BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59810.1 Length=2587 Score E Sequences producing significant alignments: (Bits) Value Ahg950730 jgi|Araly1|950730|scaffold_802617.1 3574 0.0 Ahg922854 jgi|Araly1|922854|scaffold_104135.1 246 5e-64 Ahg922853 jgi|Araly1|922853|scaffold_104134.1 233 4e-60 Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819 100 4e-20 > Ahg950730 jgi|Araly1|950730|scaffold_802617.1 Length=2372 Score = 3574 bits (1935), Expect = 0.0 Identities = 2232/2376 (94%), Gaps = 18/2376 (1%) Strand=Plus/Plus Query 152 GAGAACTAGTA-TTTTGTATATGAGTATGACGAGAAGATATTCGAG-TACTCAATACTCA 209 ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1 GAGAACTAGTATTTTTGTATATGAGTATGACGAGAAGATATTCG-GCTACTCAATACTCA 59 Query 210 AACAAAATGAGCCTCCAAAGTTTATCAtctcttcttctcctcgtcactctctttttctct 269 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 60 AACCCAATGAGCCTCCAAAGTTTATCATCTCTTATTCTCCTCGTCACTCTCTTTTCCTCT 119 Query 270 cctgcttttgctcttAAAAAGTCCTACATAGTGTACTTGGGATCTCACGCCCAT-CTTCC 328 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 120 CCTGCTTTTGCTCTTAAAAAGTCCTACATAGTGTACTTGGGATCTCATGCCCATCCTT-C 178 Query 329 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTTCTCGCCTC 388 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 179 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTCCTCGCCTC 238 Query 389 TTTCGTTGGAAGCCATGAGAATGCAAAAGAAGCCATCTTTTACTCATACAAGAGACATAT 448 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 239 TTTCGTTGGAAGCCATGAAAATGCACAAGAAGCCATCTTTTACTCATACAAGAGACATAT 298 Query 449 CAATGGCTTCGCCGCAATTCTTGACGAAAATGAAGCTGCAGAAATCGCCAAGCATCCTGA 508 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 299 CAATGGCTTCGCCGCAGTTCTTGACGAAAATGAAGCTGCTGAAATCGCCAAGCATCCTGA 358 Query 509 TGTAGTCTCTGTATTCCCCAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 568 ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TGTTGTCTCTGTAATCCCAAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 418 Query 569 CATGCTCCTTGCGAAAAATGGTGTTGTTCACAAGTCCTCTCTTTGGAATAAAGCAGGATA 628 ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 419 CATGCTCCTGGAGAAAAATGGTGTTGTTCACAAGTCCTCTCTATGGAATAAAGCAGGATA 478 Query 629 CGGAGAGGATACAATCATCGCTAACTTAGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 688 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 479 TGGAGAGGACACAATCATCGCTAACTTGGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 538 Query 689 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 598 Query 749 TCCTTGCAACAGGAAGCTCATCGGTGCTAGATACTTCAACAAAGGTTACTTAGCTTACAC 808 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 599 TCCTTGCAACAGGAAGCTCATTGGTGCTAGATACTTCAACAAAGGTTACTTAGCCTACAC 658 Query 809 AGGCCTTCCTTCTAACGCCTCCTATG-AAACCTGTCGTGACCACGATGGTCACGGTAGCC 867 ||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 659 AGGTCTTCCCTCTAACGCCTCCT-TGGAAACCTGTCGTGACCACGATGGTCACGGTAGCC 717 Query 868 ACACTCTTTCCACCGCGGCTGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGTATCGGGA 927 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 718 ACACTCTTTCCACCGCGGCCGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGCATCGGGA 777 Query 928 ATGGAACAGCCAGTGGTGGTTCTCCTAAAGCTAGAGTCGCGGCTTACAAGGTGTGCTGGC 987 |||| |||||||| || || ||||||||||||||||| |||||||||||||||||||||| Sbjct 778 ATGGGACAGCCAGCGGCGGCTCTCCTAAAGCTAGAGTTGCGGCTTACAAGGTGTGCTGGC 837 Query 988 CCCCTGTGGATGGCGCGGAGTGCTTTGATGCTGATATTTTGGCAGCGATTGAGGCTGCCA 1047 | |||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 838 CGCCTGTGAATGGCGCAGAGTGCTTTGATGCTGATATTTTGGCAGCTATTGATGCTGCCA 897 Query 1048 TCGAAGACGGCGTGGATGTTCTCTCGGCTTCAGTGGGAGGAGATGCTGGAGATTACATGA 1107 |||| ||||| |||||||||||||||||||||||||| ||||| || || |||||||||| Sbjct 898 TCGACGACGGTGTGGATGTTCTCTCGGCTTCAGTGGGTGGAGACGCCGGGGATTACATGA 957 Query 1108 GCGATGGTATAGCCATTGGATCCTTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1167 ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 958 GCGATGGCATTGCCATTGGATCATTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1017 Query 1168 CTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTGCACCATGGGTTATTA 1227 | ||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||| Sbjct 1018 CAGCTGGAAATTCAGGTCCTAAGGCTGGAACTGTCTCAAACGTAGCACCATGGATTATTA 1077 Query 1228 CAGTCGGTGCTAGCTCCATGGATCGGGAGTTTCAAGCTTTTGTTGAGCTCAAAAACGGCC 1287 ||||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||| Sbjct 1078 CAGTCGGAGCTAGCTCCATGGACCGAGAGTTTCAAGCCTTTGTTGAGCTGAACAACGGCC 1137 Query 1288 AAAGCTTCAAGGGAACAAGCCTCTCAAAGCCTTTGCCTGAAGAAAAGATGTATAGCCTCA 1347 ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct 1138 AAAGCTTCAAGGGAACAAGCCTCTCGAAGCCTTTGCCCGAAGATAAGATGTATAGCCTCA 1197 Query 1348 TCAGTGCTGCAGATGCTAATGTAGCCAATGGAAATGTGACAGATGCATTGCTATGCAAGA 1407 ||||||||| ||| ||||| || |||||||||||| ||| ||||||||||||||||||| Sbjct 1198 TCAGTGCTGAAGAAGCTAAAGTTTCCAATGGAAATGCGACTGATGCATTGCTATGCAAGA 1257 Query 1408 AAGGTAGCCTAGACCCGAAGAAGGTGAAAGGGAAGATCTTGGTGTGTCTGAGAGGAGACA 1467 ||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||||||| Sbjct 1258 AAGGTAGCCTAGACCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGTCTCAGAGGAGACA 1317 Query 1468 ACGCACGTGTGGACAAGGGA-ATGCAAGCGGCT-GCTGCTGGAGCTGCGGGAATGGTTCT 1525 |||||||||||||||| ||| | |||||| || ||||||||||||||||||||| |||| Sbjct 1318 ACGCACGTGTGGACAAAGGACA-GCAAGCA-CTCGCTGCTGGAGCTGCGGGAATGATTCT 1375 Query 1526 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1435 Query 1586 ACAAATTGACTACAAAGATGGTGAAACTTTGTTTTCTTACCTAAGTTCCACAAAAGATCC 1645 ||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||| Sbjct 1436 TCAAATCGACTACAAAGAAGGTGAAGTTTTGTTTTCGTACCTAAGTTCCACAAAAGATCC 1495 Query 1646 CAAAGGTTACATCAAAGCACCTACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1705 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1496 CAAAGGTTACATCAAAGCACCAACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1555 Query 1706 CTCTTTCTCTTCCAGAGGACCAAACACCATCACACCAGGG-ATCCTCAAGCCCGACATCA 1764 ||||||||||||||||||||| ||| |||||||||| ||| |||||||| || ||||||| Sbjct 1556 CTCTTTCTCTTCCAGAGGACCTAACTCCATCACACC-GGGCATCCTCAAACCTGACATCA 1614 Query 1765 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACGGAAGCCACGGGCCCTACAGACTTAG 1824 |||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| Sbjct 1615 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACCGAAGCCACAAGCCCTACGGACTTAG 1674 Query 1825 ACTCTGACAATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCCTGTCCTC 1884 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1675 ACTCTGACCATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCTTGTCCTC 1734 Query 1885 ACATCTCCGGTGTCGTTGGTCTTTTGAAAACACTTCACCCTCATTGGAGTCCTGCAGCTA 1944 ||||||| |||||||||||||| ||||| || |||||||| || ||||||||||| |||| Sbjct 1735 ACATCTCAGGTGTCGTTGGTCTCTTGAAGACTCTTCACCCCCAATGGAGTCCTGCCGCTA 1794 Query 1945 TCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGACGTAAGCCCATGGTTG 2004 ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct 1795 TCCGCTCAGCCATCATGACCACTTCAAGAACCAGAGACAACAGACGTAAGCCAATGGTTG 1854 Query 2005 ATGAATCCTTCAAGAAAGCAAATCCCTTCAGCTACGGTTCAGGCCATGTCCAACCCAATA 2064 ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1855 ATGAATCATTCAAGAAAGCAAATCCCTTCAGCTACGGCTCAGGTCATGTCCAACCCAATA 1914 Query 2065 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACCACAGGAGACTACTTGGACTTCCTCT 2124 