BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59710.1
Length=2777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496103 jgi|Araly1|496103|fgenesh2_kg.8__1919__AT5G59710.1 4096 0.0
> Ahg496103 jgi|Araly1|496103|fgenesh2_kg.8__1919__AT5G59710.1
Length=2730
Score = 4096 bits (2218), Expect = 0.0
Identities = 2600/2775 (94%), Gaps = 64/2775 (2%)
Strand=Plus/Plus
Query 14 TTTTCCGATTTAGGGCACCAAATTGAAT-CAAAATCTCCGCTTCTTCCCAATTTACGAAA 72
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 1 TTTTCCGATTTAGGGCACCAAATTG-ATACAAAATCTCCGC-TCTTCCCAATTTACGAAA 58
Query 73 CTTCACGAAAAATCTTCTTCGGATTCTTCTTAACCctttctctcaatttttcttccagag 132
| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 59 CCTCACG-AAAATCTTCTTCGGA---TTCTTAACCCTTTCTCTCAATTCTTCTTCCAGGG 114
Query 133 ttttctaattgggcactgtttctcttcttcttcttcttcttcCTCCGTACGCATCCTTCT 192
||||| ||||| |||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 115 TTTTCGAATTGAGCACTG--T-TC-TCTTCTTCTTCTTCTTCCTCCGTACGCATCCTTCT 170
Query 193 CCTTTTTACTGTTGAGTGTGAACAGATT-TAAACAACGTC-ATTTCTAGGGTTTTCGGAG 250
|| |||||||| |||||||||||||||| |||| ||| | |||| ||||||||||||||
Sbjct 171 CC-TTTTACTG-TGAGTGTGAACAGATTCAAAAC-ACG-CGATTTTTAGGGTTTTCGGAG 226
Query 251 TTCAATTTTGTTATCTTACTATTGAATTTGCATCGCGATAGCTGAATTTAG-GATCCTGT 309
|||||||| ||||| ||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 227 TTCAATTTCCTTATCCTACTATTGAGTTTGCATCGCGATAGCTGAATTTTGAGATCCTGT 286
Query 310 GTTG-TTGCTCAGTCGT-ATTATTACAACTGTTGAATTACGCTTGCGTTTGATTGttttt 367
|||| || ||||||||| ||| | ||||| | |||||||||||| | | |||
Sbjct 287 GTTGTTTACTCAGTCGTAATT-TCACAACAGCTGAATTACGCTT-C---CG-TTG----- 335
Query 368 ttCTTTATTGGATCCTCGTGAGGtttttttttCTTGTTCTGAATCGTTTCCTGGACTTCT 427
||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||
Sbjct 336 ------ATTGGATCCTCGTTAGTTTTTTTTTTCTCGTTCTGAATCG-TTCCTAGACTTCT 388
Query 428 GATTTCCTGCTAGAAGTTTATTTCATGGTTGCTGATTCATTATCTTCTTGTTTCTAGATG 487
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 389 GATTTCCTGCTAGAAGTTTGTTTCATGGTTGCTGATTCATTATCTTCTTGTTTCTGGATG 448
Query 488 -AAAG-TTTAC-TGTGTATAAACCTTCAAAGGATGAGAATTTCAATCTTACTTTGAACAA 544
|||| ||| | || | ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 449 AAAAGTTTTGCTTG-GGATAAACCTTGAAAGAATGAGAATTTCAATCTTACTTTGAACAA 507
Query 545 TATGTAGTTTATACAGTAGCTTCGTCTGTTGTTGCACCATGGTTGATAAGATTTATGTCT 604
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 508 TATGTAGTTTATACAGTAAATTCGTCTGGTGTTGCACCATGGTTAATAAGATTTATGTCT 567
Query 605 CCTTTGTTTGGTTTATTGAATTCTTCCTTTTTTCCAGGCTATTCATTTCTGAGTAATCGT 664
||||||||| |||||| |||||||| ||||||| ||||||||||||||||| | ||||
Sbjct 568 CCTTTGTTTAGTTTATAGAATTCTT-CTTTTTT-CAGGCTATTCATTTCTGTG-CGTCGT 624
Query 665 TTATTCCATCTCAGATTGTAGGCGGT--TTCGCGTCTTGTCACCGAATGATACATTGTCT 722
||||||| |||||||||||||| ||| ||||||||||||| |||||||||| ||| ||
Sbjct 625 TTATTCCCTCTCAGATTGTAGGTGGTGGTTCGCGTCTTGTCGCCGAATGATATTTTGCCT 684
Query 723 CACGTGAGATTGTCAGTCAGTTAGTGCAATGTCAAACCTTCATTCATCTCTCAATGGTTC 782
||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 685 CAC-T-TGATTATCAGTCAGTTCGTGCAATGTCAAACCTTCATTCATCTCTCAATGGTTC 742
Query 783 AGCTTCGAATTTACCAGATGGTTCGGGCAGATCGTTTACTGCTTCTTATTCTGGACAATC 842
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 743 AGCTTCAAATTTACCAGATGGGTCTGGCAGATCGTTTACTGCTTCTTATTCTGGACAATC 802
