BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59600.1 Length=2026 Score E Sequences producing significant alignments: (Bits) Value Ahg496095 jgi|Araly1|496095|fgenesh2_kg.8__1911__AT5G59600.1 2643 0.0 > Ahg496095 jgi|Araly1|496095|fgenesh2_kg.8__1911__AT5G59600.1 Length=1872 Score = 2643 bits (1431), Expect = 0.0 Identities = 1733/1874 (92%), Gaps = 40/1874 (2%) Strand=Plus/Plus Query 2 TTCGTTCTCTGTCAGATAAAATTGGGAGCTTTTATTACTTCCGTCACTGAAATCTACCAT 61 ||||||||||||| ||||||| ||||||| |||| ||| | | | |||||| ||| Sbjct 1 TTCGTTCTCTGTCCGATAAAAATGGGAGC-TTTAATAC-T---T--C---AATCTATCAT 50 Query 62 CAGTAATGCGGGTTTTGATAAAG-TTTGAAGCTTTGATTCTTATCCATGAAGAAACTTAC 120 ||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| ||| || | Sbjct 51 CAGTAATGCGGTTTTTGAT-AAGTTTTGAAGCTTTGATTCTTACCCATGAATAAATTTGC 109 Query 121 CATCGTTCCTAGTTCTTTTCGGTTATTATCAATCGGTTCTTATGTTGAACTCATCGAAGC 180 || | ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 110 CACCATTCCTTGTTCTGTTCGGTTATTGTCAATCGGTTCTTATGTTGAACTCATCGAAGC 169 Query 181 CAACGGTCGAGATCGACTGTTTTGTAGAGGAAGAGTGCTTCATGCTCATTTAGTGACATC 240 |||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| Sbjct 170 CAACAGTCGAGATCGACTGCTTTGTGGAGGAATAGTGCTTCATGCTCATTTAGTGACATC 229 Query 241 TGGTATTGCTCGCTTGACGAGAATTGCAGCTAAGCTTGTAACTTTTTATGTTGAATGTGG 300 ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 230 TGGGATTGCTCGCTTGACGAGAATTGCTGCTAAGCTTGTATCTTTTTATGTTGAATGTGG 289 Query 301 GAAAGTTCTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 360 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 GAAAGTTTTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 349 Query 361 TGTTGTCATGATTGGGGCTTGTGCTCGAAATGGGTATTACCAGGAGTCTTTGGATTTCTT 420 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 350 GGTTGTCATGATTGGGGCTTGTGCTCGATATGGGTGTTACCAGGAGTCTTTGGATATCTT 409 Query 421 CA-GAGAAATGTACAAAGACGGTTTAAAACTTGATGCTTTCATTGTTCCTAGTCTTCTTA 479 || | |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 410 CATG-GAAATGAATAAAGAAGGTTTAAAACTTGATGTTTTCATTGTTCCTAGTCTTCTTA 468 Query 480 AAGCCAGTCGCAATCTGCTTGATAGAGAATTCGGGAAGATGATACATTGTCTTGTGCTGA 539 |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 469 AAGCCAATCGCAATCTGCTTGATCGAGAATTTGGGAAGATGATACATTGTCTTGTGCTGA 528 Query 540 AGTTTTCGTATGAGTCTGATGCTTTTATAGTTAGCTCGCTTATTGATATGTACTCGAAGT 599 ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 529 AGTGTTCGTTTGAGTCTGATGCTTTTATAGGTAGCTCGCTTATTGATATGTACTCGAAGT 588 Query 600 TTGGGGAGGTGGGGAATGCGAGGAAGGTGTTCAG-TGATTTGGGTGAACAGGATTTGGTC 658 | |||||||| | ||||||||||||||||||| | ||||||||||||||| ||||||||| Sbjct 589 TCGGGGAGGTAGTGAATGCGAGGAAGGTGTTC-GATGATTTGGGTGAACAAGATTTGGTC 647 Query 659 GTGTTCAATGCTATGATCTCTGGTTATGCTAATAATAGCCAAGCAGATGAAGCATTGAAC 718 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 648 GTGTTCAATGCTATGATCTCTGGTTATGCTAACAATAGCCAAGCAGATGAAGCATTGAAC 707 Query 719 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATGTTATCACTTGGAATGCTCTA 778 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 708 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATATTATCACTTGGAATGCTCTA 767 Query 779 ATTTCAGGGTTCTCGCATATGAGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATG 838 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 768 ATTTCAGGGTTCTCGCATATGGGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATA 827 Query 839 TGTTTGGATGGTTACAAGCCCGACGTTGTGTCCTGGACTTCTATTATATCAGGCCTTGTA 898 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 828 TGTTTGGATGGTTACATGCCCGACGTTGTGTCTTGGACTTCTATTATATCAGGCCTTGTA 887 Query 899 