BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59650.1

Length=2679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358185 jgi|Araly1|358185|fgenesh1_pg.C_scaffold_8001972           311    2e-83


> Ahg358185 jgi|Araly1|358185|fgenesh1_pg.C_scaffold_8001972
Length=744

 Score =  311 bits (168),  Expect = 2e-83
 Identities = 196/209 (94%), Gaps = 3/209 (1%)
 Strand=Plus/Plus

Query  33   ATTAGGAGCTTTTGCCATTATTGGTTGTGTTCAAGCTCAGGATCAACAAGAGTTTATCAG  92
            ||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  289  ATT-GGAGCTTTTGCCGTTATTGGTTGTGTTCGAGCGCAGGATCAACAAGAGTTTATCAG  347

Query  93   TTTGGATTGCGGGTTACCCATGACTGAACCGTCTTCTTATACTGAGTCAGTAACCGGACT  152
            ||||||||| ||||||||| ||| ||||||||||||||||  ||||||||||||||||||
Sbjct  348  TTTGGATTGTGGGTTACCCGTGAGTGAACCGTCTTCTTATGTTGAGTCAGTAACCGGACT  407

Query  153  ACGGTTCTCGTCTGATGCTGAATTCATCCAGACTGGTGAAAGTGGTAAAATCCAGGCGAG  212
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct  408  ACGGTTCTCGTCTGATGCTGAATTCATCCAGACTGGTAAAAGTGGTAAAATCCAGGCGAA  467

Query  213  TATGGAGAATGACTACCTT-AAGCCGTAC  240
            |||||||||||||||| || |||||||||
Sbjct  468  TATGGAGAATGACTAC-TTGAAGCCGTAC  495


 Score =  211 bits (114),  Expect = 2e-53
 Identities = 140/152 (92%), Gaps = 3/152 (2%)
 Strand=Plus/Plus

Query  621  GTACCCGGATGATATTTATGATCGCAGATGGCATAATTACTTTATGGTGGATGATTGGAC  680
            ||||||||||||| |||||||||||||||||| ||||| |||| ||||||  | ||||||
Sbjct  492  GTACCCGGATGATGTTTATGATCGCAGATGGCGTAATTTCTTTTTGGTGG--G-TTGGAC  548

Query  681  CCAAATTTTCACCACTCTCGAAGTGACCAATGATAACAATTATGAACCACCAAAAAAGGC  740
            |||||||| ||||||||| ||||||| |||||||||| ||||| ||||||||||||||||
Sbjct  549  CCAAATTTCCACCACTCTTGAAGTGAGCAATGATAACGATTATCAACCACCAAAAAAGGC  608

Query  741  TCTTGCAGCGGCTGCCACGCCTTCTAATGCCA  772
            ||||||||||||||||||||||||||||||||
Sbjct  609  TCTTGCAGCGGCTGCCACGCCTTCTAATGCCA  640



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 101053419985


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5