BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59880.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496124 jgi|Araly1|496124|fgenesh2_kg.8__1940__AT5G59880.1 1199 0.0
Ahg332260 jgi|Araly1|332260|fgenesh1_pm.C_scaffold_8001603 403 9e-112
> Ahg496124 jgi|Araly1|496124|fgenesh2_kg.8__1940__AT5G59880.1
Length=828
Score = 1199 bits (649), Expect = 0.0
Identities = 775/834 (93%), Gaps = 16/834 (2%)
Strand=Plus/Plus
Query 1 ATGTTTACTTATTCGGACTAGAGAGCTTCCGCATAAAGCTGAGGaaaaaaaaGAGAGAAG 60
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTTTGCTTATTCGGACTAGAGAGC-TCCGCATAAAGCTGAGGAAAAGAAAGAGAGAAG 59
Query 61 ACGCACACCGAAGAAAACACACAAGACTCCATTATTCTCCTG---CTTCTTCGTCTCTTC 117
||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||
Sbjct 60 ACGCACACCGAAGAAAA-ACACAAGACTTCTTTATTCTCCTGCTTCTTCTTCGTCTCTTC 118
Query 118 AATTATTTTCTCTGAGACTAGCTTTGATTCAACCATGGCTAATGCAGCATCAGGAATGGC 177
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 AATAATTTTCTCTGAGACTAGCTTTGATTCAGCCATGGCTAATGCAGCATCAGGAATGGC 178
Query 178 AGTCCATGATGACTGCAAGCTGAAATTTATGGAATTGAAGACGAAAAGGACACACCGTTT 237
||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 179 AGTCCATGATGACTGCAAGCTGAAATTTATGGAGCTGAAGACGAAAAGGACATATCGTTT 238
Query 238 CATCATTTACAAGATTGAGGAGCTGCAGAAACAAGTGATTGTTGAGAAAATCGGTGAACC 297
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 239 CATCGTTTACAAGATTGAGGAGCAGCAGAAACAAGTGGTTGTTGAGAAAATCGGTGAACC 298
Query 298 GGGTCAAACCCATGAGGACCTTGCTGCAAGTCTTCCAGCTGATGAATGCCGCTATGCCAT 357
| | | |||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 299 TGCTGACACCCATGAGGCCCTTGCTGCATGTCTTCCAGCTGATGAATGTCGCTATGCCGT 358
Query 358 TTTCGATTTTGATTTTGTCAGTTCTGAGGGTGTCCCAAGGAGCAGGAtttt-tttCGTGG 416
|||||||||||||||| ||| | | |||| |||||||| |||||||||||| ||| || |
Sbjct 359 TTTCGATTTTGATTTTCTCACTGCAGAGGATGTCCCAAAGAGCAGGATTTTCTTT-GTAG 417
Query 417 CATGGTCTCCGGACACAGCAAGAGTGAGAAGCAAGATGATCTATGCGAGCTCCAAGGACA 476
||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 418 CATGGTCTCCGGACACAGCAAAAGTGAGAAGCAAAATGATCTATGCGAGCTCTAAGGACA 477
Query 477 GGTTCAAGAGAGAACTAGACGGAATTCAGGTCGAGCTTCAGGCAACCGATCCAACCGAGA 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 GGTTCAAGAGAGAACTAGACGGAATTCAGATCGAGCTTCAGGCAACCGATCCAACCGAGA 537
Query 537 TGGATCTTGATGTTTTCAAAAGCCGAGCCAATTGATGAAAGAAATCCCCTGAAAATTTCG 596
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 538 TGGATCTTGATGTTTTCAAAAGCCGAGCCACTTGATGAA-GAATTCCCCTGAAAATTTCG 596
Query 597 GTTGAATCAAACTTTTT-CGTACTATT-ACTCAGTGATGCTTTTTCCTAAAGTTTGCTGT 654
||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||||
Sbjct 597 GTTGAATCAAACTTTTTTCGTACTATTTACTCAGTGATGCTTTTTCTTGAAGTTTGCTGT 656
Query 655 GACGGTACCAACCTGAACAGCTTCATTTTATCAGTTTGGTCTTTG-TCTTTGTCTTTGGT 713
|||||||||||||| |||||||||||||||| | | |||||||| |||||||||| |||
Sbjct 657 GACGGTACCAACCTAAACAGCTTCATTTTATTA-TC-GGTCTTTGGTCTTTGTCTTCGGT 714
Query 714 CTCCTTTTTGG-GTCCTTATAGTGTTGTCTTAAAACTTAAGGAATCTGGCTTGTGCTCTT 772
||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTCTTTTTTTGTGTCCTTATACTGTTGTCTTAAAACTTAAGGAATCTGGCTTGTGCTCTT 774
Query 773 T-ACCATTGTGGAAGAAA-TCGAACCCTTTATTAAACAAGAATCCTATTGGCAC 824
| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 TTACCATTGTGGAAGAAACTCGAACCCTTTATTAAACAAGAATCCTATTGGCAC 828
> Ahg332260 jgi|Araly1|332260|fgenesh1_pm.C_scaffold_8001603
Length=399
Score = 403 bits (218), Expect = 9e-112
Identities = 336/393 (85%), Gaps = 8/393 (2%)
Strand=Plus/Plus
Query 173 ATGGCAGTCCATGATGACTGCAAGCTGAAATTTATGGAA-TTGAAGACGAAAAGGACACA 231
||||| |||||||||||||||||||||| |||| ||||| || ||| |||||||||||||
Sbjct 1 ATGGCGGTCCATGATGACTGCAAGCTGAGATTTCTGGAACTT-AAGGCGAAAAGGACACA 59
Query 232 CCGTTTCATCATTTACAAGATTGAGGAGCTGCAGAAACAAGTGATTGTTGAGAAAATCGG 291
||||||||| | |||||||| |||||| |||||| |||||||||||||||||| | ||
Sbjct 60 CCGTTTCATTGTCTACAAGATCGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGG 119
Query 292 TGAACCGGGTCAAACCCATGAGGACCTTGCTGCAAGTCTTCCAGCTGATGAATGCCGCTA 351
|||||| || ||| | |||||| |||| ||||||||||||||||| |||||||| ||
Sbjct 120 TGAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGAGGAATGCCGATA 179
Query 352 TGCCATTT-TCGATTTTGATTTTGTCAGTTCTGAGGGTGTCCCA-AGGAGCAGGAttttt 409
||||||| | ||||| || ||||||| | | ||| | | ||| | ||||| ||||||
Sbjct 180 CGCCATTTAT-GATTTCGACTTTGTCACTGCGGAGAAT-TGCCAGAAGAGCAAGATTTTC 237
Query 410 ttCGTGGCATGGTCTCCGGACACAGC-AAGAGTGAGAAGCAAGATGATCTATGCGAGCTC 468
||| | ||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 238 TTCATTGCATGGTGTCCGGACGTAGCAAAG-GTGAGAAGCAAGATGATCTATGCGAGCTC 296
Query 469 CAAGGACAGGTTCAAGAGAGAACTAGACGGAATTCAGGTCGAGCTTCAGGCAACCGATCC 528
|||||||||||||||| | ||||| || |||||||| || ||||||||||||||||||||
Sbjct 297 CAAGGACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAGGCAACCGATCC 356
Query 529 AACCGAGATGGATCTTGATGTTTTCAAAAGCCG 561
||| |||||||||||||||||||| ||||||||
Sbjct 357 AACTGAGATGGATCTTGATGTTTTGAAAAGCCG 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5