BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60010.1
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917747 jgi|Araly1|917747|Al_scaffold_0008_2498 4327 0.0
Ahg897391 jgi|Araly1|897391|Al_scaffold_0005_1357 1653 0.0
> Ahg917747 jgi|Araly1|917747|Al_scaffold_0008_2498
Length=2661
Score = 4327 bits (2343), Expect = 0.0
Identities = 2555/2661 (96%), Gaps = 0/2661 (0%)
Strand=Plus/Plus
Query 1 ATGAAAAGTAACACTCCTACGGAGGATTCAACAAAATGGATGTTAGAGAGTGTAGAGATC 60
||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAATAACATTCCTACCGAGGATTCGACAAAATGGATGTTAGAGAGTGTAGAGATC 60
Query 61 GATTCAATGGGTGAAAGCTCCTCAAAAGAACCCGAAATTAACCTCAACAAGAACGAAGGT 120
||||||||||||||| | || || ||||||||||||||||||||||||||||| ||||||
Sbjct 61 GATTCAATGGGTGAAGGTTCGTCCAAAGAACCCGAAATTAACCTCAACAAGAATGAAGGT 120
Query 121 GGTCTGAAGAAGAACGCGTCAAGAAATCTCGGCGTGGGATCGATAATCCGAACATTGAGC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 GGTCTGAAGAAGAATGCGTCAAGAAATCTCGGCGTGGGATCGATAATCCGAACGTTAAGC 180
Query 181 GTTTCAAACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGAAAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTTCAAACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGGAAC 240
Query 241 CTGGGGCCTCCGACCAATGCCGTGCCCAAGAAGACAGGTCCACAAAGAGTGGAGAGGACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGGGCCTCCGACCAATGCCGTGCCCAAGAAGACAGGTCCACAAAGAGTGGAGAGGACA 300
Query 301 ACATCAAGCGCGGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACCGGA 360
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACATCTAGCGCCGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACCGGA 360
Query 361 CGAGAACGAGATGCATGGAGATCGATTGAGAACCGGTTCAATCAGTTCTCTGTTGATGGC 420
|||||||||||||||||||| ||||||||||| || || |||||||| ||||| ||||||
Sbjct 361 CGAGAACGAGATGCATGGAGGTCGATTGAGAATCGATTTAATCAGTTTTCTGTCGATGGC 420
Query 421 AAGTTGCCTAAAGAGAAATTCGGCGTCTGCATTGGAATGGGAGACACAATGGAGTTTGCG 480
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 AAATTGCCTAAAGAGAAATTCGGCGTCTGCATTGGAATGGGAGACACGATGGAGTTTGCT 480
Query 481 GCAGAAGTTTATGAAGCATTGGGTCGGAGGAGACAAATAGAGACAGAAAACGGTATTGAC 540
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 481 GCAGAAGTTTATGAGGCATTGGGTCGGAGAAGACAAATAGAGACAGAAAACGGTATCGAC 540
Query 541 AAAGAACAACTCAAGCTGTTTTGGGAAGACATGATCAAGAAAGACCTCGATTGTCGTCTT 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGAACAACTCAAGGTGTTTTGGGAAGACATGATCAAGAAAGACCTCGATTGTCGTCTT 600
Query 601 CAGATCTTCTTCGACATGTGTGACAAAAACGGAGATGGTAAGCTGACGGAAGAGGAAGTG 660
|||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 601 CAGATCTTTTTCGACATGTGTGACAAGAACGGAGATGGTAAGCTCACAGAAGAGGAAGTG 660
Query 661 AAAGAGGTCATAGTATTGAGTGCCTCGGCGAACCGCCTCGGGAATTTAAAAAAGAATGCT 720
|||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||| |||