Query 843 TGGTGCACCGTCTCCCTCTTTTCATCATACTGGAAATCTTCAGGGACTTCATAATATTCA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TGGTGCACCGTCTCCCTCTTTTCATCATACTGGAAATCTTCAGGGACTTCATAATATTCA 862
Query 903 TGGGAACTATAATGTCGGGAACATGCAAGGTACACTTACATCAAGAAACTCAAGTATGAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGGGAACTATAATGTCGGGAACATGCAAGGTACACTTACATCAAGAAACTCAAGTATGAA 922
Query 963 TAGTATACCATCTGCCGGAGTTCAACAACCTAATGGGAGTTTTTCCAGTGGAAGATTTGC 1022
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 923 TAGTATACCATCTGCCGGGGTTCAACAACCTAATGGGGGTTTTTCCAGTGGAAGATTTGC 982
Query 1023 TTCAAATAATCTACCTGTTAATCTCTCTCAGTTGTCCCATGGTAGCTCACATGGGCATTC 1082
|||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||
Sbjct 983 TTCAAATAATCTACCTGTTAATCTATCTCAGATGTCTCATGGTAGCTCTCATGGGCATTC 1042
Query 1083 GGGAATCCCAAATAGAGG--T-CTTAATGTTGTTGGCAACCCTGGATTCAGTAGTAACGC 1139
||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||
Sbjct 1043 TGGAATCCCAAATAGAGGAGTTCTTAATGTTGTTGGCAACCCTGGATTCAATAGTACCGC 1102
Query 1140 TAATGGAGTTGGTGGTTCTATTCCTGGAATTCTCTCTACATCTGCAGGACTCAGTAATCG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TAATGGAGTTGGTGGTTCTATTCCTGGAATTCTCTCTACATCTGCAGGACTCAGTAATCG 1162
Query 1200 GAATAGTGTTCCAGGGATGGGAATATCCCAATTGTTGGGAAATTCAGGTCCTCGAATAAC 1259
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1163 GAGTAGTGTTCCAGGGATGGGAATGTCCCAATTGTTGGGAAATTCAGGTCCTCGGATAAC 1222
Query 1260 AAATTCAATGGGAAACATGGTTGGTGGAGGTAACTTGGGGAGGAATATTAGCTCTGGTGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AAATTCAATGGGAAACATGGTTGGTGGAGGTAACTTGGGGAGGAATATTAGCTCTGGTGG 1282
Query 1320 ATTGTCTATTCCTGGTCTGTCTTCACGACTAAATTTGGCAGCAAATAGCGGATCAGGATT 1379
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1283 ATTATCTATTCCTGGTCTGTCTTCTCGACTAAATTTGGCAGCAAATAGCGGATCAGGATT 1342
Query 1380 AAATGTTCAGGGACAGAACCGAATGATGGGTGGAGTACTTCCTCAAGGATCTCAGGTCAT 1439
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1343 AAATGTACAGGGACAGAACCGAATGCTGGGTGGAGTACTTCCTCAAGGATCTCAGGTCAT 1402
Query 1440 GTCTATGCTGGGGAACTCCTATCATACTGGTGGTGGCCCGCTTTCGCAGAATCATGTTCA 1499
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1403 GTCTATGCTGGGGAACTCCTATCATGCTGGTGGTGGCCCACTTTCGCAGAACCATGTTCA 1462
Query 1500 GTCAGTTAACAATATGATGCTCAGTGATCA-TCCTAACGACAGCTCTCTATTTGACATCA 1558
|||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||
Sbjct 1463 GTCAGTTAACAATATGATGCTCAGTGATCACTC-TAACGATAGCTCTCTTTTTGACATCA 1521
Query 1559 ACAACGATTTTCCCCAGCTGACAAGTCGTCCTGGGTCTGCTGGTGGCACTCAAGGACATC 1618
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1522 ACAACGATTTTCCCCAGCTGACAAGTCGTCCTGGATCTGCTGGTGGCACTCAAGGACAAC 1581
Query 1619 TAGGCTCTTTGAGGAAACAAGGTTTAGGAGTTCCACTTGTCCAACAAAACCAGGAGTTCA 1678
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1582 TAGGCTCTTTGAGGAAACAAGGTTTAGGTGTCCCACTTGTCCAACAAAACCAGGAGTTCA 1641
Query 1679 GCATCCAAAATGAAGACTTTCCTGCCCTTCCTGGATATAAAGGTGGTAATTCTGAGTATC 1738
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1642 GCATCCAAAATGAAGACTTTCCTGCTCTACCTGGATATAAAGGTGGTAATTCTGATTATC 1701
Query 1739 CTATGGATTTGCATCAAAAAGAACAACTGCATGACAATGCTATGTCAATGATGCACTCTC 1798
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1702 CTATGGATTTGCATCAGAAAGAACAACTCCATGACAATGCTATGTCAATGATGCACTCTC 1761
Query 1799 AAAACTTTTCTATGGGTAGATCTGGTGGTTTCAACTTGGGAGCAACATATTCATCACATC 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 AAAACTTTTCTATGGGTAGATCTGGTGGTTTCAACTTGGGAGCAACATATTCATCACATC 1821
