGATCTCTGGTTATGCTAACAATAGCCAAGCAGATGAAGCATTGAAC 707
Query 719 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATGTTATCACTTGGAATGCTCTA 778
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 708 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATATTATCACTTGGAATGCTCTA 767
Query 779 ATTTCAGGGTTCTCGCATATGAGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATG 838
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 768 ATTTCAGGGTTCTCGCATATGGGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATA 827
Query 839 TGTTTGGATGGTTACAAGCCCGACGTTGTGTCCTGGACTTCTATTATATCAGGCCTTGTA 898
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 828 TGTTTGGATGGTTACATGCCCGACGTTGTGTCTTGGACTTCTATTATATCAGGCCTTGTA 887
Query 899 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 947
Query 959 TATCCAAACTCTGCTACGATCATAACTCTATTGCCTGCTTGTACCACACTTGCATATATG 1018
||||||||||| |||||||||| |||||| |||||||||||||| ||||||||| |||||
Sbjct 948 TATCCAAACTCAGCTACGATCACAACTCTTTTGCCTGCTTGTACGACACTTGCAAATATG 1007
Query 1019 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGGTTT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1008 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGTTTT 1067
Query 1079 GTTAGAAGTGCTTTGCTTGACATGTACGGCAAATGTGGCTTCATATCAGAAGCAATGATC 1138
|||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 1068 GTTAGAAGTGCTTTGCTTGATATGTATGGGAAATGTGGATTCATATCAGAAGCAATGATC 1127
Query 1139 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTTACTTTCAACTCGATGATCTTCTGTTAT 1198
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1128 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTAACTTTCAACTCGATGATCTTCTGTTAT 1187
Query 1199 GCGAATCACGGGCTCGCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1258
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCAAATCACGGGCTCTCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1247
Query 1259 GAGAAACTCGACCACTTAACATTCACGGCCATCCTCACAGCCTGCAGCCACGCAGGGTTA 1318
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1248 GAGAAACTCGATCACTTAACTTTCACGGCCATCCTCACAGCCTGCAGCCATGCCGGGTTA 1307
Query 1319 ACTGATCTTGGACAAAATTTGTTCCTTTTGATGCAAAACAAGTACAGGATCGTGCCGAGA 1378
||||||||||||||||| ||||||| ||||||||||| ||||||||| |||| ||||||
Sbjct 1308 ACTGATCTTGGACAAAAGTTGTTCCATTTGATGCAAACCAAGTACAGAATCGAGCCGAGG 1367
Query 1379 TTGGAGCATTATGCTTGTATGGTGGATCTTCTCGGCCGAGCAGGGAAGCTTGTTGAGGCC 1438
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1368 TTGGAGCATCATGCTTGTATGGTGGATCTTCTCGGACGAGCAGGGAAGCTTGTTGAGGCC 1427
Query 1439 TATGAGATGATCAAGGCTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1498
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TATGAAATGATCAAGACTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1487
Query 1499 GCTGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTGCAGCAAAGCACTTAGCA 1558
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1488 GGAGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTTCAGCAAAGCACTTAGCA 1547
Query 1559 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACCAGTTTATATGCCAATGCT 1618
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1548 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACAAGTTTATATGCCGATGCT 1607
Query 1619 GGTAGTTGGGAAAGTGTTGTAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1678
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 GGTAGTTGGGAAAATGTTATAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1667
Query 1679 TTTCTAGGCAGCAGCTGGGTAGAAACTGTTTGATCCTAAGACTCATTCTGGTTTTGAT-C 1737
||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||| |
Sbjct 1668 TTTCTAGGCCGCAGCTGGGTAGAAACTGTTTGATACTAAGATTCATTCTGGTTTAGATTC 1727
Query 1738 A-TCAAAACCGACTTAGATTTTGaaaaaaaaGAT-G-A-ATCGGTCACATGCGCC-T--C 1790
||||| | || | ||| || ||| | | | | | | | || || | || | |
Sbjct 1728 TCTCAAA-CAGAATAAGA----GATAAAGA-GCTTGGACAAC--TC-CAA-CTCCGTTAC 1777
Query 1791 GAG--GTCAAGTGTCACCAAGC-A-GCTAAACTGATTCCAATAAGGCCAGTTTGGTTTCT 1846
|| |||| ||||||||| | | || ||||||| |||| | |||||||||||||||||
Sbjct 1778 -AGTTGTCACTTGTCACCAAACCAAGC-AAACTGACTCCAGTCAGGCCAGTTTGGTTTCT 1835
Query 1847 GTTTGGATTGTTAC 1860
|||| |||||||||
Sbjct 1836 GTTTAGATTGTTAC 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5