BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59690.1
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 676 0.0
Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 518 2e-146
Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 518 2e-146
Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 394 4e-109
Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2 337 7e-92
Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2 326 1e-88
Ahg485763 jgi|Araly1|485763|fgenesh2_kg.5__1755__AT3G53730.1 289 2e-77
> Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1
Length=428
Score = 676 bits (366), Expect = 0.0
Identities = 411/432 (95%), Gaps = 5/432 (1%)
Strand=Plus/Plus
Query 31 CTTAACCGTTCTTCTTCTTCTACAGACATCAATTTCTCTCGAGATAAA-CTAAATCTTCG 89
||||||||||||||||| ||| || |||||| ||||||||||| ||| |||||||||||
Sbjct 1 CTTAACCGTTCTTCTTCCTCT--AG-CATCAAATTCTCTCGAGA-AAATCTAAATCTTCG 56
Query 90 CTGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGC 149
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 57 TTGAAAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGC 116
Query 150 GTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGAT 209
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 117 GTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGAT 176
Query 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCG 269
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 177 TGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCG 236
Query 270 TCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTA 329
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 TCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTA 296
Query 330 GGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTC 389
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 GGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTC 356
Query 390 TTTACGGATTCGGTGGTTAATTAGAGTTTTTCAGATCCGCGTTTGTGTTTTCTGGGTTTC 449
||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 357 TTTACGGATTCGGCGGTTAATCGGGGTTTTTCAGATCCGCGTTTGTGTTTTCTGGGTTTC 416
Query 450 TCACTTAAGCGT 461
| ||||| ||||
Sbjct 417 TTACTTAGGCGT 428
> Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1
Length=491
Score = 518 bits (280), Expect = 2e-146
Identities = 315/332 (95%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 76 AAACTAAATCTTCGCTGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAA 135
||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 7 AAACTAAAT-TTCTC-GAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAA 64
Query 136 GGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 195
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 124
Query 196 TGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGA 255
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 125 GGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGA 184
Query 256 GGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTA 315
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 185 GGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTA 244
Query 316 CACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAG 375
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 245 CACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAG 304
Query 376 GCAAGGAAGGACTCTTTACGGATTCGGTGGTT 407
||||||||||||||||||||||||||| ||||
Sbjct 305 GCAAGGAAGGACTCTTTACGGATTCGGCGGTT 336
> Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1
Length=491
Score = 518 bits (280), Expect = 2e-146
Identities = 315/332 (95%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 76 AAACTAAATCTTCGCTGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAA 135
||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 7 AAACTAAAT-TTCTC-GAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAA 64
Query 136 GGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 195
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 124
Query 196 TGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGA 255
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 125 GGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGA 184
Query 256 GGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTA 315
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 185 GGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTA 244
Query 316 CACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAG 375
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 245 CACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAG 304
Query 376 GCAAGGAAGGACTCTTTACGGATTCGGTGGTT 407
||||||||||||||||||||||||||| ||||
Sbjct 305 GCAAGGAAGGACTCTTTACGGATTCGGCGGTT 336
> Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1
Length=501
Score = 394 bits (213), Expect = 4e-109
Identities = 301/343 (88%), Gaps = 8/343 (2%)
Strand=Plus/Plus
Query 63 TTTCTCTCGAGATAAACT-AAA-TCTTCGCTGAAAAAATGTCGGGTCGTGGAAAGGGAGG 120
||| || ||||| ||| | ||| | ||| |||| |||||||| |||||||||||||||||
Sbjct 18 TTT-TCCCGAGA-AAAATCAAAGT-TTC-CTGAGAAAATGTCAGGTCGTGGAAAGGGAGG 73
Query 121 AAAAGGTTTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCA 180
||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 74 CAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTGAGAGATAACATCCA 133
Query 181 AGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAG 240
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 134 AGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAG 193
Query 241 TGGTCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCG 300
|||||| |||||||||||||| |||||||| |||||||||||| | ||||| || || ||
Sbjct 194 TGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGGAGAATGTTATCCG 253
Query 301 TGATGCTGTCACTTACACCGAGCACGCTA-GGAGGAAGACTGTGACCGCCATGGATGTTG 359
||| || || |||||||| |||||||| | |||||||||| ||||| || ||||||||||
Sbjct 254 TGACGCCGTTACTTACACTGAGCACGC-ACGGAGGAAGACGGTGACTGCTATGGATGTTG 312
Query 360 TCTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGG 402
| || ||||| ||||| |||||||| ||||| || ||||||||
Sbjct 313 TTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGG 355
> Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2
Length=441
Score = 337 bits (182), Expect = 7e-92
Identities = 276/322 (86%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 91 TGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCG 150
|||| | ||||| || | ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 40 TGAAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAG 99
Query 151 TCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGAT- 209
||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| | |
Sbjct 100 GCACAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCG-TC 158
Query 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTC-GTGGC 268
| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 159 TTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGT 217
Query 269 GTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCT 328
|||||||||||||| |||||||| || || ||||| || || || ||||| ||||||||
Sbjct 218 GTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCC 277
Query 329 AGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACT 388
||||||||||| ||||| ||||||||||||||||||||| | |||||||||||| | |||
Sbjct 278 AGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACT 337
Query 389 CTTTACGGATTCGGTGGTTAAT 410
|| ||||| ||||| |||||||
Sbjct 338 CTCTACGGTTTCGGCGGTTAAT 359
> Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2
Length=483
Score = 326 bits (176), Expect = 1e-88
Identities = 274/322 (85%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 91 TGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCG 150
|||| | ||||| || | ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 31 TGAAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAG 90
Query 151 TCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGAT- 209
|| |||||||||||||| || ||||| ||||| |||||||||||||| ||||| | |
Sbjct 91 GCATAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCG-TC 149
Query 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTC-GTGGC 268
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| | | ||
Sbjct 150 TTGCTCGCAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGT 208
Query 269 GTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCT 328
|||||||||||||| |||||||| || || ||||| || || || ||||| ||||||||
Sbjct 209 GTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCC 268
Query 329 AGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACT 388
||||||||||| ||||| ||||||||||||||||||||| | |||||||||||| | |||
Sbjct 269 AGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACT 328
Query 389 CTTTACGGATTCGGTGGTTAAT 410
|| ||||| ||||| |||||||
Sbjct 329 CTCTACGGTTTCGGCGGTTAAT 350
> Ahg485763 jgi|Araly1|485763|fgenesh2_kg.5__1755__AT3G53730.1
Length=401
Score = 289 bits (156), Expect = 2e-77
Identities = 264/317 (83%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 95 AAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCGTCA- 153
|||||||| || || ||||| ||||||||||| ||||| ||||||||||||||| | ||
Sbjct 1 AAAATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACAT 60
Query 154 CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGC 213
| |||| ||||| |||||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 61 C-GGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGATTGGC 119
Query 214 TCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCGTCCT 273
| | ||||| || || || |||||||||||| | ||||| || |||||||| ||||| ||
Sbjct 120 TAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGGGGCGTTCT 179
Query 274 CAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAG 333
|||||||||||||||||||||||||||||| || || |||||||| ||||||||| | |
Sbjct 180 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 239
Query 334 GAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCTT-T 392
||| || || || || ||||| || || |||||||| ||||| |||||| ||||| || |
Sbjct 240 GAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGACGGACT-TTGT 298
Query 393 ACGGATTCGGTGGTTAA 409
| |||||||| || |||
Sbjct 299 ATGGATTCGGCGGCTAA 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21672374552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5