BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59730.1
Length=2294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950719 jgi|Araly1|950719|scaffold_802606.1 2765 0.0
> Ahg950719 jgi|Araly1|950719|scaffold_802606.1
Length=1961
Score = 2765 bits (1497), Expect = 0.0
Identities = 1760/1887 (93%), Gaps = 17/1887 (1%)
Strand=Plus/Plus
Query 139 aaaaataaaaacagagcaaa-ccacaaaaaTGGGGAAGCATTTATTCCGATCATCTCCTC 197
||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 AAAAA-AAAAACAGA-AAAAGCCACAAAAATGGGGAAGCACTTATTCCGATCATCTCCAC 58
Query 198 CACCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 257
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CGCCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 118
Query 258 GCAACATCAACACCGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGACT 317
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 GCAACATCAACGCTGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGAGT 178
Query 318 TCCTCTTCTCCACCAACAGTCGTCGTGAAGCAGAGGAGTTTGTTACAGCCGTTAGACATC 377
||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 179 TCCTCTTCTCCACCAACAGCCGTCGTGAAGCAGAGGAGTTTGTGACTGCCGTTAGACATT 238
Query 378 TACAAAGCACGATGCATCGTTTGGTTTCCGTTAACCCTTCCTCGGAGAAGCTAATCTACG 437
|||| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 239 TACAGAGCACCATGCATCGTTTGGTTTCCGTGAATCCTTCGTCGGAGAAGCTAATCTACG 298
Query 438 CACAGAATCTAATGCAATCGGCGATGAAGCTTCTCGAATCAGAGTTTCATCGTGTTTTAA 497
| |||||||| |||||||||||||||| |||||| |||||||||||| ||||||| || |
Sbjct 299 CGCAGAATCTTATGCAATCGGCGATGAGGCTTCTTGAATCAGAGTTTTATCGTGTCTTGA 358
Query 498 AAGCGAACCGTGAGTATTTAGATCCTGAATGTGTCTCTGTACGTTCTTACAGATCATCGA 557
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct 359 AAGCAAACCGTGAGTATTTAGATCCGGAATCCGTCTCTGTACGTTCTTACAGATCTTCAA 418
Query 558 GATTCAGTACTTCGACTACGACTAGTGTCTCCGATTCCGAAGACGAAAGCAGTTACGAAG 617
|||||||| ||||||||||||| ||||| |||||||| |||||||||| || ||||||||
Sbjct 419 GATTCAGTTCTTCGACTACGACCAGTGTTTCCGATTCAGAAGACGAAATCACTTACGAAG 478
Query 618 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCAATGGATGATCTCA 677
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCCATGGATGATCTCA 538
Query 678 AGATGATTGCTGATTGTATGATCTCTACCGGCTACGCTAAGGAATGCGTTAGGGTTTATA 737
||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 539 AGATGATTGCTGATTGTATGATCTCAACTGGTTACGCTAAAGAATGCGTTAGGGTTTATA 598
Query 738 AAACCGTACGGAAATCGATTGTTGATGAGACGCTGCATAATCTGCAAATGGAGAGATTCA 797
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 599 AAACCGTACGGAAATCGATTGTTGATGAGACTCTGCATAATCTGGGAATGGAGAGATTCA 658
Query 798 ATCTTCATCAGGTTCAGAAAATGGATTGGGAGATTCTCGAATCAAAGATCAAAACATGGC 857
||||||||||| ||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 659 ATCTTCATCAGATTCAGAAAATGGATTGGGAGATTCTTGATTCGAAGATCAAAACATGGT 718
Query 858 TAAAAGCTGTGAAATTAGCTGTTAGAAAATTGTTCTTCGGTGAGAGGATTTTAGCTGATC 917
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 719 TAAAAGCTGTGAAATTAGCTGTTCGATCTTTGTTCTTCGGTGAGAGGATTTTAGCTGATC 778
Query 918 ATGTTTTCTCTTCCTCTGGTTTAATCGTTGAATCTTCTTTCACTGAGATTACTCAAGAAG 977
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 ATGTTTTTTCTTCCTCTGGTTTAATTGTTGAATCTTCTTTCACTGAGATTACTCAAGAAG 838
Query 978 GAGCATTGATTCTCTTCACTTTCCCGGAATATGCTTCCAAGATCAA-AAAGTTAACTCCG 1036
|||| |||||||||||||||||||||||||||||| | |||||||| ||| | ||||||
Sbjct 839 GAGCTTTGATTCTCTTCACTTTCCCGGAATATGCTGCGAAGATCAAGAAACT-AACTCCT 897
Query 1037 GAGAAAATGTTTCGGTTTCTGGATATGTATGAAGCTCTTGCGAATCTCTATGTTGAGATT 1096
