BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59830.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332253 jgi|Araly1|332253|fgenesh1_pm.C_scaffold_8001596 1984 0.0
> Ahg332253 jgi|Araly1|332253|fgenesh1_pm.C_scaffold_8001596
Length=1248
Score = 1984 bits (1074), Expect = 0.0
Identities = 1192/1250 (95%), Gaps = 4/1250 (0%)
Strand=Plus/Plus
Query 223 ATGAAGAATAATGAGCATACAAGTGAGGAAGATTCAGTGTATGATCATTCAACAAGAGAT 282
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGAACAATGAGCATACAAGTGAGGATGATTCAGTGTATGATCAGTCAACAAGAGAT 60
Query 283 GATTCAAAGCGTCCTCATCCTTGGTTTGTTGATTCTTCTCGTTCAGAGATGTTCCCAAAC 342
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 61 GATTCAAAGCGTCCTCATCCTTGGTTTGTTGATTCTTCTCGCTCTGAGATGTTCCCAAAC 120
Query 343 AAGAAACAAGCTGTGCAAGATCCTGTTGTAGGATTAGGAAAATCAAATGTTGGTCTTCCT 402
||||||||||||||||||||| | || | ||||||||||||||||||||| ||||||||
Sbjct 121 AAGAAACAAGCTGTGCAAGATTCAGTAGGAGGATTAGGAAAATCAAATGTAGGTCTTCCC 180
Query 403 TTGTGGGAAAGCTCATCGGTTTTTCAGTCTGTTTCTAACCAGTTTATGGATCGGCTTCTA 462
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 181 TTGTGGGAAAGCTCATCAGTTTTTCAATCTGTTTCTAACCAGTTCATGGATCGGCTTCTT 240
Query 463 GGAGCTGAAATGCCTCCAAGACCTCTTTTGTTTGGTGATAGAGATAGAACGGAAGGTTGT 522
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGCTGAAATGCCGCCCAGACCCCTTTTGTTTGGTGATAGAGATAGAACGGAAGGTTGT 300
Query 523 AGCCACCACCACCAGAATAAGAGTATAGCTGAGAGTTATATGGAAGATACATCTGTTGAA 582
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCCACCACCACCAGACTAAGAGTATAGCTGAGAGTTATATGGAAGATACATCTGTTGAA 360
Query 583 TTGTCGATATCTAATGGCGTGGAGGTTGCTGGGGGTTGTTTTGGTGGTGATGGAAATAGA 642
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 361 TTGTCGATATCTAATGGCGTGGAGGTTGCTGGGAGTTCTTTTGGTGGTGATGGAATTAGA 420
Query 643 AAACTTCCGGTTAGTCGGGTTAAGGAAACGATGAGTACACATGTTGCTTTAGA-AGGTCA 701
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 421 AAACTTCCCGTTAGTCGGGTTAAGGAAACTATGAGTACACATGTTGCTTTAGACA-GTCA 479
Query 702 TAGTCAAAGGAAAATCGAGTCGTCTTCGATACAAGCTTGTAGCCGGGAAAACGAAAGTAG 761
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TAATCAAAGGAAAATCGAGTCATCTTCTATACAAGCTTGTAGCCGGGAAAACGAAAGTAG 539
Query 762 CTATATAAATTTTGCACTAGCGGGTCATCCCTATGGCAATGAGGACTCTCAGGGGATCAC 821
|| ||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct 540 CTTTATAAATTTTGCACTGGCAGGTCATCCTTATGGCAATGAGGACTCTCATGGGATCAC 599
Query 822 ATTTGGTGAAATAAACGATGAACATGGTGTTGGCTCTACTTCCAATGTGGTTGGAAACTA 881
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 ATTTGGTGAAATAAACGATGAACATGGTGTTGGCTCCACTTCCAATGTGGTTGGAAACTA 659
Query 882 TCAATCATATGTTCAAGACCCAATTGGAACATTGGATATTGTTTATGACCAAGAAACTGG 941
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TCAATCATATGTTCAAGACCCAATTGGAACATTGGATATTGTTTATGGCCAAGAAACTGA 719
Query 942 GAGTTCACAAACCAGCAGCGGAGTTGTAAGCGAACAACAAGTTGCTAAACCGAGTTTAGG 1001
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GAGTTCACAGACCAGCAGCGGAGTTGTAAGCGAACAACAAGTTGCTAAACCGAGTTT-GG 778
Query 1002 -ATCACTTCCAAAGACCAAAGCAGAGGCCAAGTCATCAAAGAAGGAAGCTTCCACAAGCT 1060
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACCAGTTCCAAAGAACAAAGCAGAGGCCAAGTCATCAAAGAAGGAAGCTTCCACAAGCT 838
Query 1061 TTCCTTCAAACGTCAGAAGCTTAATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGT 1120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 839 TTCCTTCAAACGTCAGAAGCTTAATATCAACCGGTATGCTCGATGGCGTTCCTGTGACGT 898
Query 1121 ATGTTTCTGTCTCACGTGAGGAGCTTCGAGGAGTCATCAAAGGATCGGGTTATCTCTGCG 1180
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 ATGTTTCTATCTCACGTGAGGAGCTTCGAGGAGTCATCAAAGGATCAGGTTATCTCTGCG 958
Query 1181 GATGTCAAACTTGCGATTTCACAAAGGTGCTTAACGCGTATGCATTCGAGAGGCACGCTG 1240
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 GATGTCAAACTTGTGAATTCACAAAGGTGCTTAACGCGTATGCATTCGAGAGACACGCTG 1018
Query 1241 GATGTAAAACAAAGCATCCAAACAATCATATTTACTTTGAAAACGGGAAGACGATTTATC 1300
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1019 GATGTAAAACAAAGCATCCAAACAATCATATTTACTTTGAAAATGGGAAGACCATTTATC 1078
Query 1301 AGATAGTTCAGGAACTGAGGAACACTCCAGAGAGCATACTGTTTGATGTGATTCAGACTG 1360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 AGATAGTTCAGGAACTGAGGAACACTCCAGAGAGTATACTGTTTGATGTGATTCAGACTG 1138
Query 1361 TATTTGGTTCTCCTATCAACCAGAAAGCATTTCGCATATGGAAAGAATCATTCCAAGCGG 1420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1139 TATTTGGTTCTCCTATCAACCAGAAAGCATTTCGCATCTGGAAAGAATCATTCCAAGCTG 1198
Query 1421 CGACTAGAGAACTTCAGCGGATCTATGGCAAAGAAGAGCGTTCCTTCTGA 1470
||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1199 CGACTAGGGAACTTCAGCGGATCTATGGCAAAGAAGAGCGCTCCTTTTGA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5