BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59980.2
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332265 jgi|Araly1|332265|fgenesh1_pm.C_scaffold_8001608 3022 0.0
> Ahg332265 jgi|Araly1|332265|fgenesh1_pm.C_scaffold_8001608
Length=2043
Score = 3022 bits (1636), Expect = 0.0
Identities = 1894/2019 (94%), Gaps = 16/2019 (1%)
Strand=Plus/Plus
Query 1 ATGGGATTCTTCGATCTTAGCATTCCGTACAATGAGCCGCCACGATCAGGTGGTAAGGAA 60
||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGGTTCTTCGATCTAAGCATTCCATACAATGAGCCGCCGCGATCAGGCGGTAAGGAA 60
Query 61 ATCGCCGGCGGGAAAACCTTACGATTAAAGCTCGCCACGAAAGCCATGGAGCTAGGCTAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 ATCGCCGGCGGGAAAACCTTACGATTAAAGCTCGCCACGAAAGCCATGGAATTGGGCTAT 120
Query 121 GTTGGGATCGCACATAACCGTTCGATCAAAGGCGTAATGTCTGACAAAGACTCTTGTACG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGGGATCGCACATAATCGTTCGATCAAAGGCGTAATGTCTGACAAAGACTCTTGTACG 180
Query 181 ATCCCTCTTCTCACTCTTGGGTCTCTAATCAAAGTCGCTCCGCGGTTAGCTTCTTCTGTC 240
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 181 ATTCCTCTTCTCACTCTTGGATCTCTTATCAAAGTCGCTCCGCGGTTAGCTTCCTCTGTT 240
Query 241 GGATTCCATCGCGATTTACTCGGTGTTCCGCGAACTACTCCGTTTCGGCAGTACACGCGT 300
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 241 GGATTCCATCGCGATTTACTCGGTGTCCCCCGAGCTACTCCGTTTCGGCAGTACACGCGT 300
Query 301 CTCACAGTTCATGTGGAGAGTAATGCTCAGTGTCAGAGTTTGAATTCTGGGAATCCGATT 360
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTCACCGTTCATGTGGAGAGTAATGCTCAATGTCAGAGTTTGAATTCTGGGAATCCGATT 360
Query 361 CTAAAGAGTTATGATATTATTGCTGTTAGGCCGATGAATCAGAACGCTTTCGATTATGCC 420
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CTAAAGAGCTACGATATTATTGCTGTTAGGCCCATGAATCAGAACGCTTTCGATTATGCC 420
Query 421 TGTGAGAAAGCTGAGGTTGATCTTATTTCGATAGATTTTACGGACAAGATGTTATTCCGA 480
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 TGTGAGAAAGCTGAGGTTGATCTAATTTCGATTGATTTTACGGACAAGATGTTATTCCGA 480
Query 481 TTGAAGCATCCCATGGTTAAAGCTGCTATTCAGCGAGGGATTTACTTTGAGATTAAGTAC 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 481 TTGAAGCATCCCATGGTTAAAGCTGCCATTCAGCGAGGGATTTACTTTGAGATCAAGTAC 540
Query 541 TCTGATATCCTTATGGATGCACAAACGAGGAGACAAGTTATATCAAATGCTAAGTTACTG 600
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTGATCTCCTAATGGATGCACAAACGAGGAGACAAGTTATATCAAATGCTAAGTTACTG 600
Query 601 GTGGATTGGACTAGGGGGAAGAATCTAATTATATCAAGTGGTGCTCCTTCAGTCACAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGGATTGGACTAGGGGGAAGAATCTAATTATATCAAGTGGTGCTCCTTCAGTCACAGAA 660
Query 661 CTTAGAGGTCCAAATGATGTCATAAATCTCATGT-TCTTACTTGGACTCTCTGCTGAAAG 719
|||||||||||||| ||||||||||||||||||| | ||||||||||||||| || ||||
Sbjct 661 CTTAGAGGTCCAAACGATGTCATAAATCTCATGTGT-TTACTTGGACTCTCTTCTCAAAG 719
Query 720 AGCTAGAGCTGCCATTTCAAAAAATTGTAGGAATATGATAGCCAAGGTTTTAAAGAAAAA 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 AGCTAGAGCTGCCATTTCAAAAAATTGTAGGATTATGATAGCCAAGGTTTTAAAGAAAAA 779
Query 780 ACGGTTTCACAAAGAAGCTGTCAGGGTTGAATTACTTTCTGCTGGTGATACTTTTAGCCT 839
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 780 ACGGTTCCACAAAGAAGCTGTCAGGGTTGAATTACTTTCTTCTGGTGATACCTTTAGCCT 839
Query 840 CGAACAGCCTCTGTCTGAAGATTGCATGAAATGGGATCGCCTTTCGAGCGGTGAAGGTGA 899
|| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 840 CGGACAGCCTCTGTCTGAAGATTGCATGAAATGGGATCCCCTCTCGAGCGGTGAAGGTGA 899
Query 900 CATGCTTTTGGATGATCTTGCAAAGGCTTTTGATGCCACAAATGTTGTGGCGCACAAATC 959
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 CATGCTTTTAGATGATCTTGCAAAGGCTTTTGATGCCACAAATGCTGTGGCGCACAAATC 959
Query 960 CTCGAAGGCGATTGATTTCACCTCTGTTCTTGATGGCTTGCCAAAACATGGTTTCCGGGT 1019
|| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 ATCTAAGGCGATAGATTTCACCTCTGTTCTTGATGGCTTGCCAACACATGGTTTCCGGGT 1019
