BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59790.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496114 jgi|Araly1|496114|fgenesh2_kg.8__1930__AT5G59790.1 2379 0.0
> Ahg496114 jgi|Araly1|496114|fgenesh2_kg.8__1930__AT5G59790.1
Length=1690
Score = 2379 bits (1288), Expect = 0.0
Identities = 1606/1748 (92%), Gaps = 68/1748 (4%)
Strand=Plus/Plus
Query 1 GCCCTTTGTCTCTCGCATCCTCATTTTTCAAAATCT--CACTCTCTCTTTCCTCTCTGCT 58
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||
Sbjct 1 GCCCTTTGTCTCTCGCATCC-CATATTTCAAAATCTCACACTCTCTCTTTCCTCTCTTCT 59
Query 59 TTCATTTGCTTTCTATAAATCCAAACTCTTAAACAAAAGATTTTGTCTTTCCATCAACAT 118
||||||| |||||||||||||||||||| |||||||||||||||||| || || |||
Sbjct 60 TTCATTTACTTTCTATAAATCCAAACTCATAAACAAAAGATTTTGTC-TT---TC--CAT 113
Query 119 CAACTCCCTCATAAACTCCCACAAAGACTCTCACTTTAAAACTCCTTCACTACTTCGTGT 178
||| | | | | ||||||||||| ||||||||| | |||||||||
Sbjct 114 CAA------C----A-T----C----ACTCTCACTTT-AAACTCCTT--C-ACTTCGTGT 150
Query 179 TCTTCGTCTctttttctttttttctttcacttttcCATAAGCAAAGAAACAAAAAGGATG 238
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 151 TCTTCGTCT-ATTTTCTTTCTTTCTTTCACTTTTCCACAAGCAAAGAAACAAAAAGGATG 209
Query 239 AGTTCAAGAGTGTTCAGAGCAACACCAGATAACAACTATTTGGTCCCCAGGAGATCCAAA 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 210 AGTTCAAGAGTGTTCAGAGCAACACCAGATAACAACTATCTGGTCCCCAGGAGATCCAAA 269
Query 299 GACCAACAAGACACCAGTCCCGACCGTAACCGAATCTGGTCTGAGCCTCGTCTTAAACCC 358
|||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 270 GACCAACAAGACTCCAGTCCCGACCGTAACCGAATCTGGTCGGAGCCTCGTCATAAACCG 329
Query 359 GTCGTTAACCGGAAAGTCCCAGTCGTCTATTATCTCTGCCGGAATGGTCAGCTTGACCAT 418
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 330 GTCGTTAACCGGAAAGTCCCAGTCGTCTACTATCTCTGCCGCAATGGTCAGCTTGACCAT 389
Query 419 CCTCATTTCATCGAAGTCACTCTCTCTTCCCACGATGGTCTTTATCTCAAAGATGTGATA 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CCTCATTTCATGGAAGTCACTCTCTCTTCCCACGATGGTCTTTATCTCAAAGATGTGATA 449
Query 479 AACCGCTTGAATGATCTAAGAGGGAAAGGCATGGCAAGTCTCTACTCTTGGTCTTCGAAA 538
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 450 AACCGCTTGAATGATCTTAGAGGGAAAGGCATGGCAAGTCTCTACTCTTGGTCTTCCAAA 509
Query 539 CGGAGCTACAAAAATGGATTTGTCTGGCACGATTTATCGGAGGACGATTTCATCTTCCCT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CGGAGCTACAAAAATGGATTTGTCTGGCACGATTTATCGGAGGACGATTTCATCTTCCCG 569
Query 599 GTTCAAGGTCAAGAATATGTTCTCAAAGGCTCTGAGGTTCTTGATTCTTGTCTTATCTCA 658
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 570 GTGCAAGGTCAAGAATACGTTCTCAAAGGCTCTGAGGTTCTTGATCCTTGTCTTATCTCA 629
Query 659 AACCCAAGAAGCCTCCTCGAAACGTCGTCGTTTAGAGACCCAAGATCTTTAAATCCAGAT 718
||||||||||||||||| ||||||||||| ||||| || ||||||||| |||| || |||
Sbjct 630 AACCCAAGAAGCCTCCTTGAAACGTCGTCTTTTAGGGATCCAAGATCTCTAAACCCTGAT 689
Query 719 AAAAACTCCGGCGATGATATCCCGGCGGTGATAAATCGACGGAGGAACCAGTCTTGGAGC 778
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 690 AAAAACTCCGGCGATGATATCCCGGCGGTGATAAATCGCCGGAGAAACCAGTCTTGGAGC 749
Query 779 TCTATCGATCTCAGCGAGTACAAAGTGTACAAAGCAACCGAGTCAAGCGCCGAGTCAACT 838
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 750 TCCATCGATCTCAGCGAGTACAAGGTTTACAAAGCAACCGAGTCAAGCGCCGAGTCAACT 809
