BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60030.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496141 jgi|Araly1|496141|fgenesh2_kg.8__1957__AT5G60030.1 651 0.0
> Ahg496141 jgi|Araly1|496141|fgenesh2_kg.8__1957__AT5G60030.1
Length=822
Score = 651 bits (352), Expect = 0.0
Identities = 609/722 (84%), Gaps = 61/722 (8%)
Strand=Plus/Plus
Query 1 TTCGAGCTTCTTCCGATGAAGACTGTCACCGGAAGAGTTGTTAGTGCTGAACCAATCTCC 60
|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCGAGCTTCGTCCGATGAAGACAGTCACCGGAAGAGTTATTAGTGCTGAACCAATCTCC 60
Query 61 CTCTCAAAGGCGGCTAAGCTTCTCTCTGGATTCGCTTCCTCTGATAATGGCGCCTCTCAA 120
|| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTTTCCAAGGCGGCTACGCTTCTCTCTGGATTCGCTTCCTCCGATAATGGCGCCTCTCAA 120
Query 121 GACGTTAGTGCGTACCTCCGGCGAGCCTCCGCTGCCTTCACTGAATTAAAGAGTTTCCAC 180
|||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct 121 GACGTTAGTGCGTACCTCCGACGAGCCTCCGCCGCCTTCACCGAATTGAAGAGTTTCCAC 180
Query 181 AGGGAGATTAAATCAAAGGA-GACGAAGCCAAGCTCCGAT-AGGGAGACTAAATCAACGG 238
|||||||||||||||||||| | ||||||||||||||| | |||||| |||||||| ||
Sbjct 181 AGGGAGATTAAATCAAAGGATG-CGAAGCCAAGCTCCG-TCAGGGAGGTTAAATCAAAGG 238
Query 239 AGACGAAGCAAAGCTCCGATGCAAAGAGTGAGCGGAATGTCATTGACGAATTCGACGGTC 298
||||||||| ||||||||| |||| | |||||||| |||||| || |||||| |||||
Sbjct 239 AGACGAAGCCAAGCTCCGACGCAAGGCGTGAGCGGGATGTCACTGGCGAATTAGACGGA- 297
Query 299 G-GAAGATTCGTTACCGGAATAGTGAAGCTGTGAGTGTGGAATCAGTTTATGGTAGGGAA 357
| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 298 GAGAAGATTCGTTACCGGAAAAGTGGAGCTGTGAGTGAGGAATCAGTTTATGGTAGGGAT 357
Query 358 C-GTGATGAGA--AAAA-GATGAAGA--A-GAGCAA-AG-A-C---G-C-A-GATGTTGT 401
| | ||||||| |||| || ||||| | |||||| | | | | | | ||||||||
Sbjct 358 CAG-GATGAGATGAAAAAGAAGAAGAGCAAGAGCAAGAATAACAAAGACGAAGATGTTGT 416
Query 402 TGATGAGAAGGTgaacgagaagttggaagca-gagcaaaggagcgaagagcgaagggaga 460
|| |||| ||||||| |||||| |||||| | ||||||||||| | || | | |||
Sbjct 417 TGGTGAGGAGGTGAAGGAGAAGCTGGAAG-ATGAGCAAAGGAG--A-GA---A-G--AGA 466
Query 461 gaaagaaggagaagaagaagaagaagaacaacaaagacgaagatgttgttgatgagaagg 520
|||||||||||||||||||||| ||| | | | ||||||||||||||||||||||
Sbjct 467 GAAAGAAGGAGAAGAAGAAGAA------CAA-AGA-A-GAAGATGTTGTTGATGAGAAGG 517
Query 521 tgaaggagaagttagaagacgagcaaaagagcgcagatagaaaggagcgaaagaag-a-a 578
||||||||||||| |||||| |||||| ||||| ||| ||||||||| |||||||| | |
Sbjct 518 TGAAGGAGAAGTTGGAAGACAAGCAAAGGAGCGAAGAGAGAAAGGAGAGAAAGAAGGAGA 577
Query 579 -gaagagcaagaagaacaacgac---ga-a--gatgttgttgatgagaagg--a-g-a-a 626
||||||||||| |||||| ||| || | || |||||||||||||||| | | | |
Sbjct 578 AGAAGAGCAAGAGGAACAAAGACAAAGAGAAAGAGGTTGTTGATGAGAAGGTGAAGGAGA 637
Query 627 -gttagaa-gacgagcaaaagagcgcagagataaaggagaaaaagaagaacaaagacgaa 684
||| ||| |||||||||| ||| | ||||| |||| || | |||||||| || || |||
Sbjct 638 AGTT-GAAAGACGAGCAAAGGAGTGAAGAGAGAAAGAAGGAGAAGAAGAAGAA-GAGGAA 695
Query 685 ga 686
||
Sbjct 696 GA 697
Score = 67.6 bits (36), Expect = 1e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 180 CAGGGAGATTAAATCAAAGGAGACGAAGCCAAGCTCCGA 218
||||||| |||||||||||||||||||||||||||||||
Sbjct 219 CAGGGAGGTTAAATCAAAGGAGACGAAGCCAAGCTCCGA 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5