BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59610.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496096 jgi|Araly1|496096|fgenesh2_kg.8__1912__AT5G59610.1 1332 0.0
> Ahg496096 jgi|Araly1|496096|fgenesh2_kg.8__1912__AT5G59610.1
Length=850
Score = 1332 bits (721), Expect = 0.0
Identities = 810/851 (95%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 1 ATGTATGCAACATCTTCGATTCTGTCTCCAACACCACAAAGTTTCTTCCTTTCGCATCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTATGCAACATCTTCGATTCTGTCTCCAACACCACAAAGTTTCTTCCTTTCTCATCAT 60
Query 61 CTTCCTCCAATTTCGTTCCTTTATCGGATAAATTTTCTGGGTTTTCCTGTAAC---AAGT 117
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 61 CTTCCTCCAATTTCATTCCTTTATCGGATTAATTTTCTGGGATTTCCTGTAACAAGAAGT 120
Query 118 TGCTGCTATGGTGGAGACATTGGTCTCGCTTCGTTATATAAACGACGGAGTAGTATACAA 177
||||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 121 TGCTGCTATGGCGGAGACATTGGTTTCGCTTCGTTCTATAAACGACGGAGTGGTATACAA 180
Query 178 AGACGGAGAAATCGAATCT-TCGTAACCAGAGCTAGATCCTCTCCTTACGAGATTCTTGG 236
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AGACGGAGAAATCGAAT-TGTCGTAACCAGAGCTAGAGCCTCTCCTTACGAGATTCTTGG 239
Query 237 TGTGTCTCCATCAGCGACTCCTCAAGATATAAAAAGAGCTTATCGTAAACTTGCTCTGAA 296
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TGTGTCTCCATCAGCTACTCCTCAAGATATAAAGAGAGCTTATCGTAAACTTGCTCTGAA 299
Query 297 ATATCACCCAGATGTCAATAAAGAGGCAAATGCGCAAGAGAAGTTTTTGAAAATAAAGCA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATATCACCCAGATGTCAATAAAGAGGCAAATGCGCAAGAGAAGTTTTTGAAAATAAAGCA 359
Query 357 TGCATACACTACTCTGATAAACTCTGACTCACGGCGTAAGTACGGTTCAGATAGTCGTGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TGCATACACTACTCTGATAAACTCTGACTCACGGCGTAAGTACGGTTCAGATAGTCGCGC 419
Query 417 GACTGGTTCTTCGACGGGTCAAACAAGTCGAAAAGGCAACAGTCAAGTCGAGGAAGATTT 476
| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GTCTGGTTATTCGACGGGTCAAACAAGTCGAAAAGGCAATAGTCAAGTCGAGGAAGATTT 479
Query 477 CTATGGACTTGGGGATTTCTTCAAAGATCTTCAAGAAGAGTATAAAAACTGGGAAGCTAG 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CTATGGACTTGGGGATTTCTTCAAAGACCTTCAAGAAGAGTATAAAAACTGGGAAGCTAG 539
Query 537 TGCGTCCTCACAAGGAAAACCGAAAAGTCTTTGGGAAGAACTATCGGAAATTGGAGAAGA 596
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 540 TGCGTCCTCACAAGGAAAACCGAAAAGTCTTTGGGAAGAACTAGCGGAAATTGGGGAAGA 599
Query 597 ATTTGTGGAGTTTCTTGAGAAAGAACTTAACATTAGCGACGAAGACAATGAAGGATCAAG 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTTGTAGAGTTTCTTGAGAAAGAACTTAACATTAGCGACGAAGACAATGAAGGATCAAG 659
Query 657 CAAAAACGGAGAAAGATTTGATTTTGAAGAAGGCTC---AACAGAGAAATCTTC--C-GG 710
||||||||||||||||| ||||||||||||| |||| |||||||||||| || | ||
Sbjct 660 CAAAAACGGAGAAAGATATGATTTTGAAGAAAGCTCCTCAACAGAGAAATCGTCGTCAGG 719
Query 711 GAAGAATAATAGTA---GCACAAAGAATAGTATAGAAGACAATATTGATGAGATCGAAGC 767
||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GAAGAATAATAATAATAGCACGAAGAACAGTATAGAAGACAATATTGATGAGATCGAAGC 779
Query 768 AACTCTTGCTCAATTGAAGAAAGATCTTGGCTTGCAATAATCCCATAAGTTATATTAAAA 827
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 AACTCTTGCTCAATTGAAGAAAGATCTTGGCTTGCAATAATCCCATGAGTTATATTAAAA 839
Query 828 TGTTTTTCTTA 838
| |||||||||
Sbjct 840 TCTTTTTCTTA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5