Sbjct 661 AAAGAGGTCATAGTCTTGAGCGCCTCCGCGAACCGCCTAGGGAATTTGAAAAAGAACGCT 720
Query 721 GCAGCTTACGCATCTTTGATCATGGAAGAACTCGACCCTGATCATAAAGGATACATAGAG 780
|| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 721 GCGGCTTACGCGTCTTTGATCATGGAAGAACTCGACCCCGATCACAAAGGATACATAGAG 780
Query 781 ATGTGGCAGTTAGAAATACTACTAACAGGAATGGTGACAAACGCTGATACGGAGAAGATG 840
|||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATGTGGCAGTTAGAGATACTATTAACAGGAATGGTGACAAACGCTGATACAGAGAAGATG 840
Query 841 AAGAAATCGCAAACGCTGACACGCGCGATGATCCCAGAGCGGTACAGAACGCCGATGAGC 900
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 841 AAGAAATCTCAAACGCTGACACGCGCAATGATCCCAGAGCGTTACAGAACGCCGATGAGC 900
Query 901 AAGTACGTCTCCGTAACCGCGGAACTGATGCACGAGAATTGGAAAAAATTATGGGTACTC 960
|| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAATACGTTTCAGTAACCGCAGAACTGATGCACGAGAATTGGAAAAAATTATGGGTACTC 960
Query 961 GCTTTGTGGGCCATCATCAACGTCTATCTATTCATGTGGAAGTACGAAGAGTTCATGAGA 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 961 GCTTTGTGGGCCATCATCAACGTTTATCTATTCATGTGGAAGTACGAAGAGTTTATGAGA 1020
Query 1021 AACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCCGCTAAAGGCGCTGCTGAAACG 1080
|||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 1021 AACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCAGCTAAAGGTGCGGCCGAAACG 1080
Query 1081 CTGAAACTCAACATGGCTCTGATTTTGGTCCCAGTCTGTAGAAAAACCCTAACGATACTT 1140
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1081 CTGAAACTCAACATGGCTCTGATTTTGGTCCCGGTCTGTAGAAAAACCCTAACGATCCTT 1140
Query 1141 AGGTCAACGTTCTTGAACCGTGTGGTCCCATTCGACGACAACATAAACTTCCACAAGGTG 1200
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGTCAACGTTTTTGAACCGTGTGGTCCCATTCGACGACAACATAAACTTCCACAAGGTG 1200
Query 1201 ATTGCATATATGATCGCGTTCCAGGCTTTGCTCCACACGGCACTTCACATCTTCTGTAAC 1260
||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1201 ATTGCGTATATGATCGCGTTCCAGTCTTTGCTTCACACGGCACTTCACATCTTCTGTAAC 1260
Query 1261 TACCCTAGGTTAAGCTCGTGCTCTTACGACGTGTTCTTGACGTACGCGGGTGCTGCCTTG 1320
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1261 TACCCTAGGTTAAGCTCGTGCTCTTACGACGTGTTCTTGACGTACGCGGGAGCTGCCTTG 1320
Query 1321 GGAAATACGCAACCGAGTTACCTAGGTTTAATGTTGACGTCAGTGTCGATCACGGGTGTT 1380
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1321 GGAAACACGCAACCGAGTTACCTAGGTTTAATGATGACGTCAGTGTCGATCACGGGAGTT 1380
Query 1381 TTAATGATTTTCTTCATGGGATTCTCGTTTACACTGGCGATGCATTATTTTAGAAGGAAC 1440
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 TTAATGATATTCTTCATGGGATTCTCGTTTACACTGGCCATGCATTATTTTAGAAGGAAC 1440
Query 1441 ATAGTGAAATTGCCTAAACCGTTTAACGTTCTTGCTGGGTTTAATGCGTTTTGGTATGCT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ATAGTGAAATTGCCTAAACCGTTTAACGTTCTTGCTGGGTTTAATGCGTTTTGGTATGCT 1500
