BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59810.1
Length=2587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950730 jgi|Araly1|950730|scaffold_802617.1 3574 0.0
Ahg922854 jgi|Araly1|922854|scaffold_104135.1 246 5e-64
Ahg922853 jgi|Araly1|922853|scaffold_104134.1 233 4e-60
Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819 100 4e-20
> Ahg950730 jgi|Araly1|950730|scaffold_802617.1
Length=2372
Score = 3574 bits (1935), Expect = 0.0
Identities = 2232/2376 (94%), Gaps = 18/2376 (1%)
Strand=Plus/Plus
Query 152 GAGAACTAGTA-TTTTGTATATGAGTATGACGAGAAGATATTCGAG-TACTCAATACTCA 209
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 GAGAACTAGTATTTTTGTATATGAGTATGACGAGAAGATATTCG-GCTACTCAATACTCA 59
Query 210 AACAAAATGAGCCTCCAAAGTTTATCAtctcttcttctcctcgtcactctctttttctct 269
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 60 AACCCAATGAGCCTCCAAAGTTTATCATCTCTTATTCTCCTCGTCACTCTCTTTTCCTCT 119
Query 270 cctgcttttgctcttAAAAAGTCCTACATAGTGTACTTGGGATCTCACGCCCAT-CTTCC 328
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 120 CCTGCTTTTGCTCTTAAAAAGTCCTACATAGTGTACTTGGGATCTCATGCCCATCCTT-C 178
Query 329 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTTCTCGCCTC 388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTCCTCGCCTC 238
Query 389 TTTCGTTGGAAGCCATGAGAATGCAAAAGAAGCCATCTTTTACTCATACAAGAGACATAT 448
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCGTTGGAAGCCATGAAAATGCACAAGAAGCCATCTTTTACTCATACAAGAGACATAT 298
Query 449 CAATGGCTTCGCCGCAATTCTTGACGAAAATGAAGCTGCAGAAATCGCCAAGCATCCTGA 508
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 CAATGGCTTCGCCGCAGTTCTTGACGAAAATGAAGCTGCTGAAATCGCCAAGCATCCTGA 358
Query 509 TGTAGTCTCTGTATTCCCCAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 568
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTTGTCTCTGTAATCCCAAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 418
Query 569 CATGCTCCTTGCGAAAAATGGTGTTGTTCACAAGTCCTCTCTTTGGAATAAAGCAGGATA 628
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CATGCTCCTGGAGAAAAATGGTGTTGTTCACAAGTCCTCTCTATGGAATAAAGCAGGATA 478
Query 629 CGGAGAGGATACAATCATCGCTAACTTAGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 688
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TGGAGAGGACACAATCATCGCTAACTTGGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 538
Query 689 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 598
Query 749 TCCTTGCAACAGGAAGCTCATCGGTGCTAGATACTTCAACAAAGGTTACTTAGCTTACAC 808
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 599 TCCTTGCAACAGGAAGCTCATTGGTGCTAGATACTTCAACAAAGGTTACTTAGCCTACAC 658
Query 809 AGGCCTTCCTTCTAACGCCTCCTATG-AAACCTGTCGTGACCACGATGGTCACGGTAGCC 867
||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 659 AGGTCTTCCCTCTAACGCCTCCT-TGGAAACCTGTCGTGACCACGATGGTCACGGTAGCC 717
Query 868 ACACTCTTTCCACCGCGGCTGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGTATCGGGA 927
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 718 ACACTCTTTCCACCGCGGCCGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGCATCGGGA 777
Query 928 ATGGAACAGCCAGTGGTGGTTCTCCTAAAGCTAGAGTCGCGGCTTACAAGGTGTGCTGGC 987
|||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 ATGGGACAGCCAGCGGCGGCTCTCCTAAAGCTAGAGTTGCGGCTTACAAGGTGTGCTGGC 837
Query 988 CCCCTGTGGATGGCGCGGAGTGCTTTGATGCTGATATTTTGGCAGCGATTGAGGCTGCCA 1047
| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 838 CGCCTGTGAATGGCGCAGAGTGCTTTGATGCTGATATTTTGGCAGCTATTGATGCTGCCA 897
Query 1048 TCGAAGACGGCGTGGATGTTCTCTCGGCTTCAGTGGGAGGAGATGCTGGAGATTACATGA 1107
