BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60060.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497231 jgi|Araly1|497231|fgenesh2_kg.71__1__AT5G60060.1 1543 0.0
Ahg496144 jgi|Araly1|496144|fgenesh2_kg.8__1960__AT5G60060.1 1543 0.0
> Ahg497231 jgi|Araly1|497231|fgenesh2_kg.71__1__AT5G60060.1
Length=1125
Score = 1543 bits (835), Expect = 0.0
Identities = 1036/1129 (92%), Gaps = 29/1129 (3%)
Strand=Plus/Plus
Query 17 ttcttccttctCAATGGTCTGATCTTCCTTTAGATATTCTTGAGTTGATCTCCGATCGTC 76
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 6 TTCTT-CTTCTCAATGGTCTGATCTTCCTTTAGATATGCTTGAGTTAATCTCCGATCGTC 64
Query 77 TTGAC--C-ACGACTCATCAGACACCATTCATCTCCTCTGTCTCCGCTCTGTATGTGCCA 133
||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 65 TTGACGACGACGACTCATCAGACACCATTGATCTCCTCTGTCTCCGCTCTGTATGTGCCA 124
Query 134 CTTGGCGTCTCTCTCTTCCTCTCTCCAAC-A-AA-AAC---AA-CCGTTTGTCTAAATTC 186
||||||||||||||||||||||||||||| | || ||| || || |||||||||||||
Sbjct 125 CTTGGCGTCTCTCTCTTCCTCTCTCCAACAACAACAACAAAAATCC-TTTGTCTAAATTC 183
Query 187 CCAAAGTATCTTCCTTTTTGGTCATCTTCTTCTTCATCCTCTGGTTTCTTCACTCTGAAA 246
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 184 CCAAAGTATCTTCCTTTTTGGTCATCATCTTCTTCATCCTCTGGTTTCTTCATTCTGAAA 243
Query 247 CAAAGCAATGTCTATAAACTTGAAGCTCCTTTGAATCCGAGAA-CTTGTCTGGTTAAGCT 305
|| |||| ||||||| |||| |||||||||||||||||||||| || || |||||||| |
Sbjct 244 CAGAGCAGTGTCTATGAACTCGAAGCTCCTTTGAATCCGAGAAGCTGGT-TGGTTAAGAT 302
Query 306 TCAAGAGACAACTCCAGGGATTATGCGAGTCTTGGATCTATTCTCAAACGACAGAATCTG 365
|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TCAAGAGACATCTCCAGGGAATATGCGAGTCTTGGATCTCTTCTCAAACGACAGAATCTG 362
Query 366 TTTCTTACCTGAGAATTTCCCGTCAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 425
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 TTTCTTACCAGAGAATTTCCCGGAAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 422
Query 426 TCGTAGAACTTATCGTATGGAGTACGCAAACAATGGTGGTGGTGCAGTGCCTTGTTTCTG 485
||||||||||||||||||||| |||||||||||||||||| | | | | ||||||||||
Sbjct 423 TCGTAGAACTTATCGTATGGACTACGCAAACAATGGTGGT-GAG-A-TTTCTTGTTTCTG 479
Query 486 GTCTCTGCATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCGGCGATAATTGC 545
|||| | |||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 480 GTCTTTAAATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCAGCGATAGTGGC 539
Query 546 GATTCACAGTGGTGGGAAATTAGGGTTTTTGAAGAGTGGAAACGATGAAAA-ATGGAAAA 604
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||
Sbjct 540 TATTCACAGTGGTGGGAAATTAGGGCTTTTGAAGAGTGGAAACGA-AAAAAGATGGAGAA 598
Query 605 TTTTGGATAATTCATGGAATGTGATTTACGAGGACATAATGTTATACAAAGACAATCGTT 664
||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| |||
Sbjct 599 TTTTGGATAATTCATGGAATGTGATTTACGAAGACATAATGTTGTACAGAGAGAATTGTT 658
Query 665 GCATCGTTGTAGATGATAAGGGCAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 724
