BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59660.1
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459 366 4e-100
Ahg950712 jgi|Araly1|950712|scaffold_802599.1 298 1e-79
Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 87.9 3e-16
> Ahg917708 jgi|Araly1|917708|Al_scaffold_0008_2459
Length=1185
Score = 366 bits (198), Expect = 4e-100
Identities = 581/755 (77%), Gaps = 69/755 (9%)
Strand=Plus/Plus
Query 958 AGTAG-AATCAACTGGCAAGGCGATCCATGTGTCCCTCAACATTTTATCTGGGATGGTTT 1016
||||| ||| | ||||||||| |||||||||||||||| || |||| ||||| || ||
Sbjct 46 AGTAGAAAT-AGCTGGCAAGGAGATCCATGTGTCCCTCGGCAGTTTAGGTGGGACGGATT 104
Query 1017 AAATTGCAGCAATACGGATATC-TCCACACCACCAAGAATTACTTCTTTAAACTTGTCTT 1075
||| |||||||| || |||| | | | | |||||||||| |||||||||||||||||||
Sbjct 105 AAACTGCAGCAACACTGATA-CGT-C-TA-CACCAAGAATCACTTCTTTAAACTTGTCTT 160
Query 1076 CAAGTGGTTTAACTGGAAACATAGCTGCTGCCATTCAAAACCTTACGCAACTAGAAAAAC 1135
||||||||||| |||||| |||||| |||||||||||||| || |||||||||||||| |
Sbjct 161 CAAGTGGTTTAGCTGGAACCATAGCAGCTGCCATTCAAAATCTCACGCAACTAGAAAAGC 220
Query 1136 TGGACTTGTCGAATAACAACTTGACTGGAGGGGTGCCGGAGTTTCTAGGCAACATGAAAT 1195
|||||||||| ||||| || |||||||||| |||||| || |||||||||||||| ||||
Sbjct 221 TGGACTTGTCCAATAATAATTTGACTGGAGAGGTGCCAGAATTTCTAGGCAACATAAAAT 280
Query 1196 CGTTGTCCTTCAT----T---G--GGAACAATCTTAGTGGTTCAATACCTCAAACTCTTC 1246
| |||| ||||| | | |||||||||||| ||||||||| |||||| ||||||
Sbjct 281 CATTGTTGTTCATAAACTTAAGCTGGAACAATCTTAATGGTTCAATTCCTCAATCTCTTC 340
Query 1247 AAAAGAAGAG-ACTAGAACTATTTGTTGAAGGAAACCCAAGGCTCTGTCTCTCTGATTCA 1305
||||||| || ||| ||| ||||| | |||| ||||| ||||| |||||||||| ||||
Sbjct 341 AAAAGAA-AGGACTGGAATTATTTCCTCAAGGGAACCCTAGGCTTTGTCTCTCTGGTTCA 399
Query 1306 TGTAGGAAACCA-CCTAAGAAG-AAA--ATT-C-ATGTGGCAATTGTTGCATCAGTTGCT 1359
|| | ||| || || | | ||| ||| | | ||||||||||| ||||||||||||
Sbjct 400 TGCCT-A--CCATCC-AA-ACGCAAATTATTTCCA-GTGGCAATTGTCGCATCAGTTGCT 453
Query 1360 TCTGCTG-CCA-T-TG-TCGTTGCTGTATTGATTCTT-TTTCTTATACTCAGAAAGAGAA 1414
|| | || ||| | | || ||||||| ||| ||||| ||| || | ||||||||| ||
Sbjct 454 TCGG-TGGCCAGTATTATCATTGCTGTCTTGGTTCTTATTT-TTGTTTTCAGAAAGAAAA 511
Query 1415 AGTCAACTATTGTACAAGGTCAACACCTGCCACCGAGCACATCAAC-T-G-TAGA-TGTT 1470
|| | | | ||| || || ||| | |||||| || | ||| | | | | || ||||
Sbjct 512 AGCCGTCAACTGTGGGAGCTCTACAACAGCCACCTAGTATATCGCCATCGGT-GAATGTT 570
Query 1471 ACATTTGCTAATA-A---GAAA-AGCAA---AA--G-----G------TTCACATATTTA 1509
|||| | ||||| | |||| | ||| || | | || || |||| |
Sbjct 571 ACATATCCTAATTCACCTGAAACATCAATCCAAACGAATAAGAGGAGGTTTACTTATTCA 630
Query 1510 GAGGTCA-TCAAAATGACAAACAACTTCCAAAGAGTC-TTAGGTAAAGGAGGGTTCGGCA 1567
