BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59960.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496133 jgi|Araly1|496133|fgenesh2_kg.8__1949__AT5G59960.1 2224 0.0
Ahg887977 jgi|Araly1|887977|Al_scaffold_0781_1 1707 0.0
> Ahg496133 jgi|Araly1|496133|fgenesh2_kg.8__1949__AT5G59960.1
Length=1472
Score = 2224 bits (1204), Expect = 0.0
Identities = 1333/1396 (95%), Gaps = 6/1396 (0%)
Strand=Plus/Plus
Query 163 GTAGTTCCTTTTTGGATCAGT-GGTTTTTGAAATGGAGAAAGTTTCGTCGCCGTCTTCCT 221
|||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| ||| |
Sbjct 60 GTAGTTTCTTTTTGGATCAGTGGGTTTTTGGAATGGAGAAAGTTTCATCGCCGTTTTCTT 119
Query 222 CTTTTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTA 281
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 CTTCTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAGGAGATTAAGAAGAAGCTTA 179
Query 282 CACGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTACAAGACTTATTTGCTGATA 341
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 CTCGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTGCAAGACTTATTTGCTGATA 239
Query 342 TAGCTCTCGAAGTAGACGATCGAGCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGA 401
||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 240 TAGCTCTCGAAGTCGACGAAAGAGCGAAAGATGTGATCCTTAGCAAAGAAGAGGATGTGA 299
Query 402 TTACTTCTGATGAAGCAGATGCTGATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATT 461
|| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 300 TTTCTTCTGTTGAAGCAGATGCCGATGGTCCATTATGCTTTTTCGATGTCCTTGCTGATT 359
Query 462 ACTATGTGAAAGTGTCTGAGAGGGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGA 521
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 360 ATTATGTGAAAGTGTCTGAGAGGGGAAAGGATATACTTGATTTGATGGTCCAGCTCTGGA 419
Query 522 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTG 581
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTTCATAAATGGCTGTTTGAGGTTG 479
Query 582 AGCTTGACAATCAAGAAATACTCCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAA 641
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 480 AGCTTGAGAATCAAGAAATACTCCTGCGCTATTCTTCAGCTCTGGTGCAGGGAGCAACAA 539
Query 642 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 599
Query 702 TCCTTGAGGAAGTTGCTTTGGAGCAGATACGATTGaaaaaaaTTCCCATTCAGGCTCAGA 761
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 600 TTCTTGAGGAAGTTGCTTTGGAGCAGATGCGATTGAAAAAAATTCCCATTCAGGCACAGA 659
Query 762 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 719
Query 822 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCCGGAG 779
Query 882 ATTTCCTTGTTATCGAACTAACTGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGC 941
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 780 ATTTCCTTGTTATTGAACTAACGGATCAGCTGCAAAAACTGAAGGTGGAACCAGTACTGC 839
Query 942 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCA 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACCACTAGCA 899
Query 1002 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 959
Query 1062 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACC 1121
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTGGGGCGTTACC 1019
Query 1122 CGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1079
Query 1182 GCTGGAACTTTGTGGTTTCTTGCATTAAGGCGGTACTCTATTCTATCGTAAGGCTCATCT 1241
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1080 GCTGGAACTTTGTGGTTTCTTGCATCAAAGCGGTACTATATTCTATCGTAAGGCTCATCT 1139
Query 1242 TTTCACGGCGAGAAAAGCCAAGGCAGAGCTGAATAGCTTTTACTTTTGATGAAGCTTACA 1301
|||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 1140 TTTCACGGAGAGAAAAGCCAAGGCAGCGCTGAATAGCTTTTAGTTTTGACGAAGCTTACA 1199
Query 1302 GCAGGAATCCAATCCTTGTGTATATAATGTGGTTTTGGTCAAAGAGGCAAACCAGTGAAC 1361
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1200 GCAGGAATCCAATCCTTGTGTATATAATGTGCTTTTGGTCACAGAGGCAAACCAGAGAAC 1259
Query 1362 CTTACCTTCACCTGTATTACTGTCTACAGAGAAGATAAACTCCGTTTTGTGAAAGATCCC 1421
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1260 CTTACCTTCACCTGTATTACTATCTACAGAGAAGATAAACTCCGTTTTGTGAAAGAACCC 1319
Query 1422 ATGGATAAGCTTTTGACTTGTTTTGTTGTCATTGGTAAAATTGTTATTTTGCTATAGAGG 1481
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 ATGGAAAAGCTTTTGACTTGTTTTGTTGTCATTGGTGAAATTGTTATTTTGCTATAGAGG 1379
