BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59760.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496109 jgi|Araly1|496109|fgenesh2_kg.8__1925__AT5G59760.1 1120 0.0
> Ahg496109 jgi|Araly1|496109|fgenesh2_kg.8__1925__AT5G59760.1
Length=771
Score = 1120 bits (606), Expect = 0.0
Identities = 738/797 (93%), Gaps = 28/797 (4%)
Strand=Plus/Plus
Query 2 TGTATATGCACATACTATATATAGGGTCCAAGCAACCATTATAAAGGATCATTCTTAGTC 61
|||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 1 TGTATATGCATGTACTATATATAGGTTCCAAGCAACCACTATAAAGGATCATTATTAGTC 60
Query 62 TT-ACAACAGAGTATAACAAAACACAGACACTGATCAATGGATGTCTTATATTCTTCTAA 120
|| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 TTGA-AACAGAGTATAACAAAACACACACATTGATCAATGGATGTCTTATATTCTTCTAA 119
Query 121 TTGGCTTCATCAAGAGAGCATTGATGAGATGAGGCAGAATCTACAGAGCACTCTGTTCGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTGGCTTCATCAAGAGAGCATTGATGAGATGAGGCAGAATCTACAGAGCACTCTGTTCGA 179
Query 181 ACTAGAGACACTGAAAATGGAAGCTAATGAGAAATCAAGAACACACAGAGAAGAAGTGAA 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 ACTAGAGACACTGAAAATGGAAGCTAATGAGAAATCAAAAACACACAGAGAAGAAGTGAA 239
Query 241 CCAACTTCTCAATCTCCTCAAATTCACTCAGCAAGAAAGAGACGAAGCTAGACAACAGTT 300
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct 240 CCAACTTCTCAATCTCCTCAAATTCACTCAACAAGAACGAGACGAAGCTAGACAACAACT 299
Query 301 ATCTCAATTCATCTTCCATACCCAACAAAACCCTAATTCAAGAAGC-CTCACTAAATCAA 359
||| ||||||||| | | | |||||||||| |||||||||| | |||| ||||||
Sbjct 300 ATCCCAATTCATC-T---T---C--CAAAACCCTACTTCAAGAAGCAC-CACTGAATCAA 349
Query 360 ACAGCTTCTCTCACTCTCAAGATGTATCTTCTTCTTCTTCCTCAGAACTCTCCACCTTCC 419
|||| || | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 350 ACAG---CT-T--CTCTCAAGATGTATCTTCTTCTTCTTCCTCAGAACTCTCCAGCTTCC 403
Query 420 TCAACATCCATCCTCAGCCGTTGACGAATCTTGAAGATCCAACGGCTCATAATCATCATC 479
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 404 TCAACGTCAATCCTCAGCCGTTGATGAATCTTGAAGTTCCAACGGCTCATAATCATCATC 463
Query 480 AGCAGATTGATCCTCTAGACGTTCTTGTGATGGGGAAAGCTTTTCCAGAAACGGGAAAGC 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGC---TTGATCCTCTAGACGTTCTTGTGATGGGGAAAGCTTTTCCAGAAACGGGAAAGC 520
Query 540 TTTTGAAAGCGGTGGTTGAAGCTGGACCGCTTCTTGAAACGCTTCTTTTGGCTGGACCGC 599
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 521 TTTTGAAAGCGGTGGTTGAAGCTGGACCGCTTCTTCAAACGCTTCTTTTGGCAGGACCGC 580
Query 600 TACCAAAATGGATAAACCCGCCGCCTCAAACGCAATCGCAGCGTTTTGAGTTACCTTCTA 659
||||||||||||| ||||| |||||||||||||| || | ||||||||||||||||
Sbjct 581 TACCAAAATGGATCAACCCACCGCCTCAAACGCA---GC-G--TTTTGAGTTACCTTCTC 634
Query 660 TCTCGTTTAGAGGGTCCGATGTTGATAGTAAATGTGATTCTATGACGTGTTCTGGTTCGG 719
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 635 TCTCGTTTAGAGGGTCCGAGGTTGATAGTAAATGTGATTCTCTGACGTGTTCTGGTTCGG 694
Query 720 TTAATAGTTTTGGGTTCGGTTCGAGTTTGGTTATCGATCAATCGATGTTAACCGGAAAGA 779
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 695 TTAATAGTATTGGGTTCGGTTCGAGTTTGGTTATCGATCAATCAATGCTAACCGGAAAGA 754
Query 780 GGCAGAGATTAGAGTAG 796
|||||||||||||||||
Sbjct 755 GGCAGAGATTAGAGTAG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5