Query 1859 GTCCACAACAACAGCCACAACATACTTCATCTACTGGTGGGCTACAGGGTCTTGGCCTTA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 GTCCACAACAACAGCCACAACATACTTCATCTACTGGTGGGCTACAGGGTCTTGGCCTTA 1881
Query 1919 GACCTCTAAGCTCGCCTAATGCAGTTTCCAGTATTGGTTATGATCAGCTTATTCAGCAGT 1978
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1882 GACCTCTAAGCTCCCCCAATGCAGTTTCCAGTATTGGTTATGATCAGCTTATACAGCAGT 1941
Query 1979 ATCAGCAACATCAAAATCAATCCCAGTTCCCTGTGCAACAGATGTCATCAATCAACCAAT 2038
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1942 ATCAGCAACATCAAAATCAATCCCAGTTTCCTGTGCAACAGATGTCATCAATCAACCAAT 2001
Query 2039 TTAGAGATTCTGAGATGAAATCGACACAGTCAGAGGCAGATCCTTTTTGCTTGCTTGGCT 2098
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2002 TTAGAGATTCTGAGATGAAATCGACACAGTCAGAGGCAGATCCTTTTTGCTTACTTGGCT 2061
Query 2099 TGTTAGACGTACTAAACAGGAGCAACCCTGAATTGACCTCACTTGCTCTTGGCATCGACT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 TGTTAGACGTACTAAACAGGAGCAACCCTGAATTGACCTCACTTGCTCTTGGCATCGACT 2121
Query 2159 TGACGACGCTAGGATTGGATTTGAATTCAACTGGAAATCTCTACAAGACATTTGCGTCTC 2218
||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| || |
Sbjct 2122 TGACGACACTAGGATTGGATTTGAATTCAAATGGAAATCTTTACAAGACATTTGCTTCCC 2181
Query 2219 CTTGGACAAATGAACCGGCAAAGAGCGAGGTCGAGTTCACAGTACCAAATTGTTACTACG 2278
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 CCTGGACCAATGAACCGGCAAAGAGCGAGGTCGAGTTCACAGTACCAAATTGTTACTACT 2241
Query 2279 CCACAGAACCTCCGCCTCTAACTCGAGCTAGTTTCAAAAGGTTCTCCTACGAGTTATTGT 2338
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2242 CCACACCACCTCCGCCTCTAACTCGAGCTAGTTTCAAAAGATTCTCCTACGAGTTATTGT 2301
Query 2339 TCTACACATTTTACAGTATGCCAAAAGATGAAGCACAGCTGTACGCAGCAGATGAACTTT 2398
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 2302 TCTACACATTTTACAGTATGCCGAAAGATGAAGCACAGCTATTCGCAGCAGATGAACTTT 2361
Query 2399 ACGAAAGAGGTTGGTTTTACCACAAGGAACTCAGAGTATGGTTCTTCAGAGTCGGGGAAC 2458
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2362 ACGAAAGAGGTTGGTTTTACCACAAGGAACTCAGATTATGGTTCTTCAGAGTTGGGGAAC 2421
Query 2459 CTTTAGTCAGGGCAGCTACATATGAAAGAGGAACATACGAATACCTTGATCCAAATTCGT 2518
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2422 CTTTAGTCAGGGCAGCTACATATGAAAGAGGAACATATGAATACCTCGATCCAAATTCGT 2481
Query 2519 TCAAAACAGTGAGAAAGGAACATTTTGTTATCAAGTACGAGCTTATGGAAAAGAGACCAA 2578
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2482 TCAAAACAGTCAGAAAGGAACATTTTGTTGTCAAGTACGAGCTCATGGAAAAGAGACCAA 2541
Query 2579 GCTTGCTGCAGCTTTGACGACAAGTAGGTTTGTTCAATTAGTAGCATCTTTACAATGTAA 2638
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2542 GCTTGCTGCAGCATTGACGACATGTAGGTTTGTTCAATTAGTAGCATCTTTACAATGTAA 2601
Query 2639 AGcttttctcttcatttctctttcttt--ct-tt-ctttcATGCAAGTTCTATTGATTAG 2694
||||||||||||||||||| | ||||| || || | |||||||||||| ||||||||||
Sbjct 2602 AGCTTTTCTCTTCATTTCTATCTCTTTGTCTCTTTCGTTCATGCAAGTTTTATTGATTAG 2661
Query 2695 AAACCAAAACCATGACATATCACATTTTCAATTTTTAACCCCAAGTTTCCCAAAAAGGTA 2754
|||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2662 AAACCAAA-CCAT--C-T--CACATTTTCAATTTTTAACCCCAAGTTTCCCAAAAAGGTA 2715
Query 2755 ATCACAATTACTTTC 2769
|||||| ||||||||
Sbjct 2716 ATCACAGTTACTTTC 2730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104786263995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5