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GCATCGTTGTAGACGATAAGGGTAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 718
Query 725 ATTTGGCTGAAGGTTTGGTCGGAGGAGGAGGTCACAAGAAACATCTAGTGGAATGTTCCG 784
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| | |||
Sbjct 719 ATTTGGCTGAAGGTTTGGTCGGAGGAGGCGGTCACAAGAAGCATCTTGTGGAATATCCCG 778
Query 785 GCGGAGAAGTGTTTCTTGTGGACAAATACGTGAAA-ACCGTTTGGTGCAAATCGGATATT 843
||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 779 GCGGAGAAGTGTTGCTTGTTGACAAATACGTGAAACAC-GTTTGGTGCAAATCGGAGGTT 837
Query 844 TCGAAATCTGTGGTTGAGTTTAGAGTTTATAATCTgaagagagaagagaagagatgggaa 903
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 TCGAAATCTGCGGTTGAGTTTAGAGTTTATAAGCTGAAGAGAGAAGAGAAGAGATGGGAA 897
Query 904 gaagtgagagaCTTAGGAGATGTTGCTCTGTTTATTGGAGATGACTGTTCTTTCTCCGTT 963
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 898 GAAGTGAGAGAATTAGGAGATGTGGCTCTCTTTATTGGAGATGACTGTTCTTTCTCCGTT 957
Query 964 CAGAATCCGGCCGGAGATTTAGCCGGAGGTTTCATATTCTATAGTGATTATAGGAATGGA 1023
|||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 958 CAGATTCCGGCCGGAGATTCGGCCGGAGGTTTTATATTCTATAGAGATTATAGGAATGGA 1017
Query 1024 GGAAGAAGCAGAGG-GATTTGCAGCGACGGTGATGGTGTCTTCAACGTGGA-T---A--T 1076
|||||||||||||| | ||||||| |||||||||||||||||||| ||||| | | |
Sbjct 1018 GGAAGAAGCAGAGGTG-TTTGCAGTGACGGTGATGGTGTCTTCAATGTGGAATTTGAGAT 1076
Query 1077 GCAGGGTGATTTTGTGTTTTCTATAAAGCCCAATTATTTTGGCCCATAA 1125
|||| |||||||||| ||| ||||||||||||| | |||||||||||||
Sbjct 1077 GCAGAGTGATTTTGTATTTCCTATAAAGCCCAAATGTTTTGGCCCATAA 1125
> Ahg496144 jgi|Araly1|496144|fgenesh2_kg.8__1960__AT5G60060.1
Length=1125
Score = 1543 bits (835), Expect = 0.0
Identities = 1036/1129 (92%), Gaps = 29/1129 (3%)
Strand=Plus/Plus
Query 17 ttcttccttctCAATGGTCTGATCTTCCTTTAGATATTCTTGAGTTGATCTCCGATCGTC 76
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 6 TTCTT-CTTCTCAATGGTCTGATCTTCCTTTAGATATGCTTGAGTTAATCTCCGATCGTC 64
Query 77 TTGAC--C-ACGACTCATCAGACACCATTCATCTCCTCTGTCTCCGCTCTGTATGTGCCA 133
||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 65 TTGACGACGACGACTCATCAGACACCATTGATCTCCTCTGTCTCCGCTCTGTATGTGCCA 124
Query 134 CTTGGCGTCTCTCTCTTCCTCTCTCCAAC-A-AA-AAC---AA-CCGTTTGTCTAAATTC 186
||||||||||||||||||||||||||||| | || ||| || || |||||||||||||
Sbjct 125 CTTGGCGTCTCTCTCTTCCTCTCTCCAACAACAACAACAAAAATCC-TTTGTCTAAATTC 183
Query 187 CCAAAGTATCTTCCTTTTTGGTCATCTTCTTCTTCATCCTCTGGTTTCTTCACTCTGAAA 246
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 184 CCAAAGTATCTTCCTTTTTGGTCATCATCTTCTTCATCCTCTGGTTTCTTCATTCTGAAA 243
Query 247 CAAAGCAATGTCTATAAACTTGAAGCTCCTTTGAATCCGAGAA-CTTGTCTGGTTAAGCT 305
|| |||| ||||||| |||| |||||||||||||||||||||| || || |||||||| |
Sbjct 244 CAGAGCAGTGTCTATGAACTCGAAGCTCCTTTGAATCCGAGAAGCTGGT-TGGTTAAGAT 302
Query 306 TCAAGAGACAACTCCAGGGATTATGCGAGTCTTGGATCTATTCTCAAACGACAGAATCTG 365