|||| ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 898 TCGACGACGGTGTGGATGTTCTCTCGGCTTCAGTGGGTGGAGACGCCGGGGATTACATGA 957
Query 1108 GCGATGGTATAGCCATTGGATCCTTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1167
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGATGGCATTGCCATTGGATCATTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1017
Query 1168 CTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTGCACCATGGGTTATTA 1227
| ||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||
Sbjct 1018 CAGCTGGAAATTCAGGTCCTAAGGCTGGAACTGTCTCAAACGTAGCACCATGGATTATTA 1077
Query 1228 CAGTCGGTGCTAGCTCCATGGATCGGGAGTTTCAAGCTTTTGTTGAGCTCAAAAACGGCC 1287
||||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||
Sbjct 1078 CAGTCGGAGCTAGCTCCATGGACCGAGAGTTTCAAGCCTTTGTTGAGCTGAACAACGGCC 1137
Query 1288 AAAGCTTCAAGGGAACAAGCCTCTCAAAGCCTTTGCCTGAAGAAAAGATGTATAGCCTCA 1347
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1138 AAAGCTTCAAGGGAACAAGCCTCTCGAAGCCTTTGCCCGAAGATAAGATGTATAGCCTCA 1197
Query 1348 TCAGTGCTGCAGATGCTAATGTAGCCAATGGAAATGTGACAGATGCATTGCTATGCAAGA 1407
||||||||| ||| ||||| || |||||||||||| ||| |||||||||||||||||||
Sbjct 1198 TCAGTGCTGAAGAAGCTAAAGTTTCCAATGGAAATGCGACTGATGCATTGCTATGCAAGA 1257
Query 1408 AAGGTAGCCTAGACCCGAAGAAGGTGAAAGGGAAGATCTTGGTGTGTCTGAGAGGAGACA 1467
||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 1258 AAGGTAGCCTAGACCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGTCTCAGAGGAGACA 1317
Query 1468 ACGCACGTGTGGACAAGGGA-ATGCAAGCGGCT-GCTGCTGGAGCTGCGGGAATGGTTCT 1525
|||||||||||||||| ||| | |||||| || ||||||||||||||||||||| ||||
Sbjct 1318 ACGCACGTGTGGACAAAGGACA-GCAAGCA-CTCGCTGCTGGAGCTGCGGGAATGATTCT 1375
Query 1526 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1435
Query 1586 ACAAATTGACTACAAAGATGGTGAAACTTTGTTTTCTTACCTAAGTTCCACAAAAGATCC 1645
||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1436 TCAAATCGACTACAAAGAAGGTGAAGTTTTGTTTTCGTACCTAAGTTCCACAAAAGATCC 1495
Query 1646 CAAAGGTTACATCAAAGCACCTACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1705
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CAAAGGTTACATCAAAGCACCAACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1555
Query 1706 CTCTTTCTCTTCCAGAGGACCAAACACCATCACACCAGGG-ATCCTCAAGCCCGACATCA 1764
||||||||||||||||||||| ||| |||||||||| ||| |||||||| || |||||||
Sbjct 1556 CTCTTTCTCTTCCAGAGGACCTAACTCCATCACACC-GGGCATCCTCAAACCTGACATCA 1614
Query 1765 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACGGAAGCCACGGGCCCTACAGACTTAG 1824
|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1615 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACCGAAGCCACAAGCCCTACGGACTTAG 1674
Query 1825 ACTCTGACAATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCCTGTCCTC 1884
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1675 ACTCTGACCATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCTTGTCCTC 1734
Query 1885 ACATCTCCGGTGTCGTTGGTCTTTTGAAAACACTTCACCCTCATTGGAGTCCTGCAGCTA 1944
||||||| |||||||||||||| ||||| || |||||||| || ||||||||||| ||||
Sbjct 1735 ACATCTCAGGTGTCGTTGGTCTCTTGAAGACTCTTCACCCCCAATGGAGTCCTGCCGCTA 1794
Query 1945 TCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGACGTAAGCCCATGGTTG 2004
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct 1795 TCCGCTCAGCCATCATGACCACTTCAAGAACCAGAGACAACAGACGTAAGCCAATGGTTG 1854
Query 2005 ATGAATCCTTCAAGAAAGCAAATCCCTTCAGCTACGGTTCAGGCCATGTCCAACCCAATA 2064
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1855 ATGAATCATTCAAGAAAGCAAATCCCTTCAGCTACGGCTCAGGTCATGTCCAACCCAATA 1914
Query 2065 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACCACAGGAGACTACTTGGACTTCCTCT 2124