Query 1501 CATCATTTGTTGGTTCTTGCTTATATTCTTCTCATCATCCATGGTTACTATCTTATCATC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CATCATTTGTTGGTTCTTGCTTATATTCTTCTCATCATCCATGGTTACTATCTTATCATC 1560
Query 1561 GAGAAGCCTTGGTACCAGAAGACGACATGGATGTATTTGGCCGTGCCGATGTTGTTCTAC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1561 GAGAAGCCTTGGTACCAGAAGACGACATGGATGTATTTGGCCGTGCCGATGCTGTTCTAC 1620
Query 1621 GCGAGTGAGAGGCTATTCTCACGTCTCCTTCAAGAACACAGCCATCGTGTCAACGTTATT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GCGAGTGAGAGGCTATTCTCACGTCTCCTTCAAGAACACAGCCATCGTGTCAACGTTATT 1680
Query 1681 AAGGCTATTGTATATTCGGGGAACGTTCTTGCACTTTATGTTACAAAACCTCCCGGATTC 1740
|||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct 1681 AAGGCTATTGTATATTCGGGCAACGTTCTTGCACTTTACGTAACCAAACCTCCTGGATTC 1740
Query 1741 AAATACAAAAGTGGCATGTACATGTTTGTCAAGTGTCCAGATCTCTCAAAATTTGAATGG 1800
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1741 AAATACAAAAGTGGCATGTACATGTTTGTCAAGTGTCCTGATCTCTCAAAATTTGAATGG 1800
Query 1801 CATCCATTCTCCATCACTTCTGCACCAGGAGATGACTATTTAAGTGTTCACATTAGAGCC 1860
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1801 CATCCGTTCTCAATCACTTCTGCACCAGGAGATGATTATTTAAGTGTTCACATTAGAGCC 1860
Query 1861 TTAGGAGATTGGACCACTGAACTTAGGAGCAGATTTGCAAAGACATGCGAGCCTACTCAA 1920
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1861 TTGGGAGATTGGACCACTGAACTTAGGAGCAGATTCGCAAAGACATGCGAGCCTCCTCAA 1920
Query 1921 GCAGCCGCTAAACCTAAACCAAACAGTCTTATGAGGATGGAAACAAGAGCTGCGGGTGTG 1980
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GCAGCCGCAAAACCTAAACCAAACAGTCTTATGAGGATGGAAACAAGAGCTGCGGGTGTG 1980
Query 1981 AATCCTCACATTGAAGAATCACAAGTCTTGTTCCCAAAAATATTCATCAAAGGACCGTAT 2040
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1981 AATCCTCACATTGAAGAATCACAAGTCTTATTCCCAAAAATATTCATCAAAGGACCTTAT 2040
Query 2041 GGAGCTCCGGCACAAAATTATCAGAAGTTCGACATCCTCTTACTAGTTGGGCTAGGGATT 2100
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2041 GGAGCTCCGGCACAAAATTATCAGAAGTTCGATATCCTCTTACTAGTTGGACTAGGGATA 2100
Query 2101 GGGGCAACTCCATTCATAAGCATTTTGAAGGACATGTTAAACCATCTGAAACCCGGAATT 2160
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 2101 GGGGCAACTCCATTCATAAGCATTTTGAAAGACATGTTAAACCATCTAAAACCTGGGATT 2160
Query 2161 CCCAGAAGTGGGCAAAAGTACGAAGGAAGTGTAGGAGGAGAGAGTATAGGAGGTGATAGT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CCCAGAAGTGGGCAAAAGTACGAAGGAAGTGTAGGAGGAGAGAGTATAGGAGGTGATAGT 2220
Query 2221 GTTAGTGGTGGAGGAGGCAAGAAGTTTCCTCAAAGAGCATAttttttttGGGTGACAAGA 2280
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2221 GTTAGTGGCGGAGGAGGAAAGAAGTTTCCGCAAAGAGCATATTTTTTTTGGGTGACAAGA 2280
Query 2281 GAACAAGCTTCCTTTGATTGGTTCAAGGGAGTTATGGATGACATCGCAGAGTATGATAAA 2340