|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TCAAGAGACATCTCCAGGGAATATGCGAGTCTTGGATCTCTTCTCAAACGACAGAATCTG 362
Query 366 TTTCTTACCTGAGAATTTCCCGTCAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 425
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 TTTCTTACCAGAGAATTTCCCGGAAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 422
Query 426 TCGTAGAACTTATCGTATGGAGTACGCAAACAATGGTGGTGGTGCAGTGCCTTGTTTCTG 485
||||||||||||||||||||| |||||||||||||||||| | | | | ||||||||||
Sbjct 423 TCGTAGAACTTATCGTATGGACTACGCAAACAATGGTGGT-GAG-A-TTTCTTGTTTCTG 479
Query 486 GTCTCTGCATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCGGCGATAATTGC 545
|||| | |||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 480 GTCTTTAAATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCAGCGATAGTGGC 539
Query 546 GATTCACAGTGGTGGGAAATTAGGGTTTTTGAAGAGTGGAAACGATGAAAA-ATGGAAAA 604
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||
Sbjct 540 TATTCACAGTGGTGGGAAATTAGGGCTTTTGAAGAGTGGAAACGA-AAAAAGATGGAGAA 598
Query 605 TTTTGGATAATTCATGGAATGTGATTTACGAGGACATAATGTTATACAAAGACAATCGTT 664
||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| |||
Sbjct 599 TTTTGGATAATTCATGGAATGTGATTTACGAAGACATAATGTTGTACAGAGAGAATTGTT 658
Query 665 GCATCGTTGTAGATGATAAGGGCAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 724
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GCATCGTTGTAGACGATAAGGGTAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 718
Query 725 ATTTGGCTGAAGGTTTGGTCGGAGGAGGAGGTCACAAGAAACATCTAGTGGAATGTTCCG 784
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| | |||
Sbjct 719 ATTTGGCTGAAGGTTTGGTCGGAGGAGGCGGTCACAAGAAGCATCTTGTGGAATATCCCG 778
Query 785 GCGGAGAAGTGTTTCTTGTGGACAAATACGTGAAA-ACCGTTTGGTGCAAATCGGATATT 843
||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 779 GCGGAGAAGTGTTGCTTGTTGACAAATACGTGAAACAC-GTTTGGTGCAAATCGGAGGTT 837
Query 844 TCGAAATCTGTGGTTGAGTTTAGAGTTTATAATCTgaagagagaagagaagagatgggaa 903
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 TCGAAATCTGCGGTTGAGTTTAGAGTTTATAAGCTGAAGAGAGAAGAGAAGAGATGGGAA 897
Query 904 gaagtgagagaCTTAGGAGATGTTGCTCTGTTTATTGGAGATGACTGTTCTTTCTCCGTT 963
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 898 GAAGTGAGAGAATTAGGAGATGTGGCTCTCTTTATTGGAGATGACTGTTCTTTCTCCGTT 957
Query 964 CAGAATCCGGCCGGAGATTTAGCCGGAGGTTTCATATTCTATAGTGATTATAGGAATGGA 1023
|||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 958 CAGATTCCGGCCGGAGATTCGGCCGGAGGTTTTATATTCTATAGAGATTATAGGAATGGA 1017
Query 1024 GGAAGAAGCAGAGG-GATTTGCAGCGACGGTGATGGTGTCTTCAACGTGGA-T---A--T 1076
|||||||||||||| | ||||||| |||||||||||||||||||| ||||| | | |
Sbjct 1018 GGAAGAAGCAGAGGTG-TTTGCAGTGACGGTGATGGTGTCTTCAATGTGGAATTTGAGAT 1076
Query 1077 GCAGGGTGATTTTGTGTTTTCTATAAAGCCCAATTATTTTGGCCCATAA 1125
|||| |||||||||| ||| ||||||||||||| | |||||||||||||
Sbjct 1077 GCAGAGTGATTTTGTATTTCCTATAAAGCCCAAATGTTTTGGCCCATAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5