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 898 GAGAAAATGTTTCGGTTTCTTGATATGTATGAAGCTCTTGCGAATCTCTACGTGGAGATT 957
Query 1097 GAATCAATCTTCTACTTCGAATCAGCTGCTGCGGTTAGATCTCAGGTGATAAACTCGTTA 1156
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 958 GAATCGATTTTCTACTTTGAATCAGCAGCTGCGGTTAGATCTCAGGTGATTAACTCGTTA 1017
Query 1157 GCTAGACTCGGCGATGCGACGAGGTTGATGATGACGGATTTCGAATCGGCGATTCAGAAA 1216
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTAGACTCGGTGATGCTACGAGGTTGATGATGACGGATTTCGAATCGGCGATTCAGAAA 1077
Query 1217 GAAACCTCGAAGACTCCGATCATCGGTGGTGGTGTTCATCCTCTGACTCGTTACGTTATG 1276
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 GAAACTTCGAAAACTCCGATCATCGGCGGTGGTGTTCATCCTCTGACTCGTTACGTTATG 1137
Query 1277 AATTACCTCTCCTTCCTCGCTGATTACAGTGATTCCATCGCTGCGATATTCGAAAACTGG 1336
|||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||
Sbjct 1138 AATTACCTCTCCTTCCTCGCCGATTACAGTGAATCAATCACTGCGATATTCGAAAACTGG 1197
Query 1337 AAGCTGAGTGTGCCGACGCCGTTGCCGGATTCTTTATACATAAGCGGCGGCGATGAAGCG 1396
||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1198 AAGCTAAGTGTTCCGACTCCGTTACCGGATTCTTTATACATCAGCGGCGGCGACGAAGCG 1257
Query 1397 AATCCGGAGGATCTGTATTCGTCTCCGGTCTCTGTACGTA-TCGCTTGGGTGATTTTACT 1455
|||||||||||| ||||||| |||||||| |||||||| | |||||||||||||||||||
Sbjct 1258 AATCCGGAGGATTTGTATTCATCTCCGGTGTCTGTACG-AGTCGCTTGGGTGATTTTACT 1316
Query 1456 CACGCTTTGTAAAATCGACGGTAAAGCTCAGCCGTATAAAGACGTTGCTTTGTCTTATCT 1515
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 CACGCTCTGTAAAATCGACGGCAAAGCTCAGCCGTATAAAGACGTTGCTCTGTCTTATCT 1376
Query 1516 CTTCCTCGCTAACAATCTCCAATACGTCGTCGTTAAAGTCCGATCGTCGACTCTGAAGGT 1575
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1377 CTTCCTCGCCAACAATCTCCAATACGTCGTCGTTAAAGTCCGATCGTCGAATCTGAAGCT 1436
Query 1576 TCTTCTCGGAGACGATTGGGTGTTTAGGCATGAAGAGAAGGTGAAGCTGTATGCTGATAA 1635
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 TCTTCTCGGCGACGATTGGGTGTTTAGGCACGAAGAGAAGGTGAAGCTGTATGCTGATAA 1496
Query 1636 GTTTGAGAAGCTTGCGTGGGGGAAAGTGCTGGATTTACTACCGGAGATTCCGACGGATGA 1695
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 1497 GTTTGAGAAGCTTGCGTGGGGGAGAGTGCTGGATTTATTACCGGAGATTCCGACGGAGGA 1556
Query 1696 GATTTCGCCGGAGGAAGCTAAGGTTTTGGT-GGCGAGATTCAACGATGAGTTTGAGACGT 1754
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1557 GATTTCGCCGGAGGAAGCTAAGGTTTTGGTCGG-GAGATTCAACGATGAGTTTGAGACGT 1615
Query 1755 CGTACCGGAAACAGACTTCGTGGGTTATACCCGACCCGAAACTTAGGGACCAGATTAAAA 1814
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1616 CGTACCGGAGACAGACTTCGTGGGTCATACCCGACCCGAAACTTAGGGATCAGATTAAAA 1675
Query 1815 TCACGTTGAGTCAGAAACTTATGCTGGTTTGTACCGAGTTTTACCGGATGAACCGGTTTG 1874
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TCTCGTTGAGTCAGAAACTTATGCTGGTTTGTACCGAGTTTTACCGGATGAACCGGTT-- 1733
Query 1875 CATATGGTATGGTTGGAGATAATGAGGCTATT-TCCAGATATACCCCTGAAGATATTGGG 1933
| ||| ||| |||||||||||||||| | || |||||||||||||||||||| ||
Sbjct 1734 C----GGTTTGGCTGGAGATAATGAGGCTGGTGTC-AGATATACCCCTGAAGATATAGGA 1788
Query 1934 AATTACCTCTCGGATCTTTACTTTGGGTCTAGAGGCTCAGGGAGTGTTTCGACAGCTGGT 1993
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1789 AATTACCTCTCGGATCTGTACTTTGGGTCTAGAGGCTCCGGGAGTGTTTCGACAACTGGT 1848
Query 1994 GGGTCTGGATCCGGATCCGGATCCGGA 2020
|| ||||||||||||||||||||||||
Sbjct 1849 GGATCTGGATCCGGATCCGGATCCGGA 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86388675660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5