BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G59860.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917732 jgi|Araly1|917732|Al_scaffold_0008_2483                    300    7e-81
  Ahg333237 jgi|Araly1|333237|fgenesh1_pm.C_scaffold_215000001         213    9e-55


> Ahg917732 jgi|Araly1|917732|Al_scaffold_0008_2483
Length=288

 Score =  300 bits (162),  Expect = 7e-81
 Identities = 224/251 (89%), Gaps = 16/251 (6%)
 Strand=Plus/Plus

Query  230  GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCC------T----  279
            |||||||||||||||||||||||||||||||||||||||||||||||||      |    
Sbjct  38   GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTGGTCAGA  97

Query  280  TT-T----GCTCGTCTTATTAAGGACCAGCAAACGCAGAGACCTAAAGGTTTCGGATTCA  334
            || |    ||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct  98   TTATAGAAGCTCGTCTTATTAGGGACCAGCAAACACAAAGACCTAAAGGTTTCGGATTCA  157

Query  335  TAACTTTTGAGTCTGAGGATGATGCACAAAAGGCTTTGAAAGCTTTGAATGGGAAGATTG  394
            | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  158  TTACTTTCGAGTCTGAGGATGATGCACAAAACGCTTTGAAAGCTTTGAATGGGAAGATTG  217

Query  395  TTAATGGCAGACTAATATTTGTGGAAACTGCAAAGGAAGTAGAAGCACCAACAACAAGTC  454
            ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| | 
Sbjct  218  TTAATGGCAGATTAATATTTGTGGAAGCTGCAAAGGAAGTAGAAGCACCAATAACAATTA  277

Query  455  TGAAAA-GTAA  464
            |||||| ||||
Sbjct  278  TGAAAAAGTAA  288


> Ahg333237 jgi|Araly1|333237|fgenesh1_pm.C_scaffold_215000001
Length=249

 Score =  213 bits (115),  Expect = 9e-55
 Identities = 136/146 (93%), Gaps = 1/146 (1%)
 Strand=Plus/Plus

Query  320  AAGGTTTCGGATTCATAACTTTTGAGTCTGAGGATGATGCACAAAAGGCTTTGAAAGCTT  379
            |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  104  AAGGTTTCGGATTCATTACTTTCGAGTCTGAGGATGATGCACAAAACGCTTTGAAAGCTT  163

Query  380  TGAATGGGAAGATTGTTAATGGCAGACTAATATTTGTGGAAACTGCAAAGGAAGTAGAAG  439
            ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct  164  TGAATGGGAAGATTGTTAAGGGCAGATTAATATTTGTGGAAGCTGCAAAGGAAGTAGAAG  223

Query  440  CACCAACAACAAGTCTGAAAA-GTAA  464
            |||||| ||||| | |||||| ||||
Sbjct  224  CACCAATAACAATTATGAAAAAGTAA  249


 Score =  100 bits (54),  Expect = 8e-21
 Identities = 54/54 (100%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  230  GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTG  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38   GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTG  91



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5