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1915 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACAATAGGAGACTACTTGGACTTCCTCT 1974 Query 2125 GCGCCGTTGGCTACAACAACACCGTGGTTCAACTCTTTGCCGAGGACCCACAGTACACGT 2184 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 1975 GCGCCGTTGGCTACAACAACACCGTAGTTCAACTCTTTGCCGAGGACCCACAGTACATGT 2034 Query 2185 GTCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2244 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2035 GCCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2094 Query 2245 CGGGCTCTATCACCGTCACCCGAAAACTCAAAAACGTTGGACCACCTGCTACCTACAACG 2304 ||| ||||||||||||||| || ||||||| |||||||||||| || ||||||||||||| Sbjct 2095 CGGACTCTATCACCGTCACTCGCAAACTCACAAACGTTGGACCGCCAGCTACCTACAACG 2154 Query 2305 CTCGTTTCCGAGAGCCACTTGGAGTTCGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2364 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2155 CTCACTTCCGAGAGCCACTTGGAGTTAGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2214 Query 2365 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCTTGCCAGTGACGCCTT 2424 |||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||| Sbjct 2215 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCAAGTCAGCGAAGCCTT 2274 Query 2425 CAGGCTACGTTTTTGGAGAGCTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2484 | |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2275 CTGGCTACGTCTTCGGAGAGTTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2334 Query 2485 TCGTCGTCCAACTTT-----CAAGCTAGCCTCATTC 2515 |||||||| |||||| |||||||||||||||| Sbjct 2335 TCGTCGTCGAACTTTAATTTCAAGCTAGCCTCATTC 2370 > Ahg922854 jgi|Araly1|922854|scaffold_104135.1 Length=238 Score = 246 bits (133), Expect = 5e-64 Identities = 157/168 (93%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 1588 AAATTGACTACAAAGATGGTGAAAC-TTTGTTTTCTTACCTAAGTTCCACAAAAGATCCC 1646 ||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||| Sbjct 6 AAATTGACTACAAAGATGGTGAAGCTTTTGTTTTCGTACCTAAGTTCCACGAAAGATCCC 65 Query 1647 AAAGGTTACATCAAAGCACCTACCGCTACGC-TGAACACAAAGCCTGCTCCTTTCATGGC 1705 |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| Sbjct 66 AAAGGTTACATCAAAGCACCAACCGCTAC-CTTGAACACAAAGCCTGCTCCTTTCATGGC 124 Query 1706 CTCTTTCTCTTCCAGAGGACCAAACACCATCACACCAGGGATCCTCAA 1753 ||||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 125 CTCTTTCTCTTCCAGAGGACCTAACTCCGTTACACCAGGGATCCTCAA 172 > Ahg922853 jgi|Araly1|922853|scaffold_104134.1 Length=1087 Score = 233 bits (126), Expect = 4e-60 Identities = 151/163 (93%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1095 GGAGATTACATGAGCGATGGTATAGC--CATTGGATCCTTCCACGCCGTCAAAAACGGGG 1152 |||||||||||||||||||| || || |||||||||||||||||||||||||||||| | Sbjct 760 GGAGATTACATGAGCGATGGCATTGCGGCATTGGATCCTTCCACGCCGTCAAAAACGGAG 819 Query 1153 TGACGGTTGTGTGCTCTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTG 1212 |||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| |||| Sbjct 820 TGACGGTTGTGTGCTCTGCTGGGAATTCCGATCCTAAGTCTGGAACTGTCTCAAAGGTTG 879 Query 1213 CACCATGGGTTATTACAGTCGGTGCTAGCTCCATGGATCGGGA 1255 |||||||| |||||||||||||||||||||| ||||||||||| Sbjct 880 CACCATGGATTATTACAGTCGGTGCTAGCTCTATGGATCGGGA 922 > Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819 Length=195 Score = 100 bits (54), Expect = 4e-20 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1929 TGGAGTCCTGCAGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGA 1988 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2 TGGAGTCCTGCTGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAGACAACAGA 61 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97549117445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5