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1915 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACAATAGGAGACTACTTGGACTTCCTCT 1974
Query 2125 GCGCCGTTGGCTACAACAACACCGTGGTTCAACTCTTTGCCGAGGACCCACAGTACACGT 2184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1975 GCGCCGTTGGCTACAACAACACCGTAGTTCAACTCTTTGCCGAGGACCCACAGTACATGT 2034
Query 2185 GTCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GCCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2094
Query 2245 CGGGCTCTATCACCGTCACCCGAAAACTCAAAAACGTTGGACCACCTGCTACCTACAACG 2304
||| ||||||||||||||| || ||||||| |||||||||||| || |||||||||||||
Sbjct 2095 CGGACTCTATCACCGTCACTCGCAAACTCACAAACGTTGGACCGCCAGCTACCTACAACG 2154
Query 2305 CTCGTTTCCGAGAGCCACTTGGAGTTCGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2364
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2155 CTCACTTCCGAGAGCCACTTGGAGTTAGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2214
Query 2365 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCTTGCCAGTGACGCCTT 2424
|||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||
Sbjct 2215 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCAAGTCAGCGAAGCCTT 2274
Query 2425 CAGGCTACGTTTTTGGAGAGCTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2484
| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2275 CTGGCTACGTCTTCGGAGAGTTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2334
Query 2485 TCGTCGTCCAACTTT-----CAAGCTAGCCTCATTC 2515
|||||||| |||||| ||||||||||||||||
Sbjct 2335 TCGTCGTCGAACTTTAATTTCAAGCTAGCCTCATTC 2370
> Ahg922854 jgi|Araly1|922854|scaffold_104135.1
Length=238
Score = 246 bits (133), Expect = 5e-64
Identities = 157/168 (93%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1588 AAATTGACTACAAAGATGGTGAAAC-TTTGTTTTCTTACCTAAGTTCCACAAAAGATCCC 1646
||||||||||||||||||||||| | ||||||||| |||||||||||||| |||||||||
Sbjct 6 AAATTGACTACAAAGATGGTGAAGCTTTTGTTTTCGTACCTAAGTTCCACGAAAGATCCC 65
Query 1647 AAAGGTTACATCAAAGCACCTACCGCTACGC-TGAACACAAAGCCTGCTCCTTTCATGGC 1705
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 66 AAAGGTTACATCAAAGCACCAACCGCTAC-CTTGAACACAAAGCCTGCTCCTTTCATGGC 124
Query 1706 CTCTTTCTCTTCCAGAGGACCAAACACCATCACACCAGGGATCCTCAA 1753
||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 125 CTCTTTCTCTTCCAGAGGACCTAACTCCGTTACACCAGGGATCCTCAA 172
> Ahg922853 jgi|Araly1|922853|scaffold_104134.1
Length=1087
Score = 233 bits (126), Expect = 4e-60
Identities = 151/163 (93%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1095 GGAGATTACATGAGCGATGGTATAGC--CATTGGATCCTTCCACGCCGTCAAAAACGGGG 1152
|||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
Sbjct 760 GGAGATTACATGAGCGATGGCATTGCGGCATTGGATCCTTCCACGCCGTCAAAAACGGAG 819
Query 1153 TGACGGTTGTGTGCTCTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTG 1212
|||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||||
Sbjct 820 TGACGGTTGTGTGCTCTGCTGGGAATTCCGATCCTAAGTCTGGAACTGTCTCAAAGGTTG 879
Query 1213 CACCATGGGTTATTACAGTCGGTGCTAGCTCCATGGATCGGGA 1255
|||||||| |||||||||||||||||||||| |||||||||||
Sbjct 880 CACCATGGATTATTACAGTCGGTGCTAGCTCTATGGATCGGGA 922
> Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819
Length=195
Score = 100 bits (54), Expect = 4e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1929 TGGAGTCCTGCAGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGA 1988
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2 TGGAGTCCTGCTGCTATCCGCTCAGCCATCATGACAACTTCAAGAACCAGAGACAACAGA 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97549117445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5