BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59720.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496104 jgi|Araly1|496104|fgenesh2_kg.8__1920__AT5G59720.1 928 0.0
> Ahg496104 jgi|Araly1|496104|fgenesh2_kg.8__1920__AT5G59720.1
Length=664
Score = 928 bits (502), Expect = 0.0
Identities = 615/668 (92%), Gaps = 13/668 (2%)
Strand=Plus/Plus
Query 41 GAAAAGCAACGAACAATGTCTCTCATTCCAAGCATTTTTGGAGGACGCAGATCAAACGTC 100
|||||||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1 GAAAAGCAACAAACGATGTCTCTAATTCCAAGCATTTTCGGAGGACGTAGATCAAACGTC 60
Query 101 TTTGATCCGTTCTCGCAAGACTTATGGGATCCATTCGAAGGATTCTTCACGCCATCTTCT 160
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCGATCCGTTCTCGCAAGACGTATGGGATCCATTCGAAGGATTCTTCACCCCATCTTCT 120
Query 161 GCGTTGGCAAACGCTTCAACCGCTCGTGATGTGGCAGCGTTTACAAACGCAAGAGTGGAT 220
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGTTAGCAAACGCTTCAACCGCTCGTGATGTGGCAGCGTTTACAAACGCAAGAGTGGAC 180
Query 221 TGGAAGGAAACGCCGGAGGCACATGTGTTCAAAGCGGACTTGCCAGGCCTGAAGAAGGAA 280
|||||||| || || |||||||| |||||||||||||| || || || ||||||||||||
Sbjct 181 TGGAAGGAGACCCCCGAGGCACACGTGTTCAAAGCGGATTTACCGGGACTGAAGAAGGAA 240
Query 281 GAAGTCAAGGTTGAGGTTGAAGACAAGAACGTTCTGCAGATTAGCGGAGAGAGGAGCAAG 340
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTGAAGGTTGAGGTTGAAGACAAGAACGTTCTGCAGATTAGCGGAGAGAGGAGCAAG 300
Query 341 GAGAACGAAGAGAAGAACGATAAGTGGCACCGTGTGGAGAGAGCTAGTGGGAAGTTTATG 400
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GAGAACGAAGAGAAGAACGATAAGTGGCACCGTGTGGAGAGGGCTAGTGGGAAGTTTATG 360
Query 401 AGAAGGTTTAGGTTACCGGAGAATGCAAAGATGGAAGAAGTGAAGGCAACAATGGAGAAT 460
|| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 361 AGGAGGTTCAGGTTGCCGGAGAATGCAAAGATGGAGGAAGTGAAGGCAACTATGGAGAAT 420
Query 461 GGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCTGAGAAGAAGCCTCAAGTCAAGTCCATC 520
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 421 GGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCGGAGAAGAAGCCTCAAGTCAAGTCGATT 480
Query 521 GATATCTCCGGGGCTAATTGAATATGAAGAT-GAAGATGAAATATTTGGTGTGTCAAATA 579
|||||||| || |||||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 481 GATATCTC-GG--CTAATTGAATATGAAGATTGAAAATGAAG-ATTTGGTGTGTGAAATA 536
Query 580 AAAAGCTTGTGTGCTTAAGTTTGTGttt-tttt--CTT--GGCTT-GTTGTGTTATGAAT 633
||||||||||||||||||| |||||||| |||| ||| || || |||||||| ||||
Sbjct 537 AAAAGCTTGTGTGCTTAAGCTTGTGTTTCTTTTTTCTTTTGGGTTTGTTGTGTTGTGAAA 596
Query 634 TTGTGGCTTT-TT-CTAATATTAAATGAATGTAAGATCTCATTATAATGAATAAACAAAT 691
|||| ||||| || |||| || | |||||||||||||||||||||||||||||||| |||
Sbjct 597 TTGTCGCTTTCTTTCTAAAATCATATGAATGTAAGATCTCATTATAATGAATAAACGAAT 656
Query 692 GTTTCTAT 699
||||||||
Sbjct 657 GTTTCTAT 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5