BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59613.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1 632 1e-180
Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1 231 5e-60
> Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1
Length=728
Score = 632 bits (342), Expect = 1e-180
Identities = 406/436 (93%), Gaps = 8/436 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
Query 61 TTTCTCACCGGATTCGCCGTTACCGGCGTTCTCATCACCAAGCTCACCGCTGGACTCACT 120
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 61 TTTCTCACTGGATTCGCCGTCACCGGCGTCCTCATCACCAAGCTCACGGCTGGACTCACC 120
Query 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAGGCGGTAATGTCTTTCTCTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAGTCGGTAATGTCTTTCTCTT 180
Query 181 TCGATCATATCAATGTTAAATTTCGATTTGGAAGCTGAATTCAAATCTGT-ATGTGATTT 239
|||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 181 TCGATCATATCAATGTTAGATTACGATTTGGAAGCTGAATTAAAATCTGTTATGTGATTT 240
Query 240 CTCTGCATCTGTTAATTGAATCTTATTAAGTCACCTACTTCATTCAGATGGCTTAGAATT 299
||| |||||| | ||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 241 CTCCGCATCTATCAATTGAATCTTATCAAGTCACCTACTTCATTCAGATGCCTTAGCATT 300
Query 300 TTATTGTAATTC--ATGATTTTGATATCTGGTTTTCTCCAATAGCCTGTACAAAATCTCA 357
|||||||||||| | ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 301 TTATTGTAATTCTCA-GATTTC-ATTTCTGGTTTTCTCCAATAGCCTATACAAAATCTCA 358
Query 358 ATGTGTAATGTTTGATTTGTCTTGCATCTGTTTCTTGAGCCAGTTTGGTTCTGTATATAT 417
|||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||
Sbjct 359 ATGTGTAATGTTTGATTTGTCT-GCATGTGTTGCTTGAGCCATTTTGGTTCTGTATATAT 417
Query 418 TTTGTAATGCTTGATG 433
|||||||||||||
Sbjct 418 G--GTAATGCTTGATG 431
Score = 276 bits (149), Expect = 2e-73
Identities = 199/223 (89%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 577 TCATGTTCTGTTGTGAAATCTCAGGTGATCTACTGACGTGAGTTGTCGAAGCTGAGAAGC 636
||||| |||||| ||||||||||||||||||||||| ||||||||| ||||| ||| ||
Sbjct 488 TCATGATCTGTTTTGAAATCTCAGGTGATCTACTGATGTGAGTTGTAGAAGC-GAGTAGG 546
Query 637 CGAAGCGTTCTTATGGAAACTACTGAGAGTGCTTCAGCTTTCAAACCTGTTCTAATAACA 696
| ||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||
Sbjct 547 CTAAGCGTTCTTATGGAAACTACCGTGAGTGCTTCAGC-TT-AAACCTGTTCTAATAACA 604
Query 697 TGAAAGAGAGGATTATAGACACTATCAATCTCTCGTTT-CCTTTTCTCTGTGTTTTCACA 755
|||||||||| ||| |||||||||| |||||||| ||| || |||||||||||||||||
Sbjct 605 TGAAAGAGAGAATTCTAGACACTATGAATCTCTCTTTTTCCGATTCTCTGTGTTTTCACA 664
Query 756 ACTCTTGAACAGTGCAAATTCTACTCTGTTTATCCAAtttttt 798
|||||||||| ||||||||||||| |||| |||| |||||||
Sbjct 665 GCTCTTGAACAATGCAAATTCTACTTTGTTGATCCGATTTTTT 707
> Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1
Length=377
Score = 231 bits (125), Expect = 5e-60
Identities = 150/162 (93%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCA 93
Query 61 TTTCTCACCGGATTCGCCGTT-ACCGGCGTTCTCATCACCAAGCTCACCGCTGGACTCAC 119
|| ||||| ||||||||| || ||||||||||||||||||||| | ||||| ||||||||
Sbjct 94 TTCCTCACTGGATTCGCC-TTCACCGGCGTTCTCATCACCAAGTTAACCGCCGGACTCAC 152
Query 120 TGAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAG 161
||||||||| || |||||||||||||| || |||||||||||
Sbjct 153 TGAGGAAGATGCGAAGAACTCCAAGTTCGTTCAACAACACAG 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5