BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59850.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332256 jgi|Araly1|332256|fgenesh1_pm.C_scaffold_8001599 660 0.0
Ahg323263 jgi|Araly1|323263|fgenesh1_pm.C_scaffold_5000807 521 2e-147
> Ahg332256 jgi|Araly1|332256|fgenesh1_pm.C_scaffold_8001599
Length=393
Score = 660 bits (357), Expect = 0.0
Identities = 381/393 (97%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 112 ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 171
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGAATCAGTGTGCTTAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
Query 172 GGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTC 231
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 GGGAAGAGGCAAGTCATGATCAGGCCATCTTCTAAAGTGATCATCAAGTTTCTTATCGTC 120
Query 232 ATGCAGAAACACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAG 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATGCAGAAACACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGTAAG 180
Query 292 ATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGAT 351
|| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 181 ATTGTGGTTGAGCTCAATGGAAGACTAAACAAATGTGGAGTCATCAGTCCTCGTTTTGAT 240
Query 352 GTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGGG 411
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 GTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCTAGACAGTTTGGA 300
Query 412 TACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAAT 471
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACATTGTTCTTACGACTTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAAT 360
Query 472 GTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 504
|||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 393
> Ahg323263 jgi|Araly1|323263|fgenesh1_pm.C_scaffold_5000807
Length=393
Score = 521 bits (282), Expect = 2e-147
Identities = 357/394 (91%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 112 ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 171
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
Query 172 GGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTC 231
|| |||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120
Query 232 ATGCAGAAA-CACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAA 290
||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 121 ATGCA-AAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAA 179
Query 291 GATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGA 350
||| || || |||||||||||||| || ||||| ||||| || |||||||||||||||||
Sbjct 180 GATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGA 239
Query 351 TGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGG 410
||| || ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 240 TGTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGG 299
Query 411 GTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAA 470
||||||||||| |||||||| || || || ||||| |||||||||||||||||||||||
Sbjct 300 TTACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAA 359
Query 471 TGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 504
|||||||||||| |||||||| ||||||||||||
Sbjct 360 TGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5