BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59750.2
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496108 jgi|Araly1|496108|fgenesh2_kg.8__1924__AT5G59750.1 2004 0.0
> Ahg496108 jgi|Araly1|496108|fgenesh2_kg.8__1924__AT5G59750.1
Length=1738
Score = 2004 bits (1085), Expect = 0.0
Identities = 1198/1253 (96%), Gaps = 5/1253 (0%)
Strand=Plus/Plus
Query 548 AGTTTGTGATCGTTGTTGACGATGAAACCGGAGATGTTGAAGGGAATCTGATCATGGCTG 607
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 454 AGTTTGTGATCGTTGTTGACGATGAAAATGGGGATGTTGAAGGGAATCTGATTATGGCGG 513
Query 608 CAACTCTTACGAGTCCAAAAGACATAGCTTTTCTGATTAAGAATGGTTCAGGTATTGTCT 667
|| |||| |||||||||||||| ||||| |||||||||||||||||||| || |||||||
Sbjct 514 CATCTCTAACGAGTCCAAAAGATATAGCCTTTCTGATTAAGAATGGTTCTGGAATTGTCT 573
Query 668 CAGTTGGTATGAAGAAAGAAAACCTTGAAAGATTAAGCCTTACACTTATGTCACCTGAAA 727
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 574 CAGTTGGGATGAAGAAAGAATACCTCGAAAGATTAAGCCTTACACTCATGTCACCTGAAA 633
Query 728 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACCATCACTGTGGATGCAAAATCTGGAA 787
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 634 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACTATCACTGTGGATGCAAAATCCGGAA 693
Query 788 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCTCTCG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 694 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCCCTCG 753
Query 848 ATGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 907
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AAGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 813
Query 908 GTGGAGTTTTAAGGAGAGCTGGTCACACCGAAGCTTCAGTGGATCTAATGATATTGGCTG 967
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 814 GTGGAGTTTTAAGGAGAGCCGGTCACACTGAAGCTTCAGTGGATCTAATGATATTGGCTG 873
Query 968 GTTTACGTCCCCTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCTATGGCTT 1027
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 874 GTTTACGTCCTGTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCAATGGCTT 933
Query 1028 CACTGCCGTATATGAAAAAGCTTGCTACGGAACATGATATCCCCATTGTATCGTTGACTG 1087
|||| || |||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 934 CACTACCTTATATGAAAAAGCTTGCTACAGAACATGACATTCCCATTGTATCGTTGACTG 993
Query 1088 ATTTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTTGAGAGAATCACAGTGTCTCGTT 1147
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 994 ATCTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTGGAGAGAATCACGGTGTCTCGTT 1053
Query 1148 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1113
Query 1208 AAAATATCGCCCTCGTTAAGGGAAACGTTGGAAATGGTGAGGACATTCTGGTGCGAGTGC 1267
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1114 AGAATATCGCCCTCGTTAAAGGAAACGTTGGAAATGGTGAGGACATTCTGGTACGAGTGC 1173
Query 1268 ATTCAGAGTGCTTGACAGGAGACATTTTTGGCTCAGCACGGTGTGACTGTGGAAACCAAT 1327
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1174 ATTCAGAGTGCTTAACAGGAGACATTTTTGGCTCAGCGCGGTGTGACTGTGGAAACCAAT 1233
Query 1328 TGGACT-TAGCCATGGAGTTAATCGAGAAAGAGGGAAGAGGAGTTGTTGTGTATCTCCGT 1386
|||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1234 TGGA-TCTAGCCATGGAGCTAATCGAGAAAGAGGGAAGAGGAGTCGTTGTGTATCTTCGT 1292
Query 1387 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1352
Query 1447 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1412
Query 1507 TACGGTATCGGTGCTCAGATGCTACGAGACATAGGAGTGAGAACAATGAGACTAATGACG 1566
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1413 TACGGTATCGGTGCTCAGATGCTAAGGGACATAGGAGTGAGAACAATGAGACTGATGACG 1472
Query 1567 AATAACCCTGCCAAATTCACTGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1626
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AATAACCCCGCCAAGTTCACAGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1532
Query 1627 CCGGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1686
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 CCAGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1592
Query 1687 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCATTAGCTTGACCCAAAAGCTTT 1746
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||
Sbjct 1593 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCTTTGGCTTGACC-AAAAGCCTT 1651
Query 1747 TGATAGAAAC-ACACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1798
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 TGATAGAAACGA-ACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1703
Score = 521 bits (282), Expect = 5e-147
Identities = 408/463 (88%), Gaps = 31/463 (7%)
Strand=Plus/Plus
Query 1 AATT-TTAAAATTTTCAGATTTTGGTTTTGTGTTGAGAACAACTCCAAAGAGACGAGAAG 59
|||| || |||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct 19 AATTCTT-AAATTTTCAGATTTGGGTTTTGTGTTGAAAACAACTCCAAGGAGACGAGAAG 77
Query 60 -C-AGCGAATCGTACG-AGCAGAGAGATATATGTTTCATTACGTCGATGATGGATTCTGC 116
| ||||||||||||| || | |||||||||||||||||||||| |||||||||||||||
Sbjct 78 CCGAGCGAATCGTACGAAG-AAAGAGATATATGTTTCATTACGTAGATGATGGATTCTGC 136
Query 117 -TT-TAT-ATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTTGTATAGTTC 173
|| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 137 TTTATATCATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTCGTATAGGTC 196
Query 174 TCCTAGGTTTGCTAATACTTGCTGGAGATTG-GTTAGTCGTTCAAGTTGGGAGATCAAGG 232
|||| ||||||||||||||||||||||||| || | | ||||| ||||| |||||||||
Sbjct 197 ACCTATGTTTGCTAATACTTGCTGGAGATTGAGTGA-TGGTTCACGTTGGAAGATCAAGG 255
Query 233 CTAGTGAGAATAGTGATCGCAATGTGTTCGATGAAAATCCTGTTAG-GAAAACCGACGGG 291
|||||||||||||||||||||| |||||||| |||| |||||| || | || |||||| |
Sbjct 256 CTAGTGAGAATAGTGATCGCAACGTGTTCGACGAAAGTCCTGTGAGAGGAA-CCGACGAG 314
Query 292 TCGTTGTTTGATTCTGCTTCGTTTGAGACAGTTGACGCGGAAATCACGCCTGAGACTGAT 351
|||||||||||||||| || | | | | || | ||||||| ||||||||||||
Sbjct 315 TCGTTGTTTGATTCTG-TT-G----A--C-G----CG-G-AAATCACTCCTGAGACTGAT 359
Query 352 GATTTCTTCGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTACTCAAGGTTATTCCTCT 411
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GATTTCTTTGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTTCTCAAGGTTATTCCTCT 419
Query 412 ATTGAACT-TGCTCTTCAAGCTCTACGCAAAGGAAAGGTTTGT 453
||||| | ||||||||||||| |||||||||||||| |||||
Sbjct 420 GTTGAA-TATGCTCTTCAAGCTTTACGCAAAGGAAAG-TTTGT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5