BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59870.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358204 jgi|Araly1|358204|fgenesh1_pg.C_scaffold_8001991 640 0.0
Ahg358205 jgi|Araly1|358205|fgenesh1_pg.C_scaffold_8001992 553 8e-157
> Ahg358204 jgi|Araly1|358204|fgenesh1_pg.C_scaffold_8001991
Length=450
Score = 640 bits (346), Expect = 0.0
Identities = 419/454 (92%), Gaps = 5/454 (1%)
Strand=Plus/Plus
Query 77 ATGGAATCCACCGGAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAACCACCTGGTGCCCCA 136
|||||| |||||| ||||||||||||||||||||||||||||||| | || |||| | ||
Sbjct 1 ATGGAAACCACCGCAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAA-C-CC-GGTGGCGCA 57
Query 137 AAAACCAAATCGGTTTCGAAATCGATGAAAGCCGGTCTTCAATTCCCAGTGGGAAGAATC 196
| ||||||||||||||||||||| || ||||||||||||||||| || || || ||||||
Sbjct 58 AGAACCAAATCGGTTTCGAAATCAATCAAAGCCGGTCTTCAATTTCCGGTTGGTAGAATC 117
Query 197 ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC 177
Query 257 ATGGCCGCCGTTCTTGAATACCTCGCCGCAGAAGTTCTGGAGCTTGCTGGTAACGCTGCG 316
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 ATGGCCGCCGTGCTTGAATACCTCGCCGCTGAAGTTCTGGAGCTTGCTGGTAACGCTGCG 237
Query 317 AGAGATAACAAGAAATCAAGGATAATTCCGAGGCATCTTCTTCTCGCGATAAGGAACGAT 376
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 238 AGAGATAACAAGAAGTCAAGGATCATTCCGAGGCATCTTCTTCTTGCGATAAGGAACGAT 297
Query 377 GAAGAATTGGGGAAACTTCTGAGTGGTGTCACAATCGCTCACGGTGGTGTTTTGCCTAAC 436
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 298 GAAGAATTGGGGAAGCTTCTAAGTGGAGTCACAATCGCTCACGGTGGTGTATTGCCTAAC 357
Query 437 ATCAACTCTGTTCTAT-TGCCTAAGAAGTCTGCCACTAAACCAGCTGAAGAAAAGGCTAC 495
|| || |||||||| | | ||||||||| |||| |||||| || | ||||||||||| ||
Sbjct 358 ATTAATTCTGTTCT-TCTACCTAAGAAGACTGCAACTAAATCAACCGAAGAAAAGGCGAC 416
Query 496 CAAATCACCAGTCAAGTCTCCAAAGAAAGCTTAA 529
|||||| |||||||||||||||||||||||||||
Sbjct 417 CAAATCTCCAGTCAAGTCTCCAAAGAAAGCTTAA 450
> Ahg358205 jgi|Araly1|358205|fgenesh1_pg.C_scaffold_8001992
Length=450
Score = 553 bits (299), Expect = 8e-157
Identities = 404/454 (89%), Gaps = 9/454 (2%)
Strand=Plus/Plus
Query 77 ATGGAATCCACCGGAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAACCACCTGGTGCCCCA 136
|||||| |||||| |||||| |||||||||||||| ||||||||| | || |||| |||
Sbjct 1 ATGGAAACCACCGCAAAAGTAAAGAAAGCTTTCGGGGGAAGAAAA-C-CC-GGTGGTCCA 57
Query 137 AAAACCAAATCGGTTTCGAAATCGATGAAAGCCGGTCTTCAATTCCCAGTGGGAAGAATC 196
| ||||||||||||||||||||| || ||||||||||| |||||||| || || ||||||
Sbjct 58 AGAACCAAATCGGTTTCGAAATCAATCAAAGCCGGTCTCCAATTCCCGGTTGGTAGAATC 117
Query 197 ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC 256
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 118 ACTCGTTTCCTGAAGAAAGGACGGTACGCTCAAAGACTCGGTGGTGGTGCTCCGGTTTAC 177
Query 257 ATGGCCGCCGTTCTTGAATACCTCGCCGCAGAAGTTCTGGAGCTTGCTGGTAACGCTGCG 316
|||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 178 ATGGCCGCTGTTCTCGAATACCTCGCCGCCGAAGTTCTGGAGCTAGCTGGTAACGCTGCG 237
Query 317 AGAGATAACAAGAA-ATCAAGGATAATTCCGAGGCATCTTCTTCTCGCGATAAGGAACGA 375
||||| |||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 AGAGACAACAAGAAGA-CTAGGATAATTCCGAGGCATCTTCTTCTTGCGATAAGGAACGA 296
Query 376 TGAAGAATTGGGGAAA-CTTCTGAGTGGTGTCACAATCGCTCACGGTGGTGTTTTGCCTA 434
|||||||||||| ||| ||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct 297 TGAAGAATTGGG-AAAGCTTCTCAGTGGAGTCACAATTGCTCATGGTGGTGTTTTGCCTA 355
Query 435 ACATCAACTCTGTTCTATTGCCTAAGAAGTCTGCCACTAAACCAGCTGAAGAAAAGGCTA 494
| || ||||||||||| |||||||||||| |||| | ||| || | ||||||||||||
Sbjct 356 ATATAAACTCTGTTCTTTTGCCTAAGAAGACTGCTTCAAAATCAACCGAAGAAAAGGCTG 415
Query 495 CCAAATCACCAGTCAAG-TCTCCAAAGAAAGCTT 527
||||||||||| ||| ||||| ||||||||||
Sbjct 416 GCAAATCACCAG-CAAAATCTCCCAAGAAAGCTT 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5