Query 1482 ACG-TGTATTGTGTCCAGAAACCCTTCTTGTGTAGAAGATAAACCATTTCGGCCTTCTGT 1540
| | || |||||| |||||| |||||||||||||| ||||||||||||||| || ||
Sbjct 1380 ATGATGCATTGTGACCAGAAGCCCTTCTTGTGTAGGAGATAAACCATTTCGTCC----GT 1435
Query 1541 TTTAGTTGTATTGGAT 1556
|||||||||| |||||
Sbjct 1436 TTTAGTTGTACTGGAT 1451
> Ahg887977 jgi|Araly1|887977|Al_scaffold_0781_1
Length=1092
Score = 1707 bits (924), Expect = 0.0
Identities = 1037/1090 (95%), Gaps = 13/1090 (1%)
Strand=Plus/Plus
Query 194 ATGGAGAAAGTTTCGTCGCCG---TCTTC--C-TC-T-TT-TTCACGGAGGTCTGCTTAT 244
|||||||||||||| |||||| ||||| | || | || |||||||||||||||||||
Sbjct 1 ATGGAGAAAGTTTCATCGCCGTCTTCTTCTTCTTCTTCTTCTTCACGGAGGTCTGCTTAT 60
Query 245 CTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTACACGGGCTGTTGTCTCTCCAGCA 304
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTGAAGCTCTTACACAGGAGATTAAGAAGAAGCTTACTCGGGCTGTTGTCTCTCCAGCA 120
Query 305 CAAACACGCAACTTGTTACAAGACTTATTTGCTGATATAGCTCTCGAAGTAGACGATCGA 364
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 CAAACACGCAACTTGTTGCAAGACTTATTTGCTGATATAGCTCTCGAAGTCGACGAAAGA 180
Query 365 GCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGATTACTTCTGATGAAGCAGATGCT 424
|| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
Sbjct 181 GCGAAAGATGTGATCCTTAGCAAAGAAGAGGATGTGATTTCTTCTGTTGAAGCAGATG-T 239
Query 425 -GATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATTACTATGTGAAAGTGTCTGAGAG 483
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 AGATGGTCCATTATGCTTTTTCGATGTCCTTGCTGATTATTATGTGAAAGTGTCTGAGAG 299
Query 484 GGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGAGCCAGTCCTTTGCATCACATAT 543
||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GGGAAAAGATATACTTGATTTAATGGTGCAGCTCTGGAGCCAGTCCTTTGCATCACATAT 359
Query 544 ATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTGAGCTTGACAATCAAGAAATACT 603
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 ATTCTCTCTACTGTTTCATAAATGGCTGTTTGAGGTTGAGCTTGAGAATCAAGAAATACT 419
Query 604 CCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAAATGTGTTCTGGATAGACATCCA 663
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTGCGCTATTCTTCAGCTCTGGTGCAGGGAGCAACAAATGTGTTCTGGATAGACATCCA 479
Query 664 GACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATCTCCTTGAGGAAGTTGCTTTGGA 723
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATCTTCTTGAGGAAGTTGCTTTGGA 539
Query 724 GCAGATACGATTGaaaaaaaTTCCCATTCAGGCTCAGAGGGAACTGTATCTCTTACTCTC 783
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GCAGATGCGATTGAAAAAAATTCCCATTCAGGCACAGAGGGAACTGTATCTCTTACTCTC 599
Query 784 TAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCGATAGCTTCTTGAGGAACTTCCC 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCGATAGCTTCTTGAGGAACTTCCC 659
Query 844 AGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAGATTTCCTTGTTATCGAACTAAC 903
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 660 AGAGTTTCCAAATGCTTTCTTGATTGGAGGACCCGGAGATTTCCTTGTTATTGAACTAAC 719
Query 904 TGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGCTACATTATCTTTCTCAGATGAA 963
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GGATCAGCTGCAAAAACTGAAGGTGGAACCAGTACTGCTACATTATCTTTCTCAGATGAA 779
Query 964 GATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCACAAGGTTAAAGGCGTGTTTATA 1023
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 GATTCTTCAAGGTATGGAACTGAGAATGACCACTAGCACAAGGTTAAAGGCGTGTTTATA 839
Query 1024 CAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAAGAGCCGTCCGTCATGCAGCCTG 899
Query 1084 GGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACCCGAGGCATCTCATTAGTCTATT 1143
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 900 GGATGCTTTGGATTCCCTCTTTCCTGTGGGGCGTTACCCAAGGCATCTCATTAGTCTATT 959
Query 1144 TTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCATGCTGGAACTTTGTGGTTTCTTG 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 TTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCATGCTGGAACTTTGTGGTT-CTTG 1018
Query 1204 CATTAAGG-CGGTACTCTATTCTATCGTAAGGCTCATCTTTTCACGGCGAGAAAAGCCAA 1262
||| || | || || | |||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1019 CATCAACGACGCTATTATATTCTATCGTAAGGCTCATCTTTTCACGGAGAGTTAACCCAA 1078
Query 1263 GGCAGAGCTG 1272
||||||||||
Sbjct 1079 GGCAGAGCTG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5