Query 839 CAAAGACTCGCTGCGGACGCTTCTACTCAGACTGACGATAGACGACGGAGGAGAAGACCG 898
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 810 CAAAGACTCGCTGCAGACGCTTCTACTCAAACAGACGATAGACGACGGAGGAGAAAACCG 869
Query 899 GCGAAAGAGGAAATAGAAGAGGTGAAAAGTCCGGCGAGTTATGAGAATCAGAGTACAGAG 958
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 870 GCGAAAGAGGAAATAGAAGAGGTGAAAAGTCCGGTGAGTTACGAGAACCAGAGTACAGAG 929
Query 959 CTGAGCAGAGACGAGATATCTCCTCCACCGTCGGATTCAAGTCCCGAGACATTAGAGAAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CTGAGCAGAGACGAGATATCTCCTCCACCGTCGGATTCAAGTCCCGAGACATTAGAGAAT 989
Query 1019 CTGATCAAAGCCGATGGACGGCTGATATTGCGTCCTAGCGAAAGCAGCACCGATCATCGG 1078
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 990 CTGATCAAAGCAGATGGACGGCTGATATTGCGTCCTAACGAAAGCAGCACCGATCATCGG 1049
Query 1079 ACGGTCGAGAGTTTATCCAGCGGAAGAATGAGAGCTTCGGCTGTGTTAATGCAGCTGATA 1138
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1050 ACGGTCGAGAGTTTATCCAGCGGAAGAATGAGAGCTTCGGCTGTATTAATGCAGCTGATA 1109
Query 1139 TCGTGTGGTACGATGTCGTTTAAAGAATGTGGGCCTGTTTTGTTGAAAGATCAAGGGCTG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TCGTGTGGTACGATGTCGTTTAAAGAATGTGGGCCTGTTTTGTTGAAAGATCAAGGGCTA 1169
Query 1199 GCGTTGAACGGGCGTAGCGGGTGTACGATAACGCGAGGAGCAGAGGATAATGGTGAGGAG 1258
||||||| |||||||||| ||||||| ||||||||||||||||||||||| || |||
Sbjct 1170 CCGTTGAATGGGCGTAGCGAGTGTACGTTAACGCGAGGAGCAGAGGATAATTATGGGGAT 1229
Query 1259 AGGGTAGATAAGGAATTAAAGAGTTTTGGAAGGGTACAATTGGAAGATAAGGAGTATTTT 1318
|||||||| |||||||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct 1230 AGGGTAGAAAAGGAATTAAAGAGCTTAGGAAGGGTAAAACTGGAAGATAAGGAGTATTTT 1289
Query 1319 AGCGGCAGTTTGATTGAGACCAAGAAGGAGCTTGTTCCTGCTTTGAAAAGATCTTCTTCT 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1290 AGCGGCAGTTTGATTGAGACCAAGAAGGAACTTGTTCCTGCTTTGAAAAGATCTTCTTCT 1349
Query 1379 TACAATGCTGACAGGTGTTCAAGAATGGGACCAACGACGGAGAAGGATGAGGAAGAAGCG 1438
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1350 TACAATGCTGACAGGAATTCAAGAATGGGACCAACGGCGGAGAAGGATGAGGAAGAGGCG 1409
Query 1439 GTTCGAGCTAAGTGCATTCCGAGAAAACCAAAGCCGGTGGCTAAAAGGAACAATGGTGGG 1498
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1410 GTTCGAGCTAAGTGCATTCCGAGAAAACCAAAGCCGGTGGCTCTAAGGAACAATGGTGGG 1469
Query 1499 CAGCAGTAACAAAAACGGCACGATGAGTCTAACAAGCTTATTTTGGGTTT-AAGTAG-A- 1555
|||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |
Sbjct 1470 CAGCAGTAACAAAAACGGCACGC--AGTCTAACAAGCTTATTTTGTGTTTTAAGTAGCAG 1527
Query 1556 AGA-GA-A-AAGTAGAATAGGGAATGATGAGTTTGTAAAGCATTGTGAATTGTGTAGGTA 1612
||| || | ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1528 AGAAGAGATAAGAAGAATAGGGAATGATGAGTTTGTTAAGCATTGTGAATTGTGTAGGTA 1587
Query 1613 AACTATAACAATTCCTTTGCATGCTaaaaaaaTTAAGAGTTAACATGATGGGTGAATATA 1672
|| | || || || ||| |||||||||||||||||| |||||
Sbjct 1588 AA--A-AA-AA---------AT--TAA---------GAGTTAACATGATGGGTGCATATA 1623
Query 1673 -TAATATATAA-TGTTGTAGTCTGAGCCTAGGTGTCTTTTGAGGTTAATTTCAATCTGGT 1730
|| | ||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| |
Sbjct 1624 ATA-TGTATAAATGTTGTAGTTTGAGCCTAGGTGTCTTTTGATGTTCATTTCAATCTGAT 1682
Query 1731 TTTCTTTT 1738
||||||||
Sbjct 1683 TTTCTTTT 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5