BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59820.1

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950731 jgi|Araly1|950731|scaffold_802618.1                        819    0.0  


> Ahg950731 jgi|Araly1|950731|scaffold_802618.1
Length=540

 Score =  819 bits (443),  Expect = 0.0
 Identities = 508/538 (94%), Gaps = 9/538 (2%)
 Strand=Plus/Plus

Query  81   ATCATCATCATCAGAAGAAAAATGGTTGCGATATCGGAGATCAAGTCGACGGTGGATGTC  140
            ||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||| 
Sbjct  10   ATCATCATCAGAAGAAGAAAAATGGTTGCGAGATCGGAGATTAAGTCGACGGTGGATGTT  69

Query  141  ACGGCGGCGAATTGTTTGATGCTTTTATCTAGAGTTGGACAAGAAAACGTTGACGGTGGC  200
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  70   ACGGCGGCGAATTGTTTGATGCTTTTATCAAGAGTTGGACAAGAAAACGTTGACGGTGGA  129

Query  201  GATCAAAAACGCGTTTTCACATGTAAAACGTGTTTGAAGCAGTTTCATTCGTTCCAAGCC  260
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct  130  GATCAAAAACGCGTTTTCACATGTAAAACGTGTTTGAAGGAGTTTCATTCGTTTCAAGCC  189

Query  261  TTAGGAGGTCACCGTGCGAGTCACAAGAAGCCTAACAACGACGCTTTGTCGTCTGGATTG  320
            ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct  190  TTAGGAGGTCACCGTGCGAGTCACAAGAAGCCTAATAACGACACTTTGTCGTCTGGATTG  249

Query  321  ATGAAGAAGGTGAAAACGT-CGTCGCATCCTTGTCCCATATGTGGAGTGGAGTTTCCGAT  379
             |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct  250  GTGAAGAAGGTGAAAAC-TACGTCCCATCCTTGTCCCATATGTGGAGTGGAGTTTCCGAT  308

Query  380  GGGACAAGCTTTGGGAGGACACATGAGGAGACACAGGAACGAGAGTGGGGCT-GCTGGTG  438
            ||||||||||||||| |||||||||||||||||||| ||||| ||||||||| || || |
Sbjct  309  GGGACAAGCTTTGGGTGGACACATGAGGAGACACAGAAACGAAAGTGGGGCTGGC-GGCG  367

Query  439  GCGCGTTGGTTACACGCGCTTTGTTGCCGGAGCCCACGGTGACTACGTTGAAGAAATCTA  498
            |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct  368  GCGCGTTGGTTACACGCGCTTTGTTGCCGGAGCCGACAGTGACGACGTTGAAGAAATCTA  427

Query  499  GCAGTGGGAAGAGAGTGGCTTGTTTGGATCTGAGTCTAGGGATGGTGGACAATTTGAATC  558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  GCAGTGGGAAGAGAGTGGCTTGTTTGGATCTGAGTCTAGGGATGGTGGACAATTTGAATC  487

Query  559  TCAAGTTGGAGCTTGGAAGAACAGTTTattgattttatttattttccttaaattttct  616
            ||||||||||||||||||||||||||||||||||| |||| ||  | | |||||||||
Sbjct  488  TCAAGTTGGAGCTTGGAAGAACAGTTTATTGATTT-ATTT-TT--C-TAAAATTTTCT  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30155227347


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5