BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59840.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 1471 0.0
Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1 815 0.0
> Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1
Length=924
Score = 1471 bits (796), Expect = 0.0
Identities = 878/916 (96%), Gaps = 12/916 (1%)
Strand=Plus/Plus
Query 2 TTTCTTCTCTGCTCATTTACTATAACCAACAAGGtctcttctcttctcttctcctctctG 61
|||||||||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct 1 TTTCTTCTCTGCTCATTTACTATAACCAACAAGG-----TCTC-T-TC-TCT--TCTCTG 50
Query 62 CATCATTTTGATCCGATTCGATGGCTGCTCCACCTGCTAGAGCTAGAGCCGATTATGATT 121
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 51 CATCATTTTGATCCGATTCAATGGCTGCTCCACCTGCTAGGGCTAGAGCTGATTACGATT 110
Query 122 ATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTTGGTAAAAGTTGTTTGCTTCTAA 181
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 111 ATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGTTTGCTTTTAA 170
Query 182 GGTTCTCTGATGGCTCTTTCACCACTAGCTTCATCACTACCATTGGTATTGATTTTAAGA 241
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 GGTTCTCTGATGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATTTTAAGA 230
Query 242 TAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTTCAGATTTGGGACACTGCTGGTC 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 231 TAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTC 290
Query 302 AAGAACGTTTTCGAACCATCACCACTGCTTATTACCGCGGGGCAATGGGGATTTTACTGG 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 291 AAGAACGTTTTCGAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATTTTACTGG 350
Query 362 TGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGAAACTGGATTCGTAATATTG 421
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 351 TGTATGATGTCACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTCGTAATATCG 410
Query 422 AACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGAAACAAAGCTGATATGGACG 481
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 411 AACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGACATGGACG 470
Query 482 AGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCACTTGCTGACGAATATGGAATCA 541
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 471 AGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCTCTTGCTGATGAATATGGAATCA 530
Query 542 AGTTCTTTGAAACAAGTGCCAAAACTAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAG 601
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 AGTTCTTCGAAACAAGTGCCAAAACAAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAG 590
Query 602 CAAAGGACATAAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CAAAGGACATAAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCA 650
Query 662 AGATCAGCCAAACAGACCAGGCTGCTGGAGCCGGACAGGCCACACAGAAGTCTGCATGCT 721
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 651 AGATCAGCCAAACAGACCAGGCGGCTGGAGCCGGTCAGGCCACACAGAAGTCTGCATGCT 710
Query 722 GTGGAAGTTAATCAGTCCCAAAAGGCTCCAAAGTTGAAGTGAAGTGAAAAACAGATTTAT 781
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 711 GTGGAAGTTAATCAGTCCCAAAAGGCTCTAAAGTTGAAGTGAAGTGAAAA-CAGATTTAT 769
Query 782 CTTGGGGTGCTTTTGTAtttttttttCTTTTGATTATTTGTTCTTATTTGACTTCTTCTA 841
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 770 CTTGGGGCGCTTTTGTATTTTTTTCTCTTTTGATTATTTGTTCTTATTTGACTTCTTCTA 829
Query 842 GTTTGTTCATGAGGGTAATAGAATCTTTTAAGAAATTTTTCCTTCTCAGACAGATTCGAT 901
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 830 GTTTGTTCATGAGGGTAATAGAATCTTT-AAGAAATTGTTCGTTCTCAGACAGATTCGAT 888
Query 902 GTCACAGAAGCTGAAT 917
|||||||||||||||
Sbjct 889 ATCACAGAAGCTGAAT 904
> Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1
Length=1102
Score = 815 bits (441), Expect = 0.0
Identities = 588/661 (89%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 73 TCCGATTCGATGGCTGCTCCACCTGCTAGAGCTAGAGCCGATTATGATTATCTCATTAAG 132
|||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||
Sbjct 199 TCCGATTCAATGGCTGCTCCTCCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAG 258
Query 133 CTTCTTCTCATCGGTGATAGCGGTGTTGGTAAAAGTTGT-TTGCTTCTAAGGTTCTCTGA 191
|||||| | || || |||||||||||||||||||||||| || |||||| | ||||||||
Sbjct 259 CTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTT-CTTCTACGTTTCTCTGA 317
Query 192 TGGCTCTTTCACCACTAGCTTCATCACTACCATTGGTATTGATTTTAAGATAAGAACTAT 251
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 318 TGGATCTTTCACCACTAGCTTCATTACCACCATTGGTATTGACTTTAAGATAAGAACGAT 377
Query 252 TGAGCTTGATGGCAAACGTATCAAGCTTCAGATTTGGGACACTGCTGGTCAAGAACGTTT 311
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 378 TGAGCTTGATGGTAAACGTATCAAGCTTCAGATTTGGGATACTGCTGGTCAAGAGCGGTT 437
Query 312 TCGAACCATCACCACTGCTTATTACCGCGGGGCAATGGGGATTTTACTGGTGTATGATGT 371
||| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 438 TCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGT 497
Query 372 CACAGACGAGTCATCCTTCAACAACATTAGAAACTGGATTCGTAATATTGAACAGCACGC 431
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 498 CACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAACATCGAACAGCATGC 557
Query 432 TTCAGATAATGTCAACAAAATCTTGGTAGGAAACAAAGCTGATATGGACGAGAGCAAGAG 491
|||||||||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 558 TTCAGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAG 617
Query 492 GGCTGTGCCAAAATCAAAGGGTCAAGCACTTGCTGACGAATATGGAATCAAGTTCTTTGA 551
||| || || | | ||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct 618 GGCGGTACCTACAGCAAAGGGTCAAGCTCTTGCTGATGAGTACGGAATTAAGTTCTTTGA 677
Query 552 AACAAGTGCCAAAACTAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACAT 611
|||||||||||| || || || || |||||||||||||||||||| |||| | ||||||
Sbjct 678 AACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACAT 737
Query 612 AAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCA 671
|||||||| || | || || ||||| || |||||||||||||| |||||||| |||||
Sbjct 738 TAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACTATCAAGATAAGCCA 797
Query 672 AACAGACCAGGCTGCTGGAGCCGGACAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTA 731
||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 798 AACGGACCAGGCAGCTGGAGCCGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTA 857
Query 732 A 732
|
Sbjct 858 A 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5