BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G59970.1 Length=552 Score E Sequences producing significant alignments: (Bits) Value Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 619 6e-177 Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 619 6e-177 Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 553 6e-157 Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 398 3e-110 > Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 Length=491 Score = 619 bits (335), Expect = 6e-177 Identities = 454/508 (89%), Gaps = 22/508 (4%) Strand=Plus/Plus Query 36 aaaaaaGAAATCT-AATTCTCTCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCT 94 |||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||| | Sbjct 1 AAAAAA-AAA-CTAAATT-TCTCGAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTT 57 Query 95 TGGGTAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 154 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 TGGGCAAAGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 117 Query 155 CCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCA 214 ||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||| | Sbjct 118 CCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGA 177 Query 215 TCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTG 274 ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 178 TCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTG 237 Query 275 TCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTC 334 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 238 TTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTC 297 Query 335 TCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGCGGTT-AATCAGGG-TTTTTCAGATT 392 |||||||||||||||||||||| |||||||||||||||| || | ||| ||||| || Sbjct 298 TCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTTGAA-CGGGGGTTTTTTT--TT 354 Query 393 -TGTGTTTGGAGATCTGTTTCTGGAAATTAGATTTGA-GAATTTCAATGTAGGTATTTTA 450 |||||||| ||||||||||||| ||||||| ||| | ||| | |||||| ||||||||| Sbjct 355 GTGTGTTTGTAGATCTGTTTCTGAAAATTAGGTTTCATGAACT-CAATGTGGGTATTTTA 413 Query 451 GTAAATGTAGCAAGATTTGATTTCCtttttttGCTATTTCGCTTTTGTAATGTGTTTTCA 510 |||| ||||| ||| |||||||||||||||| ||||||||| |||||||||| Sbjct 414 GTAATTGTAG-----TTT-----CCTTTTTTTGCTATTTGGCTTTTGTAGTGTGTTTTCA 463 Query 511 TTTGCTAAATTCTCAACAATGGAAACAC 538 ||||| |||||||||||||||||| ||| Sbjct 464 TTTGCAAAATTCTCAACAATGGAATCAC 491 > Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 Length=491 Score = 619 bits (335), Expect = 6e-177 Identities = 454/508 (89%), Gaps = 22/508 (4%) Strand=Plus/Plus Query 36 aaaaaaGAAATCT-AATTCTCTCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCT 94 |||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||| | Sbjct 1 AAAAAA-AAA-CTAAATT-TCTCGAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTT 57 Query 95 TGGGTAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 154 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 TGGGCAAAGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 117 Query 155 CCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCA 214 ||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||| | Sbjct 118 CCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGA 177 Query 215 TCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTG 274 ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 178 TCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTG 237 Query 275 TCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTC 334 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 238 TTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTC 297 Query 335 TCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGCGGTT-AATCAGGG-TTTTTCAGATT 392 |||||||||||||||||||||| |||||||||||||||| || | ||| ||||| || Sbjct 298 TCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTTGAA-CGGGGGTTTTTTT--TT 354 Query 393 -TGTGTTTGGAGATCTGTTTCTGGAAATTAGATTTGA-GAATTTCAATGTAGGTATTTTA 450 |||||||| ||||||||||||| ||||||| ||| | ||| | || ||| ||||||||| Sbjct 355 GTGTGTTTGTAGATCTGTTTCTGAAAATTAGGTTTCATGAACT-CATTGTGGGTATTTTA 413 Query 451 GTAAATGTAGCAAGATTTGATTTCCtttttttGCTATTTCGCTTTTGTAATGTGTTTTCA 510 |||||||||| ||| |||||||||||||||| ||||||||| |||||||||| Sbjct 414 GTAAATGTAG-----TTT-----CCTTTTTTTGCTATTTGGCTTTTGTAGTGTGTTTTCA 463 Query 511 TTTGCTAAATTCTCAACAATGGAAACAC 538 ||||| |||||||||||||||||| ||| Sbjct 464 TTTGCAAAATTCTCAACAATGGAATCAC 491 > Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 Length=428 Score = 553 bits (299), Expect = 6e-157 Identities = 334/351 (95%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 43 AAATCTAATTC-TC-TCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTA 100 |||||||| || || | || |||||||| || |||||||||||||||||||| ||||||| Sbjct 42 AAATCTAAATCTTCGTTGAAAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTA 101 Query 101 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 161 Query 161 CTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACG 220 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 162 CGGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACG 221 Query 221 AGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTT 280 ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 222 AGGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTT 281 Query 281 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGA 340 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 282 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGA 341 Query 341 GGCAAGGAAGGACTCTCTACGGATTCGGCGGTTAATCAGGGTTTTTCAGAT 391 |||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 342 GGCAAGGAAGGACTCTTTACGGATTCGGCGGTTAATCGGGGTTTTTCAGAT 392 > Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 Length=501 Score = 398 bits (215), Expect = 3e-110 Identities = 282/315 (90%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 58 GAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTAAAGGAGGAGCCAAGCGT 117 ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||| Sbjct 45 GAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGT 104 Query 118 CACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGAAGATTG 177 |||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||| Sbjct 105 CACAGGAAGGTTCTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTG 164 Query 178 GCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACGAGGAGACACGTGGCGTC 237 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 165 GCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTT 224 Query 238 CTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTTACACCGAGCACGCTA-G 296 |||||||||||| | ||||| || || ||||| || || |||||||| |||||||| | | Sbjct 225 CTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACG 283 Query 297 GAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCT 356 ||||||||| ||||| || ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 284 GAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCT 343 Query 357 CTACGGATTCGGCGG 371 ||| ||||||||||| Sbjct 344 CTATGGATTCGGCGG 358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20146150992 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5