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2281 GAACAAGCTTCCTTTGATTGGTTCAAGGGAGTTATGGATGACATCGCCGAGTATGATAAA 2340
Query 2341 ACCCATGTAATAGAAATGCATAACTACTTAACAAGCATGTACGAAGCTGGAGATGCAAGA 2400
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2341 ACCCATGTGATAGAAATGCATAACTACTTAACAAGCATGTACGAAGCGGGAGATGCAAGA 2400
Query 2401 TCTGCCCTTATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTC 2460
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 TCTGCCCTAATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTC 2460
Query 2461 TCCGAAAGCCGGATACGAACACATTTTGCAAGACCTAATTGGAGGAAGGTTTTTTCTGAA 2520
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2461 TCCGAAAGCCGGATACGAACACATTTCGCAAGACCTAATTGGAGGAAGGTTTTTTCTGAG 2520
Query 2521 TTGTCAAGCAAACACGAAGCTTGTCGAATAGGTGTATTCTACTGTGGAAGTCCAACACTG 2580
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 TTATCAAGCAAACACGAAGCTTGTCGAATAGGTGTATTCTACTGTGGAAGTCCAACACTG 2580
Query 2581 GTTCGACCACTTAAAGAACTCTGTCAGGAGTTTAGTCTCGAGTCATCCACTCGTTTTACT 2640
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2581 GTTCGACCACTTAAAGAACTTTGTCAGGAGTTTAGTCTCGAGTCTTCCACTCGTTTTACT 2640
Query 2641 TTCCACAAGGAAAATTTTTAA 2661
|||||||||||||| ||||||
Sbjct 2641 TTCCACAAGGAAAACTTTTAA 2661
> Ahg897391 jgi|Araly1|897391|Al_scaffold_0005_1357
Length=2739
Score = 1653 bits (895), Expect = 0.0
Identities = 1744/2147 (81%), Gaps = 86/2147 (4%)
Strand=Plus/Plus
Query 129 GAAGAACGCGTC-AAGAAATCTCGGCGTGGGATCGATAATC-CGAACATTGAGCGT-TTC 185
|||||| | ||| ||| ||||| |||||||||||||||||| | || |||| || |
Sbjct 156 GAAGAATGTGTCTAAG-AATCTTGGCGTGGGATCGATAATCAGGTCCA-TGAGTGTAAAC 213
Query 186 AAACTGGAGAAAGAGCGGGAATCT-AGGCTCTCCGAGCACAAGGAAAAGTGGAAACCTGG 244
||| |||||||||||||| ||||| ||| | |||||||| ||||| ||||||||| |||
Sbjct 214 AAA-TGGAGAAAGAGCGGTAATCTCGGGC-CCCCGAGCACGAGGAAGAGTGGAAACTTGG 271
Query 245 GGCCTCCGACCAATGCC--GTGCCCAAG----AAGA-CAGGTCCACAAAGAGTGGAGAGG 297
|||||||| | | || |||||||| |||| | || ||||||||||| ||||||
Sbjct 272 GGCCTCCG--C--TCCCTATTGCCCAAGAAAAAAGACCGGGGCCACAAAGAGTCGAGAGG 327
Query 298 ACAACATCAAGCGCGGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACC 357
|| ||||| || |||||||| ||||| || ||| ||||||||||||||||||| |||||
Sbjct 328 ACTACATCTAGTGCGGCTAGAGGACTACAAAGCCTACGGTTCCTTGATCGGACTGTCACA 387
Query 358 GGACGAGAACGAGATGCATGGAGATCGATTGAGAACCGGTTCAATCAGTTCT-CTGTTGA 416
||||| ||||| ||| | |||||||| || ||||||||||||||||| || | | |||||
Sbjct 388 GGACGGGAACGGGATTCGTGGAGATCAATCGAGAACCGGTTCAATCAATT-TGCCGTTGA 446
Query 417 TGGCAAG-TTGCCTAAAGAGAAATTCGGCGTCTGCATTGGAATGGGAGACACAATGGAGT 475
|| | | || || || || |||||||| || ||||||||||||||||| ||| ||||||
Sbjct 447 CGGGAGGCTT-CCCAAGGATAAATTCGGTGTTTGCATTGGAATGGGAGATACATTGGAGT 505
Query 476 TTGCGGCAGAAGTTTATGAAGCATTGGGTCGGAGGAGACAAATAGAGACAGAAAACGGTA 535
