BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59890.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332260 jgi|Araly1|332260|fgenesh1_pm.C_scaffold_8001603 682 0.0
Ahg496124 jgi|Araly1|496124|fgenesh2_kg.8__1940__AT5G59880.1 436 1e-121
Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1 207 8e-53
> Ahg332260 jgi|Araly1|332260|fgenesh1_pm.C_scaffold_8001603
Length=399
Score = 682 bits (369), Expect = 0.0
Identities = 389/399 (97%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 155 ATGGCAGTCCATGATGACTGCAAGCTAAGATTTCTGGAACTGAAGGCGAAAAGGACACAC 214
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGTCCATGATGACTGCAAGCTGAGATTTCTGGAACTTAAGGCGAAAAGGACACAC 60
Query 215 CGTTTCATTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGT 274
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTTTCATTGTCTACAAGATCGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGT 120
Query 275 GAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGACGAATGCCGATAC 334
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGAGGAATGCCGATAC 180
Query 335 GCCATTTATGATTTCGACTTTGTCACTGCAGAGAATTGCCAGAAGAGCAAGATTTTCTTC 394
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GCCATTTATGATTTCGACTTTGTCACTGCGGAGAATTGCCAGAAGAGCAAGATTTTCTTC 240
Query 395 ATTGCATGGTGTCCCGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCTAAG 454
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTGCATGGTGTCCGGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCCAAG 300
Query 455 GACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAAGCAACTGATCCAACT 514
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 GACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAGGCAACCGATCCAACT 360
Query 515 GAGATGGATCTTGATGTTTTGAAAAGCCGCGTCAACTAA 553
|||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGATGGATCTTGATGTTTTGAAAAGCCGCGTCAACTAA 399
> Ahg496124 jgi|Araly1|496124|fgenesh2_kg.8__1940__AT5G59880.1
Length=828
Score = 436 bits (236), Expect = 1e-121
Identities = 378/446 (85%), Gaps = 11/446 (2%)
Strand=Plus/Plus
Query 104 AATTGTCTCTGACAC-CGTTTTGATTCAGCCATGGCTAATGCTGCGTCAGGAATGGCAGT 162
|||| ||||||| || | ||||||||||||||||||||||| || ||||||||||||||
Sbjct 122 AATTTTCTCTGAGACTAGCTTTGATTCAGCCATGGCTAATGCAGCATCAGGAATGGCAGT 181
Query 163 CCATGATGACTGCAAGCT-AAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTTTCA 221
|||||||||||||||||| || |||| |||| |||||| ||||||||||| | |||||||
Sbjct 182 CCATGATGACTGCAAGCTGAA-ATTTATGGAGCTGAAGACGAAAAGGACATATCGTTTCA 240
Query 222 TTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGTGAACCTA 281
| || ||||||||||||||| ||||||| |||||| ||||||||||| | |||||||||
Sbjct 241 TCGTTTACAAGATTGAGGAGCAGCAGAAACAAGTGGTTGTTGAGAAAATCGGTGAACCTG 300
Query 282 TTCTA-ACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGACGAATGCCGATACGCCATT 340
| | || | |||| | |||| ||| ||||||||||||| ||||| || || ||| ||
Sbjct 301 CTG-ACACCCATGAGGCCCTTGCTGCATGTCTTCCAGCTGATGAATGTCGCTATGCCGTT 359
Query 341 TAT-GATTTCGACTTTGTCACTGCAGAGAAT-TGCCAGAAGAGCAAGATTTTCTTCATTG 398
| | ||||| || ||| ||||||||||| || | ||| ||||||| ||||||||| | |
Sbjct 360 T-TCGATTTTGATTTTCTCACTGCAGAGGATGTCCCA-AAGAGCAGGATTTTCTTTGTAG 417
Query 399 CATGGTGTCCCGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCTAAGGACA 458
|||||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 418 CATGGTCTCCGGACACAGCAAAAGTGAGAAGCAAAATGATCTATGCGAGCTCTAAGGACA 477
Query 459 GGTTCAAGCGTGAACTTGATGGAATTCA-AGTGGAGCTTCAAGCAACTGATCCAACTGAG 517
|||||||| | ||||| || |||||||| | | |||||||| ||||| |||||||| |||
Sbjct 478 GGTTCAAGAGAGAACTAGACGGAATTCAGA-TCGAGCTTCAGGCAACCGATCCAACCGAG 536
Query 518 ATGGATCTTGATGTTTTGAAAAGCCG 543
||||||||||||||||| ||||||||
Sbjct 537 ATGGATCTTGATGTTTTCAAAAGCCG 562
> Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1
Length=813
Score = 207 bits (112), Expect = 8e-53
Identities = 154/174 (89%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 101 CGAAATTGTCTCTGACAC-CGTTTTGATT-CAGCCATGGCTAATGCTGCGTCAGGAATGG 158
|||| ||| |||||| || | | || || |||||||||| || || || || |||||||
Sbjct 116 CGAATTTG-CTCTGATACTAG-TGTGTTTCCAGCCATGGCGAACGCAGCATCTGGAATGG 173
Query 159 CAGTCCATGATGACTGCAAGCTAAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTT 218
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 174 CTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTT 233
Query 219 TCATTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTG 272
||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 234 TCATTGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTGGTTGTTGAGAAAGTTG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5