BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59950.5
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496130 jgi|Araly1|496130|fgenesh2_kg.8__1946__AT5G59950.1 1447 0.0
> Ahg496130 jgi|Araly1|496130|fgenesh2_kg.8__1946__AT5G59950.1
Length=1046
Score = 1447 bits (783), Expect = 0.0
Identities = 952/1030 (92%), Gaps = 25/1030 (2%)
Strand=Plus/Plus
Query 242 TTATTTCTATCTCCCCCGCCGTCGAAAGAGAAACGTCGATCGGAG-AACCTTTGAAATGT 300
|||||||| |||| |||||||| ||||||||||||||||||||| || | | || ||||
Sbjct 1 TTATTTCTCGCTCCTCCGCCGTCCAAAGAGAAACGTCGATCGGAGAAATC-TCGAGATGT 59
Query 301 CGACTGGATTAGATATGTCTCTCGACGACATGATCGCCAAGAACCGTAAGTCTCGTGGTG 360
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CGAATGGATTAGATATGTCTCTCGACGACATGATCGCCAAGAACCGTAAGTCCCGTGGTG 119
Query 361 GAGCCGGCCCCGCTCGTGGAACCGGATCCGGATCCGGACCGGGTCCGACTCGCCGCAACA 420
|||||||||||| | || | | ||||||||||||||||| |||||||||||||
Sbjct 120 GAGCCGGCCCCG--C------CC-G-T--GGATCCGGACCGGGTCCAACTCGCCGCAACA 167
Query 421 ACCCTAATCGGAAATCAACCCGATCTGCTCCATACCAATCAGCCAAGGCGCCGGAGTCCA 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 ACCCTAATCGGAAATCAAACCGATCTGCTCCATACCAATCAGCCAAGGCGCCGGAGTCCA 227
Query 481 CCTGGGGTCACGACATGTTCTCCGATAGATCTGAAGATCACCGATCGGGACGTTCCTCCG 540
|||||||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct 228 CCTGGGGTCACGACATGTTCTCCGATAGATCTGAAGATTTCC-CTC--CCCGTTCTTCCG 284
Query 541 CCGGAATCGAAACTGGAACCAAGCTCTACATTTCCAATTTGGATTACGGTGTCATGAACG 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 285 CCGGAATCGAAACTGGAACCAAGCTCTACATATCCAATTTGGATTACGGTGTCATGAACG 344
Query 601 AAGACATCAAGGAACTGTTTGCTGAAGTTGGAGAACTTAAACGCTACACAGTTCATTTTG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 345 AAGACATCAAGGAACTGTTTGCTGAAGTTGGAGAACTTAAACGCTACACAGTTCATTTCG 404
Query 661 ATAGAAGTGGAAGATCAAAGGGAACTGCTGAAGTAGTGTATTCTCGGCGTGGCGATGCAC 720
|||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 405 ATAGGAGTGGAAGATCAAAGGGAACTGCTGAAGTAGTATACTCTCGGCGTGGTGATGCAC 464
Query 721 TCGCAGCTGTGAAGAAGTATAATGATGTTCAGCTGGATGGAAAACCCATGAAGATAGAGA 780
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 465 TCGCAGCTGTGAAGAAGTACAATGATGTTCAGCTTGATGGAAAACCCATGAAGATAGAGA 524
Query 781 TTGTGGGCACTAATCTTCAAACTGCTGCAGCCCCGTCTGGTAGACCTGCGAATGGAAACT 840
|||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 525 TTGTGGGCACCAATCTTCAAACGGCTGCTGCCCCGTCTGGTAGACCTGCAAATGGAAACT 584
Query 841 CCAATGGTGCTCCATGGAGCAGAGGAGGACAAGGgagaggaggtcaacaacgaggtggtg 900
| ||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||
Sbjct 585 CTAATGGTGCTCCATGGAG-AG-G-AGGACAAGGGAGAGGTGGTCAACAACGAGGCGGTG 641
Query 901 gacgaggaggcggtggccgaggtggtggtggtcgtggtAGGCGTCCTGGTAAGGGCCCTG 960
| |||||||| |||| ||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 642 GTCGAGGAGGTGGTGCCCGTGGTGGTGGTGGTCGTGGCAGGCGTCCTGGTAAGGGTCCTG 701
Query 961 CAGAGAAGATTTCTGCGGAAGATCTTGATGCGGATCTTGATAAGTACCATTCTGGAGATA 1020
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CAGAGAAAATATCTGCTGAAGATCTTGATGCGGATCTTGATAAGTACCATTCTGGAGATA 761
Query 1021 TGGAGACAAACTAAGGAACGTGACTGATCTTCTCAAACCGGTAG-GGGTTTTAGGAGGAA 1079
|||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||| ||
Sbjct 762 TGGAGACAAACTAAGGAATGTGACCGATCTTCTCAAACCGCTAGAGGGTTTTAGGAGTAA 821
Query 1080 GAGAATCGAGAAAA-TGTTTGCCAGAGGCTTTACCACTTAGCGCCTTTTTGGCTGTGT-T 1137
||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 822 GAGGATCGAGAAAAATGTTTGCCAGAGGCTTTGCCACTTATCGCCTTTTTGGCTGTGTGT 881
Query 1138 -GTTCATTTGTTTCATTAGAATGACTTTACAGAATTGAGAATATGTGTTA-TTTAAAGTT 1195
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 882 TGTTCATTTGTTTCATTAGAATGACTCTACAGAATTGAGAATATGTGTTACTTTAAAGTT 941
Query 1196 GTTGTCTATCTTAATACCCTCAAGTGAAAGGCAGAGGAAGGAATACCAATTTCGTTTACA 1255
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||
Sbjct 942 GTTGTCTATCTTAATACCCTCGAGTAAAAGGCAGAGGAAGGAATACCAGTTTCGTCTACA 1001
Query 1256 GATCATATGC 1265
||||||||||
Sbjct 1002 GATCATATGC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5