BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59970.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 619 6e-177
Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 619 6e-177
Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 553 6e-157
Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 398 3e-110
> Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1
Length=491
Score = 619 bits (335), Expect = 6e-177
Identities = 454/508 (89%), Gaps = 22/508 (4%)
Strand=Plus/Plus
Query 36 aaaaaaGAAATCT-AATTCTCTCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCT 94
|||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 AAAAAA-AAA-CTAAATT-TCTCGAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTT 57
Query 95 TGGGTAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 154
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGGGCAAAGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 117
Query 155 CCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCA 214
||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 118 CCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGA 177
Query 215 TCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTG 274
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 178 TCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTG 237
Query 275 TCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTC 334
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 238 TTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTC 297
Query 335 TCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGCGGTT-AATCAGGG-TTTTTCAGATT 392
|||||||||||||||||||||| |||||||||||||||| || | ||| ||||| ||
Sbjct 298 TCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTTGAA-CGGGGGTTTTTTT--TT 354
Query 393 -TGTGTTTGGAGATCTGTTTCTGGAAATTAGATTTGA-GAATTTCAATGTAGGTATTTTA 450
|||||||| ||||||||||||| ||||||| ||| | ||| | |||||| |||||||||
Sbjct 355 GTGTGTTTGTAGATCTGTTTCTGAAAATTAGGTTTCATGAACT-CAATGTGGGTATTTTA 413
Query 451 GTAAATGTAGCAAGATTTGATTTCCtttttttGCTATTTCGCTTTTGTAATGTGTTTTCA 510
|||| ||||| ||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 414 GTAATTGTAG-----TTT-----CCTTTTTTTGCTATTTGGCTTTTGTAGTGTGTTTTCA 463
Query 511 TTTGCTAAATTCTCAACAATGGAAACAC 538
||||| |||||||||||||||||| |||
Sbjct 464 TTTGCAAAATTCTCAACAATGGAATCAC 491
> Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1
Length=491
Score = 619 bits (335), Expect = 6e-177
Identities = 454/508 (89%), Gaps = 22/508 (4%)
Strand=Plus/Plus
Query 36 aaaaaaGAAATCT-AATTCTCTCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCT 94
|||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 AAAAAA-AAA-CTAAATT-TCTCGAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTT 57
Query 95 TGGGTAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 154
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGGGCAAAGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 117
Query 155 CCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCA 214
||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 118 CCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGA 177
Query 215 TCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTG 274
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 178 TCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTG 237
Query 275 TCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTC 334
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 238 TTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTC 297
Query 335 TCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGCGGTT-AATCAGGG-TTTTTCAGATT 392
|||||||||||||||||||||| |||||||||||||||| || | ||| ||||| ||
Sbjct 298 TCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTTGAA-CGGGGGTTTTTTT--TT 354
Query 393 -TGTGTTTGGAGATCTGTTTCTGGAAATTAGATTTGA-GAATTTCAATGTAGGTATTTTA 450
|||||||| ||||||||||||| ||||||| ||| | ||| | || ||| |||||||||
Sbjct 355 GTGTGTTTGTAGATCTGTTTCTGAAAATTAGGTTTCATGAACT-CATTGTGGGTATTTTA 413
Query 451 GTAAATGTAGCAAGATTTGATTTCCtttttttGCTATTTCGCTTTTGTAATGTGTTTTCA 510
|||||||||| ||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 414 GTAAATGTAG-----TTT-----CCTTTTTTTGCTATTTGGCTTTTGTAGTGTGTTTTCA 463
Query 511 TTTGCTAAATTCTCAACAATGGAAACAC 538
||||| |||||||||||||||||| |||
Sbjct 464 TTTGCAAAATTCTCAACAATGGAATCAC 491
> Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1
Length=428
Score = 553 bits (299), Expect = 6e-157
Identities = 334/351 (95%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 43 AAATCTAATTC-TC-TCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTA 100
|||||||| || || | || |||||||| || |||||||||||||||||||| |||||||
Sbjct 42 AAATCTAAATCTTCGTTGAAAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTA 101
Query 101 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 161
Query 161 CTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACG 220
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 162 CGGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACG 221
Query 221 AGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTT 280
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 222 AGGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTT 281
Query 281 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGA 340
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 282 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGA 341
Query 341 GGCAAGGAAGGACTCTCTACGGATTCGGCGGTTAATCAGGGTTTTTCAGAT 391
|||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 342 GGCAAGGAAGGACTCTTTACGGATTCGGCGGTTAATCGGGGTTTTTCAGAT 392
> Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1
Length=501
Score = 398 bits (215), Expect = 3e-110
Identities = 282/315 (90%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 58 GAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTAAAGGAGGAGCCAAGCGT 117
||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 45 GAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGT 104
Query 118 CACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGAAGATTG 177
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||
Sbjct 105 CACAGGAAGGTTCTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTG 164
Query 178 GCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACGAGGAGACACGTGGCGTC 237
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 165 GCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTT 224
Query 238 CTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTTACACCGAGCACGCTA-G 296
|||||||||||| | ||||| || || ||||| || || |||||||| |||||||| | |
Sbjct 225 CTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACG 283
Query 297 GAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCT 356
||||||||| ||||| || ||||||||||| || ||||| ||||| |||||||| |||||
Sbjct 284 GAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCT 343
Query 357 CTACGGATTCGGCGG 371
||| |||||||||||
Sbjct 344 CTATGGATTCGGCGG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5