||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||| || |
Sbjct 506 TTGCGGCAGAAGTATATGAAGCATTGGGTAGGAGAAGACAAATAAACACAGAAAATGGGA 565
Query 536 TTGACAAAGAACAACTCAAGCTGTTTTGGGAAGACATGATCAAGAAAGACCTCGATTGTC 595
|||| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 566 TTGATAAGGAACAACTCAAGCTTTTTTGGGAAGACATGATCAAGAAAGATCTCGACTGTC 625
Query 596 GTCTTCAGATCTTCTTCGACATGTGTGACAAAAACGGAGATGGTAAGCTGACGGAAGAGG 655
| || |||||||||||||||||||||||||| | ||||| || ||| | || |||||||
Sbjct 626 GCCTCCAGATCTTCTTCGACATGTGTGACAAGGATGGAGACGGGAAGTTAACAGAAGAGG 685
Query 656 AAGTGAAAGAGGTCATAGTATTGAGTGCCTCGGCGAACCGCCTCGGGAATTTAAAAAAGA 715
|||| |||||||||||||| |||||||| || |||||| | |||| ||| |||| ||||
Sbjct 686 AAGTTAAAGAGGTCATAGTCTTGAGTGCATCAGCGAACAGGCTCGCTAATCTAAAGAAGA 745
Query 716 ATGCTGCAGCTTACGCATCTTTGATCATGGAAGAACTCGACCCTGATCATA-AAGGATAC 774
|||||||| |||| || |||||||||||||||||||||||||| || || | | || |||
Sbjct 746 ATGCTGCATCTTATGCTTCTTTGATCATGGAAGAACTCGACCCCGACCA-ACACGGTTAC 804
Query 775 ATAGAGATGTGGCAGTTAGAAATACTACTAACAGGAATGGTGA-CAAACGCTGA-T-AC- 830
|| ||||||||||| | || | || |||||||||| || | |||||||||| | ||
Sbjct 805 ATTGAGATGTGGCAACTCGAGGTGTTATTAACAGGAATTGT-ATCAAACGCTGAGTCACA 863
Query 831 GGAGAAGATGAAGAAATCGCAAAC-GCTGACACGCGCGATGATCCCAGAGCGGTACAGAA 889
|| | ||| |||||||| ||| ||| || || || ||||||||| | || |||||||
Sbjct 864 TAAGGTGGTGAGGAAATCGC-AACAGCTAACGCGAGCCATGATCCCAAAACGTTACAGAA 922
Query 890 CGCCGA-TGAGCAAGTACGTCTCCGTAACCGCGGAACTGATGCACGAGAATTGGAAAAA- 947
| |||| | || || ||||| || |||||||| || || ||| ||||| | ||||||||
Sbjct 923 CACCGACT-AGTAAATACGTTTCAGTAACCGCCGAGCTAATGTACGAGCACTGGAAAAAG 981
Query 948 ATTATGGGTAC-TCGCTTTGTGGGC-CATCA-TCAACGTCTATCTATTCATGTGGAAGTA 1004
||| ||||| | | | |||| ||| | || | |||| | || ||||| ||||| ||
Sbjct 982 ATT-TGGGT-CGTTACATTGT-GGCTC-GCAGTAAACGCCGCCCTCTTCATATGGAAATA 1037
Query 1005 CGAAGAGTTCATGAGAAACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCCGCTAA 1064
||||||||||| | || |||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1038 CGAAGAGTTCACCACAAGCCCTCTTTACAACATCACCGGACGCTGCCTTTGCGCCGCGAA 1097
Query 1065 AGGCGCTGCTGAAACGCTGAAACTCAACATGGCTCTGATTTTGGTCCCAGTCTGT-AGAA 1123
||| |||| |||| || ||||||||||||||| |||| |||||||| || | | ||||
Sbjct 1098 AGGAACTGCGGAAATACTAAAACTCAACATGGCTTTGATCTTGGTCCCTGT-TTTAAGAA 1156
Query 1124 AAACCCTAACGATACTTAGGTCAACGTTCTTGAACCGTGTGGTCCCATTCGACGACAACA 1183
|||||| ||| | || || || || ||||||| || || |||| ||||| || ||||
Sbjct 1157 GAACCCTTACGTTCCTCAGATCGACTTTCTTGAGCCACCTGATCCCGTTCGATGATAACA 1216
Query 1184 TAAACTTCCACAAGGTGATTG-CATATATGATCGC-GTTCCA-GGCTTTGCTCCACACGG 1240
| |||||| | ||| |||| | | | ||| || ||| | | |||||||||||||
Sbjct 1217 TCAACTTCTATAAGTTGATAGCCGT-GGCGATAGCGGTT--ATTTCCTTGCTCCACACGG 1273
