BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G59990.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950749 jgi|Araly1|950749|scaffold_802636.1 1195 0.0
> Ahg950749 jgi|Araly1|950749|scaffold_802636.1
Length=766
Score = 1195 bits (647), Expect = 0.0
Identities = 714/747 (96%), Gaps = 2/747 (0%)
Strand=Plus/Plus
Query 1 ATGTGTGGACACGTCAGCACTTCTATAACCTCCGGCGACAACTGTCCATGTTTTCTATAC 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 21 ATGTGTGGACACGTCAGCACTTCCATAACCTCCGGCGACAATTGTCCATGTTTCCTATAC 80
Query 61 TCCGACGACATAGTGGCTCCTCCTCAGCTGCTTGATCATCATCATCATCAGTTCCCGCCT 120
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 81 TCCGACGACATAGTGGCTCCTCCTCAACTGCATGATGATCATCATCATCAGTTCCCGCCT 140
Query 121 CCGCCTTTGGCGCTTCTTATGATGAGCCAAAACTCTCTATACGCGGCCGAGGCGGTTTCA 180
||||||||| |||||||||||||| |||| ||||||||||||||||| || |||||||||
Sbjct 141 CCGCCTTTGCCGCTTCTTATGATGTGCCACAACTCTCTATACGCGGCAGATGCGGTTTCA 200
Query 181 GGGTTCGGTTACTTTGATTCCGGCATGAACGGTGGTGGTGGAAGCAGCAGCTGCGACTCG 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 201 GGGTTCGGTTACTTTGATTCCGGCATGAACGGTGGGGGCGGAAGCAGCAGCTGCGACTCG 260
Query 241 CCAAGCTCTATGGGGAGTGGCGGAGAGAGTCTTGTTATGCAGAGGAGTGTTAGTAGCCAT 300
||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 261 CCAAGCTCTATAGGCAGTGGCGGAGAGAGTCTTGTTATGCAGAGAAGTGCTAGTAGCCAT 320
Query 301 AATGGCTTTTCCGGTAATTACACAGCGGCCCATGATTTCGTTAACGATGATGATGGGCCA 360
||||||||||| ||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct 321 AATGGCTTTTCTGGTAATTACGCAACGGCCCACGATTTCGTTAACAATGATGATGGGCCA 380
Query 361 GTGAGACGGGCCCTTAGCGCCGGAGATCTACCCAGGAGTAGCAGAAGAGAGAGCAGTACG 420
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 381 GCGAGACGGGCCCTTAGCGCCGGAGATCTACCCAGGAGTAGTAGAAGAGAGAGCAGTACA 440
Query 421 GTGTGGAGTGAGAGCAATGCAATAATAGAAGGAATGAGCAAAGCCTACAAGTATAGTCCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTGTGGAGTGAGAGCAATGCAATAATAGAAGGAATGAGCAAAGCCTACAAGTATAGTCCT 500
Query 481 GAGGAGAAGAAAGAAAAGATCGAGAAATATCGTAGCAAACGAAACCTTAGGAATTTCAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GAGGAGAAGAAAGAAAAGATCGAGAAATATCGTAGCAAACGAAACCTTAGGAATTTCAAC 560
Query 541 AAGAGGATTAAGTACGAATGCAGGAAGACATTAGCGGACAGTAGGCCAAGAATAAGAGGG 600
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 561 AAGAGGATTAAGTATGAATGCAGGAAGACATTAGCAGACAGTAGGCCAAGAATAAGAGGG 620
Query 601 AGATTTGCAAGAAATGATGAGATCTCACAACAAGAACAAGTTGATGTTATGGAAGCCGTG 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 621 AGATTTGCAAGAAATGATGAGATATCACAACAAGAACAAGTTGATGTTATGGAAGCCGTG 680
Query 661 GTAGGAGATGTCGACACGTGGGCATCTTTTCTTGATTCTTTCTCTGCTAATCACTTCCTC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GTTGGAGATGTCGACACGTGGGCATCTTTTCTTGATTCTTTCTCTGCTAATCACTTCCTT 740
Query 721 AACTAATTTAATCTCTTCT-ATGTTTG 746
||||| |||||||||| || |||||||
Sbjct 741 AACTAGTTTAATCTCT-CTTATGTTTG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5