Query 1020 TAAGGATATTGTAGGAACTGAATCAGTGACTCAGCCTTCTGCAGCTAAGGTGATTGAC-- 1077
|||||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1020 TAAGGATATTGTAGGAACTGAACCATTGACTCAGTCTCCTGCAGCTAAGGTGATTGACGG 1079
Query 1078 ACTCAGGTGCACAGTAGTAATCAAGTTTCTGAACTACGTATGGCCA---CAGCTTCATCT 1134
|| | || |||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 1080 AC-C-GGAGCACAGTA--A-TCAAGTTTCTGAACTACGTATGGCCGTGGCAGCTTCATCT 1134
Query 1135 GATGATAACCTTCGGGAAATTGAAACCATAAGCCAAATTGACATGCTGATGTCTGAAGAT 1194
|||||||| ||| |||||||||||||||||||||||||||| | || || |||||||||
Sbjct 1135 GATGATAATCTTGGGGAAATTGAAACCATAAGCCAAATTGAAACGCAAATATCTGAAGAT 1194
Query 1195 GACAATAAGGTGGAACCTACTACAAATGTCCTCAAAGAAGAAGCATTTGCCCTAAGGAAA 1254
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 GACAGTAAGGTGGAACCTACTACAAATGTCCTCAAGGAAGAAGCATTTGCCCTAAGGAAA 1254
Query 1255 TGCAGTGCCAGCCATGGCCAGGGGATTTTGGTGCAAAATCAGACGGCTACTCCCTTTACA 1314
|||||||||||||||||||||||||||||| |||||||||| || ||| || ||||||||
Sbjct 1255 TGCAGTGCCAGCCATGGCCAGGGGATTTTGTTGCAAAATCATACAGCTGCTTCCTTTACA 1314
Query 1315 CTGACAAGATGTACAAAGTCAGAAGCAGCGTCGGATGTTAGCATGAATATTGAGTCGACT 1374
|||| |||||||||||||||||| ||||| || |||||||||||| ||||||||||||||
Sbjct 1315 CTGATAAGATGTACAAAGTCAGATGCAGCTTCTGATGTTAGCATGCATATTGAGTCGACT 1374
Query 1375 TCCGAAGGTGGATCAATGTCACCGTCAAAAAGCGATCATGGGATCCCACAAAGTCCTGTT 1434
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1375 TCCGAAGGTGGATCAATGTCACCATCAAAAAGCGATCATGGGATCCCACAAAGTCCTGTT 1434
Query 1435 GAAGTGAATAA-CATGGGAAA-TGCTGCTTTTGAAGAAGAAGCCTCAGTGGACGAAAACA 1492
||||||| ||| ||||||||| | ||||||||| |||||||||||||||||||| ||||
Sbjct 1435 GAAGTGA-TAAACATGGGAAAATT-TGCTTTTGATGAAGAAGCCTCAGTGGACGAGAACA 1492
Query 1493 GCAAAGAAAGAGCTACTACTGGTCATGCTAGTAATGATGAGATGCATATCACTGAGTCTG 1552
|||||||||||| |||||| |||| ||||||| |||||||||||||||||||||| |||
Sbjct 1493 GCAAAGAAAGAGTTACTACCGGTCCTGCTAGTCTTGATGAGATGCATATCACTGAGCCTG 1552
Query 1553 GACACCACGCATCCATTGATGATGAGAAGCATATCCCTGAGCCTGAACACCTCACATCCA 1612
|||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1553 GACACCACGCATCCATCGATGATGAGCAGCATATCGCTGAGCCTGAACACAACACATCCA 1612
Query 1613 TTGCTGATGAGATGAAAATTGATTGTTCTTCGGAAGCAAATCACGACGAGTACATGGAGG 1672
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TTGCTGATGAGATAAAAATTGATTGTTCTTCGGAAGCAAATCACGACGAGTACATGGAGG 1672
Query 1673 TCACAATGGAAGACCAGATGCATGAAACAGGTGACAGTAAGATTATTCTTCCTAACTTAT 1732
| ||| || ||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1673 TGACATTGAAAGACCAGAAGCATGAAACAGGTGACAGTAATATTAATCTTCCTAACTTAT 1732
Query 1733 CCTCTGAGACTACCGATTTGCTAAGTGAATCAGGTAAATCTCTCAGTCCAGATGCGGTTG 1792
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1733 CCTCTGAGACTACCGATTTGCTAAGTAAATCAGGTAAACCTCTCAGTCCAGAGGCGGTTG 1792
Query 1793 TGCAAGACCATGACGAAGCATCAAGACTAGAGTCCGATGAGACAAAGCTCGAGGAAGAGG 1852
| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1793 TACAAGACCATGACGAAGCATCAAGATTAGAGTCCAATGAGACAAAGCTCGAGGAAGAGC 1852
Query 1853 CATCAGTTCCAAACCACAACACCTTTGAGATAACAATGGAAGACAATAAGGTCGAAGAGT 1912
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1853 CATCAGTTCCATACCACAACACCTTTGAGATAACAATGGAAGACAATAAGGTCGCAGAGT 1912
Query 1913 TAACAATTGAAGACGAGAAGGTTGAAAAGACTGAAACCGAAGCTAGTCACCAAGCCCAAG 1972
|||||||||||||||||||| | |||||||||||||||| ||| |||||||| |||||
Sbjct 1913 TAACAATTGAAGACGAGAAGAAAGGAAAGACTGAAACCGAAACTAATCACCAAGGCCAAG 1972
Query 1973 TCCAATCCTCTGAAAATAACAATGACACAAAATCAGGTA 2011
||||| ||||||| |||||||||||||||||||||||||
Sbjct 1973 TCCAACCCTCTGAGAATAACAATGACACAAAATCAGGTA 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79684792540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5