Query 1241 CACTTCACAT-CTTCTGTAACTACCCTAGGTTAAGCT-CGTGCTCTTACGACGTGTTCT- 1297
|||| ||||| | | || ||||| |||||| |||| | | ||| || |||| ||| ||
Sbjct 1274 CACTACACATGC-TATGCAACTATCCTAGGCTAAG-TGCTTGCCCTAACGATTTGTACTA 1331
Query 1298 TGACGTACGCGGGTGCTGC-CTTGGGAAAT-ACGCAACCGAGTTACCTAGGTTTAATGTT 1355
||| |||||||| | | |||||| | | |||||||| || ||||| ||||| |
Sbjct 1332 TGA-TTACGCGGGAAAT-CTCTTGGG-GTTCATGCAACCGACCTATTTAGGTCTAATGCT 1388
Query 1356 GACGTCAGTGTCGATCACGGGTGTTTTAATGATTTTCTTCATGGGAT-TCTCGTTTACAC 1414
||| | || ||| |||| || ||| ||||||| |||||||||| | |||| || || |
Sbjct 1389 GACCCCGGTTTCGGTCACAGGAGTTCTAATGATCATCTTCATGGG-TATCTCATTCACGC 1447
Query 1415 TGGCGATGCATTATTTTAGAAGGAACATAGTGAAATTGCCTAAACCGTTTAA-CGTTCTT 1473
| || |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1448 TTGCTATGCATTACTTCAGAAGAAACATAGTGAAATTGCCTAAACCGTTTAACCG-TCTT 1506
Query 1474 GCTGGGTTTAATGCGTTTTGGTATGCTCATCATTTGTTGGTTCTTGCTTATATTCTTCTC 1533
||||| |||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 1507 GCTGGATTTAATTCGTTTTGGTATGCTCATCATTTGCTGGTTATTGCCTATGCTCTTCTT 1566
Query 1534 ATCATCCATGGTTACTA-TCTTATCATCGAGAAGCCTTGGTACCAGAAGACGACATGGAT 1592
||||| ||||||||| | ||||||||||||||||||||||||||| || |||||||||||
Sbjct 1567 ATCATTCATGGTTAC-ATTCTTATCATCGAGAAGCCTTGGTACCAAAAAACGACATGGAT 1625
Query 1593 GTATTTGGCCGTGCCGATGTTGTTCTACGCGAGTGAGAGGCTATTCTCACGTCTCCTTCA 1652
||| ||||| | || ||| |||| |||||||| |||||||| |||||| | ||||
Sbjct 1626 GTACGTGGCCATACCAATGGTGTTGTACGCGAGCGAGAGGCTTTTCTCAAG---AGTTCA 1682
Query 1653 AGAACACAGCCATCGTGTCAACGTTATTAAGGCTATTGTATATTCGGGGAACGTTCTTGC 1712
|||||||| |||||||||| | |||| ||||||||||||||||| || || ||||||||
Sbjct 1683 AGAACACAACCATCGTGTCCATATTATAAAGGCTATTGTATATTCAGGCAATGTTCTTGC 1742
Query 1713 ACTTTATGTTACAAAACCTCCCGGATTCAAATACAAAAGTGGCATGTACATGTTTGTCAA 1772
||| ||| | |||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1743 ACTCTATATGACAAAACCTCAAGGGTTCAAGTACAAAAGTGGCATGTACATGTTTGTCAA 1802
Query 1773 GTGTCCAGATCTCTCAAAATTTGAATGGCATCCATTCTCCATCACTTCTGCACCAGGAGA 1832
|||||| ||| |||| ||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 1803 GTGTCCTGATATCTCCAAATTCGAATGGCATCCATTCTCCGTCACTTCTGCACCCGGAGA 1862
Query 1833 TGACTATTTAAGTGTTCACATTAGAGCCTTAGGAGATTGGACCACTGAACTTAGGAGCAG 1892
||| ||||| || |||||||| ||||| ||||||||||||||| |||||||||||| |||
Sbjct 1863 TGAATATTTGAGCGTTCACATAAGAGCATTAGGAGATTGGACCTCTGAACTTAGGAACAG 1922
Query 1893 ATTTGCAAAGACATGCGAGCCT-ACTCAAGCAGCCGCTAAACCTAAACCAAACAGTCTTA 1951
||||||| ||||||| |||||| | |||| || | | ||||||| ||||| |||||||
Sbjct 1923 ATTTGCAGAGACATGTGAGCCTCA-TCAAACATC-G--AAACCTAGTCCAAATAGTCTTA 1978
Query 1952 TGAGGATGGAAACAAGAGCTGCG-GGTGTGAATCCTCACATTGAAGAATCACAAGTCTTG 2010
| ||||||||||||||||| | | |||| ||||||||| ||||||||||||||| |||