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 947 Query 959 TATCCAAACTCTGCTACGATCATAACTCTATTGCCTGCTTGTACCACACTTGCATATATG 1018 ||||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||| Sbjct 948 TATCCAAACTCAGCTACGATCACAACTCTTTTGCCTGCTTGTACGACACTTGCAAATATG 1007 Query 1019 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGGTTT 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1008 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGTTTT 1067 Query 1079 GTTAGAAGTGCTTTGCTTGACATGTACGGCAAATGTGGCTTCATATCAGAAGCAATGATC 1138 |||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||| Sbjct 1068 GTTAGAAGTGCTTTGCTTGATATGTATGGGAAATGTGGATTCATATCAGAAGCAATGATC 1127 Query 1139 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTTACTTTCAACTCGATGATCTTCTGTTAT 1198 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1128 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTAACTTTCAACTCGATGATCTTCTGTTAT 1187 Query 1199 GCGAATCACGGGCTCGCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1258 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 GCAAATCACGGGCTCTCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1247 Query 1259 GAGAAACTCGACCACTTAACATTCACGGCCATCCTCACAGCCTGCAGCCACGCAGGGTTA 1318 ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 1248 GAGAAACTCGATCACTTAACTTTCACGGCCATCCTCACAGCCTGCAGCCATGCCGGGTTA 1307 Query 1319 ACTGATCTTGGACAAAATTTGTTCCTTTTGATGCAAAACAAGTACAGGATCGTGCCGAGA 1378 ||||||||||||||||| ||||||| ||||||||||| ||||||||| |||| |||||| Sbjct 1308 ACTGATCTTGGACAAAAGTTGTTCCATTTGATGCAAACCAAGTACAGAATCGAGCCGAGG 1367 Query 1379 TTGGAGCATTATGCTTGTATGGTGGATCTTCTCGGCCGAGCAGGGAAGCTTGTTGAGGCC 1438 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1368 TTGGAGCATCATGCTTGTATGGTGGATCTTCTCGGACGAGCAGGGAAGCTTGTTGAGGCC 1427 Query 1439 TATGAGATGATCAAGGCTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1498 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1428 TATGAAATGATCAAGACTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1487 Query 1499 GCTGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTGCAGCAAAGCACTTAGCA 1558 | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1488 GGAGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTTCAGCAAAGCACTTAGCA 1547 Query 1559 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACCAGTTTATATGCCAATGCT 1618 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1548 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACAAGTTTATATGCCGATGCT 1607 Query 1619 GGTAGTTGGGAAAGTGTTGTAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1678 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1608 GGTAGTTGGGAAAATGTTATAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1667 Query 1679 TTTCTAGGCAGCAGCTGGGTAGAAACTGTTTGATCCTAAGACTCATTCTGGTTTTGAT-C 1737 ||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||| | Sbjct 1668 TTTCTAGGCCGCAGCTGGGTAGAAACTGTTTGATACTAAGATTCATTCTGGTTTAGATTC 1727 Query 1738 A-TCAAAACCGACTTAGATTTTGaaaaaaaaGAT-G-A-ATCGGTCACATGCGCC-T--C 1790 ||||| | || | ||| || ||| | | | | | | | || || | || | | Sbjct 1728 TCTCAAA-CAGAATAAGA----GATAAAGA-GCTTGGACAAC--TC-CAA-CTCCGTTAC 1777 Query 1791 GAG--GTCAAGTGTCACCAAGC-A-GCTAAACTGATTCCAATAAGGCCAGTTTGGTTTCT 1846 || |||| ||||||||| | | || ||||||| |||| | ||||||||||||||||| Sbjct 1778 -AGTTGTCACTTGTCACCAAACCAAGC-AAACTGACTCCAGTCAGGCCAGTTTGGTTTCT 1835 Query 1847 GTTTGGATTGTTAC 1860 |||| ||||||||| Sbjct 1836 GTTTAGATTGTTAC 1849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76180490000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5