BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59845.1
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496121 jgi|Araly1|496121|fgenesh2_kg.8__1937__AT5G59845.1 773 0.0
> Ahg496121 jgi|Araly1|496121|fgenesh2_kg.8__1937__AT5G59845.1
Length=611
Score = 773 bits (418), Expect = 0.0
Identities = 554/616 (90%), Gaps = 23/616 (4%)
Strand=Plus/Plus
Query 2 TCCCAAACCATCACTCCTTTTGCATTGTGT-GAAACCTTCGAGTTTTCTCTTCATCTTCT 60
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1 TCCCAAACCATCACTCCTTTTGCATTGTGTGGAAA-CTTCGAGTTTTTTCTTCATCTTCT 59
Query 61 CAAAGTAACAAACTTTCTCCAAACAGATTATTATTAA-AA-C-AATCTCATCAAGAACTA 117
|||||||||||||||| |||||||||||||||| || || | |||||||||||||||||
Sbjct 60 CAAAGTAACAAACTTTGTCCAAACAGATTATTAAAAACAACCAAATCTCATCAAGAACTA 119
Query 118 CGATGAAATTCCCGGCTGTAAAAGTTCTTATTATCTCTCTTCTCATCACATCTTCTTTGT 177
|||||| |||| || |||| || || ||||||||||||||||| |||||||||||||||
Sbjct 120 AGATGAAGTTCCAGGTTGTACAATTTATTATTATCTCTCTTCTCCTCACATCTTCTTTGT 179
Query 178 TCATACTCTCAACCGCGGATTCGTCACCATGCGGAGGAAAATGCAACGTGAGATGTTCAA 237
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TCATGCTCTCAACCGCCGATTCGTCACCATGCGGCGGAAAATGCAACGTGAGATGTTCAA 239
Query 238 AGGCAGGAAGACAAGATAGGTGTCTCAAGTATTGTAATATATGTTGCGAGAAGTGTAACT 297
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 240 AGGCAGGAAGACAAGATCGGTGTCTCAAGTATTGCAATATATGTTGCGAGAAGTGTAATT 299
Query 298 ATTGTGTTCCTTCAGGCACTTATGGAAACAAAGATGAATGCCCTTGTTACCGCGATATGA 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 ATTGTGTTCCTTCAGGCACTTATGGAAACAAAGATGAGTGCCCTTGTTACCGCGATATGA 359
Query 358 AGAACTCCAAAGGCACGTCCAAATGTCCTTGATCATGTTCTTAAGATTATCCTTATAGAC 417
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 360 AGAACTCCAAAGGCACATCCAAATGTCCTTGAACATGTTCTGAAGATTATCCTTATAGAC 419
Query 418 ACAATATC----TT--------GAAATGTTAAGATTGTGCTTGATGCCTAAAATAATGAG 465
|||||||| || ||||||||||||||||||||| ||| ||||||||| ||
Sbjct 420 ACAATATCCACATTTATATCTAGAAATGTTAAGATTGTGCTTGCTGCATAAAATAATTAG 479
Query 466 CTTGAGATACTTCT-ATGAATGAATATGTGAAAGATTTT-GACAATAAAATGATTTGATG 523
|||||||||||| | || ||||||||||||||||| | |||||||||||||||| |||
Sbjct 480 CTTGAGATACTTTTTATCTATGAATATGTGAAAGATCGTAGACAATAAAATGATTT-ATG 538
Query 524 TATTAAAATATTCTTAGTGAAGTTATATATGTATAAATGAAGTATGAAATATACATTGTA 583
|||||||||||| | ||||| ||||||||| | || ||||||| |||||||||||
Sbjct 539 TATTAAAATATTATGAGTGACGTTATATATACGTG--TGT-GTATGAATTATACATTGTA 595
Query 584 TGTTGCTTTACATGAG 599
||||||||||||||||
Sbjct 596 TGTTGCTTTACATGAG 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22015774853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5