BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60000.1
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950751 jgi|Araly1|950751|scaffold_802638.1 688 0.0
> Ahg950751 jgi|Araly1|950751|scaffold_802638.1
Length=490
Score = 688 bits (372), Expect = 0.0
Identities = 425/451 (94%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 1 ATGGACACTCTTATAATGGTCTCGATCATGACTATGATGTTATTTTCTACGTTCGCAACC 60
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 21 ATGGACACTCTTATAATAGTCTCGATCATGACCATGATGATATTTTCTACGTTCGCAACC 80
Query 61 ACACGTGCCGCCACTCTTCTCGTGTCCAACGAGCTGAAGAGACGTGGTGATGTTCCTGTC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACACGTGCTGCCACTCTTCTCGTGTCCAACGAGCTGAAGAGACGTGGTGATGTTCCTGTC 140
Query 121 TTCGTCACGTGCCACCGAACCCCTTGGCTCTCCAAACTCGTACCTTTAGGTCAGAAGTTG 180
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 141 TTCGTCACGTGCCACCCAACCCCTTGGCTGTCCAAACTCGTACCATTAGGTCAGAAGTTG 200
Query 181 CTGATAGAGATCCCAACCACTACCGGCGACAATGCTGTTGATGAGAAGGCG-CAAGGATC 239
|||||||| || |||| ||| |||||||||| | ||||||||||||||| | |||||
Sbjct 201 CTGATAGAAATTCCAAAGACTGTCGGCGACAATTCCGTTGATGAGAAGGCGGCT-GGATC 259
Query 240 TAGACCGTGGCAGCCAAGAACTTGCATAGGAACGTTTTACAGAGAAGCACATTTCGGGAT 299
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 TAGACCGTGGCGGCCAACAACTTGCATAGGAACGTTTTACAGAGAAGCACATTTCGGAAG 319
Query 300 GCACGAGACACCGTACGTTTTGTACAATTCGGACAAAGATGCTACGGAGTCTAAAAACTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 320 GCACGAGACACCGTACGTTTTGTACAATTCGGACAAAGATGCTACGGAGTGTAAAAACTC 379
Query 360 ATGTTTCGTCGTTGTCAAAGACGATGGATTTTATCGTTGGAACAACAATAAGAGAATCTG 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 380 ATGTTTCGTCGTTGTCAAGGACGATGGATTTTATCGTTGGAACAACAATAAGAGAGTCTG 439
Query 420 GGACAAGGTTTTTCCGATCATTTGGAACTAA 450
||||||||||||||||||||||||||| |||
Sbjct 440 GGACAAGGTTTTTCCGATCATTTGGAAGTAA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16254280914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5