BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59910.1
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1 957 0.0
Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001 649 0.0
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 529 1e-149
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 473 7e-133
Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1 237 1e-61
> Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1
Length=698
Score = 957 bits (518), Expect = 0.0
Identities = 645/702 (92%), Gaps = 26/702 (4%)
Strand=Plus/Plus
Query 1 ATCAAGCAATCCAAAGCGATTAAACCTACTCAATCTCAGATCTCGTTAAACCTAGAAACC 60
||||||||||||||||| ||| | || | |||||||||||||||||||||||||||
Sbjct 1 ATCAAGCAATCCAAAGCCATT-TA---AC-C--TCTCAGATCTCGTTAAACCTAGAAACC 53
Query 61 TCGAGAAAAACCGTATCAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCA 120
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 TCGAG--AATCCGAATCAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCA 111
Query 121 GCTTCCGAGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GCCTCCGAGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAA 171
Query 181 CCAAAGGCCGGAAAGAAGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAG 240
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 172 CCAAAGGCCGGAAAGAAACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAG 231
Query 241 ATGAAGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTT 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATGAAGAAGAAGAGTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTT 291
Query 301 CATCCCGATATCGGAATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGAT 360
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 292 CATCCCGATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGAT 351
Query 361 ATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACT 411
Query 421 ATCACTTCTCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAG 480
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATCACGTCCCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAG 471
Query 481 CATGCCGTTTCTGAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAATAATTGAG 540
||||| ||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 472 CATGCTGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATAATTGAG 531
Query 541 TTAGGGTT-----CT-T---ATCATATGGATGTTGCTCTGCTTTAGGGTTAATGGAATTT 591
|||||||| || | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 532 TTAGGGTTTTTTTCTCTCTTATCATCTGGATGTTGCT--GCTTTAGGGTTAATGGAATTT 589
Query 592 GGAAGATCTGAGTTAGGGTT-TTAGAATGTCCTTTAAGTATCTCTGTTTCGTTTGGAATT 650
|| ||| |||| |||||||| ||||| |||||||||||||||| |||||||||| ||||
Sbjct 590 GGGAGAACTGAATTAGGGTTGTTAGATTGTCCTTTAAGTATCT--GTTTCGTTTGCAATT 647
Query 651 TCTACGTTTTGTAAGTACT---GCTGCTATTGATAATGTTTG 689
| ||||||||||||||||| |||||||||| | || ||||
Sbjct 648 TTTACGTTTTGTAAGTACTTCTGCTGCTATTGCTTATATTTG 689
> Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001
Length=414
Score = 649 bits (351), Expect = 0.0
Identities = 377/390 (97%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 142 GAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAAGCTC 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 25 GAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAAACTC 84
Query 202 CCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGAAGAAGAGTGTCGAG 261
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 85 CCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTATCGAG 144
Query 262 ACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCC 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCA 204
Query 322 AGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTTGCTCAA 381
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 205 AGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAA 264
Query 382 GAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAGATTCAG 441
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 265 GAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAG 324
Query 442 ACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCCGTTTCTGAGGGGACT 501
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 325 ACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACT 384
Query 502 AAAGCCGTCACGAAATTCACCAGCTCTTGA 531
|| |||||||||||||||||||||||||||
Sbjct 385 AAGGCCGTCACGAAATTCACCAGCTCTTGA 414
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 529 bits (286), Expect = 1e-149
Identities = 414/476 (87%), Gaps = 8/476 (2%)
Strand=Plus/Plus
Query 77 CAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCAGCTTCCGAGAAGCCGG 136
|||||||||||| ||||||||||||||| || |||||||||||||| ||||||| || |
Sbjct 72 CAATGGCGCCGAGAGCAGAGAAGAAGCCAGCGGAGAAGAAACCAGCCGCCGAGAAACCAG 131
Query 137 TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGA 196
| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 132 TAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAAAAGCCGGCAAGA 191
Query 197 AGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGAAGAAGAGTG 256
| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 192 AACTCCCGAAAGAAGCCGGCGCCGGCGGCGACAAAAAGAAGAAGATGAAGAAGAAGAGTG 251
Query 257 TCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAA 316
||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |
Sbjct 252 TCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAGATATTGGTA 311
Query 317 TCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTTG 376
| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 312 TTTCGAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATATCTTCGAGAAA-TTG 370
Query 377 -C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGA 434
| || || ||||||||||||||||||| |||||||| || ||||| |||||| ||||
Sbjct 371 GCATCG-GAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACGATTACTTCTAGGGA 429
Query 435 GATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCATGCCGTTTCT 492
||||||||||||||| ||| ||| | |||||||| ||| ||| |||| || || ||||||
Sbjct 430 GATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACACGCTGTTTCT 487
Query 493 GAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAATAATTGAGTTAGGGTT 548
||||| ||||| || || || |||||||||||||||||| | | | | ||||||||
Sbjct 488 GAGGGAACTAAGGCGGTGACCAAATTCACCAGCTCTTGATTTAGTAAATTAGGGTT 543
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 473 bits (256), Expect = 7e-133
Identities = 359/409 (88%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 128 AGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGG 187
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 101 AGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAG 160
Query 188 CCGGAAAGAAGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGA 247
|||| ||||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||
Sbjct 161 CCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGACAAGAAGAAGAAGATGAAGA 220
Query 248 AGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCG 307
|||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 221 AGAAGAGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAG 280
Query 308 ATATCGGAATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCG 367
|||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 281 ATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGATATCTTCG 340
Query 368 AGAAGCTTG-C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCAC 425
|||| ||| | || || ||||||||||||| ||||| |||||||| || ||||| ||
Sbjct 341 AGAAA-TTGGCATCG-GAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCAACGATTAC 398
Query 426 TTCTCGGGAGATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAGTTGGCGAAGCATG 484
|||| ||||||||||||||||||| ||| ||| | |||||||| ||| | ||||| || |
Sbjct 399 TTCTAGGGAGATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTCGCGAAACACG 457
Query 485 CCGTTTCTGAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAAT 533
| |||||||| || ||||| || || || ||||||||||||||||||||
Sbjct 458 CTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTCTTGAAT 506
> Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1
Length=488
Score = 237 bits (128), Expect = 1e-61
Identities = 224/271 (83%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 256 GTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGA 315
|||||||||||||||||||||||||||||||| || || ||||||||||| ||| | |||
Sbjct 122 GTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGA 181
Query 316 ATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTT 375
||||| | ||||| ||||| || |||||||||||||| || |||||||||||||| |||
Sbjct 182 ATCTCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTT 241
Query 376 GCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAG 435
||||| || |||| ||||| || || ||||| ||||| || ||||| || || |||||
Sbjct 242 GCTCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAG 301
Query 436 ATTCAGACTGCTGTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCCGTTTCTG 493
||||| |||||||||||| ||| || || |||||||| | || |||||||| ||||| |
Sbjct 302 ATTCAAACTGCTGTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAG 359
Query 494 AGGGGACTAAAGCCGTCACGAAATTCACCAG 524
| || || || || || || |||||||||||
Sbjct 360 AAGGCACGAAGGCGGTTACCAAATTCACCAG 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29850244011
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5