Sbjct 1979 TTAGGATGGAAACAAGAGC-GAGAGGTGCAAATCCTCACGTTGAAGAATCACAAGCCTTA 2037
Query 2011 TTCCCAAAAATATTCATCAAAGGACCGTATGGAGCTCCGGCACAAAATTATCAGAAGT-T 2069
|| |||| ||| || ||||||||||| || ||||||||||||||||| |||||||||| |
Sbjct 2038 TTTCCAAGAATTTTTATCAAAGGACCATACGGAGCTCCGGCACAAAACTATCAGAAGTAT 2097
Query 2070 CGACATCCTCTTACT-AGTTGGGCTAGGGATTGGGGCAACTCCATTCATAAGCATTTTGA 2128
|| ||||| || | | ||||||||||||| |||||||| ||||| ||||| || | |
Sbjct 2098 -GATATCCTTTTGTTGA-TTGGGCTAGGGATAGGGGCAACCCCATTTATAAGTATCCTAA 2155
Query 2129 AGGACATGTTAAACCATCTGAAACCCGGAATTCCCAGAAGT-GGGCAAAAGTACGAAGGA 2187
| |||||||| ||| |||| ||||| || ||||| ||| | ||||||||||| ||||||
Sbjct 2156 AAGACATGTTGAACAATCTCAAACCTGGTATTCCAAGA-GCCGGGCAAAAGTATGAAGGA 2214
Query 2188 AGTGTAGGAGGAGAGAG-TATAGGAGG-TGATAGTGTTAGTGGTGGA 2232
||||||||||| ||||| | ||||||| | | ||||| | ||| |||
Sbjct 2215 AGTGTAGGAGGTGAGAGCT-TAGGAGGATCA-AGTGTAAATGGAGGA 2259
Score = 523 bits (283), Expect = 2e-147
Identities = 382/431 (89%), Gaps = 2/431 (0%)
Strand=Plus/Plus
Query 2228 GTGGAGGAGGCAAGAAGTTTCCTCAAAGAGCATAttttttttGGGTGACAAGAGAACAAG 2287
|||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 2306 GTGGAGGAGGTAGGAAGTTTCCACAAAGAGCATATTTTTACTGGGTGACAAGAGAACAAG 2365
Query 2288 CTTCCTTT-GATTGGTTCAAGGGAGTTATGGATGACATCGCAGAGTATGATAAAACCCAT 2346
||| |||| || |||||||| |||||||||||||| || |||| |||||| |||||| ||
Sbjct 2366 CTT-CTTTCGAATGGTTCAAAGGAGTTATGGATGATATTGCAGTGTATGACAAAACCAAT 2424
Query 2347 GTAATAGAAATGCATAACTACTTAACAAGCATGTACGAAGCTGGAGATGCAAGATCTGCC 2406
|| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2425 GTGATAGAGATGCATAACTACTTAACAAGTATGTACGAAGCAGGAGATGCAAGATCTGCT 2484
Query 2407 CTTATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTCTCCGAA 2466
|| || || ||||| |||||||||||||||||||| || |||||||| ||||| |||||
Sbjct 2485 CTAATTGCTATGGTCCAGAAACTTCAACATGCCAAAAATGGTGTTGACATTGTGTCCGAG 2544
Query 2467 AGCCGGATACGAACACATTTTGCAAGACCTAATTGGAGGAAGGTTTTTTCTGAATTGTCA 2526
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2545 AGCCGAATACGAACCCATTTCGCAAGACCTAATTGGAGGAAGGTTTTTTCTGAATTGTCA 2604
Query 2527 AGCAAACACGAAGCTTGTCGAATAGGTGTATTCTACTGTGGAAGTCCAACACTGGTTCGA 2586
||||| |||||| ||| ||| |||||||| |||||||||||||||||||| || ||||||
Sbjct 2605 AGCAAGCACGAAACTTCTCGCATAGGTGTGTTCTACTGTGGAAGTCCAACGCTTGTTCGA 2664
Query 2587 CCACTTAAAGAACTCTGTCAGGAGTTTAGTCTCGAGTCATCCACTCGTTTTACTTTCCAC 2646
||||| ||| || ||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 2665 CCACTAAAATCCCTTTGTCAGGAGTTCAGTCTCGAGTCGTCCACCCGCTTTACTTTCCAC 2724
Query 2647 AAGGAAAATTT 2657
|| || |||||
Sbjct 2725 AAAGAGAATTT 2735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100367795575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5