||||||| | | | ||||||| |||||||||||||| || || || ||||| ||||| |
Sbjct 631 GAGGTCACTGATA-TGACAAAAAACTTCCAAAGAGTTGTTGGGGAA-GGAGGATTCGGTA 688
Query 1568 TGGTGTATCATGGTACTGTAAAGGGTTCTG-ATCAGGTGGCCGTTAAAGTACTCTCTCAA 1626
| || ||||| |||||| | || || || | || || || ||||||||||||||||||
Sbjct 689 TTGTCTATCACGGTACTCTGAATGGAAATGCA-CAAGTAGCTGTTAAAGTACTCTCTCAA 747
Query 1627 TCGTCAACTCAAGGGTATAAACAATTCAAAGCAGA 1661
|| ||||||||||| || || |||||||| |||||
Sbjct 748 TCATCAACTCAAGGCTACAAGCAATTCAAGGCAGA 782
> Ahg950712 jgi|Araly1|950712|scaffold_802599.1
Length=465
Score = 298 bits (161), Expect = 1e-79
Identities = 185/197 (94%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 499 TACATGAAAGATGTATATGATCGCACATGGGTATCATATGGAGCCAGTTTTCGGACGGGA 558
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 187 TACATGAAAGATGTCTATGATCGCACATGGGTATCGTATGGAGCCAGTTTTCAGACGGGC 246
Query 559 TGGACCCAGATTTATACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCGAAA 618
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 TGGACACAAATTTACACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCAAAA 306
Query 619 GATGCGCTAAGAAATGCTGCCACACCGACTAATGCCAGTGCACCATTGACGATTGAATGG 678
|||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 307 GATGCGCTAAAAAATGCTGCCATACCGACTAATGCCAGTGCGCCATTGAAGATTGAATGG 366
Query 679 CCTTCAGGAAGTCCCAG 695
|||||||||||||||||
Sbjct 367 CCTTCAGGAAGTCCCAG 383
Score = 231 bits (125), Expect = 1e-59
Identities = 140/147 (95%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 118 GGATTCATCAGTTTGGATTGCGGACT-CCCTGCGAATGAACTGTCTCCTTATGAAGAGAG 176
||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct 37 GGATTCATCAGTTTGGATTGCGGGCTACCC-GCGAATGAACAGTCTCCTTATGAAGAGAG 95
Query 177 TTTCACTGGACTGCGGTTCTCTTCGGATGAAAAGTTCATACGTAGTGGAAAAAACGGTCG 236
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 96 TTTCACTGGACTGCGGTTCTCTTCAGATGAAAAGTTCGTACGTAGTGGAAAAAACGGTCG 155
Query 237 AATCCGAGAAAATCCTCAGGGATACGC 263
|||||||||||||||| ||||||||||
Sbjct 156 AATCCGAGAAAATCCTGAGGGATACGC 182
> Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1
Length=3408
Score = 87.9 bits (47), Expect = 3e-16
Identities = 82/98 (84%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 1810 CCGCCAATGGTTCATAGAGATGTCAAAACTGCCAACATATTGCTAGA-TGAGAATTTC-A 1867
|||||||||||||||||||||||||||||| | || ||| | |||| | | |||| |
Sbjct 2765 CCGCCAATGGTTCATAGAGATGTCAAAACTACGAATATACTATTAGACT-ATCGTTTCGA 2823
Query 1868 AGGCCAAACTCGCTGATTTTGGTCTCTCAAGATC-TTT 1904
|| |||||||||| |||||||| ||||||||||| |||
Sbjct 2824 AG-CCAAACTCGCGGATTTTGGACTCTCAAGATCATTT 2860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96482590585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5