BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60080.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497233 jgi|Araly1|497233|fgenesh2_kg.71__3__AT5G60080.1 1410 0.0
Ahg496146 jgi|Araly1|496146|fgenesh2_kg.8__1962__AT5G60080.1 1410 0.0
Ahg918662 jgi|Araly1|918662|Al_scaffold_0071_4 283 2e-75
Ahg489695 jgi|Araly1|489695|fgenesh2_kg.6__2829__AT5G60090.1 226 3e-58
> Ahg497233 jgi|Araly1|497233|fgenesh2_kg.71__3__AT5G60080.1
Length=1155
Score = 1410 bits (763), Expect = 0.0
Identities = 1032/1159 (89%), Gaps = 29/1159 (3%)
Strand=Plus/Plus
Query 1 ATGAGTAATCGTTTCTTATGCTGTTTAGGAGGCGGAGGCTCAAGTAAAGTAATGCAAGAT 60
||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGAGTAATCGTTTCATATGCTGTTTCGGAGGCGGAAGCTCAAGTAAAGTAGTGCAAGAT 60
Query 61 CCATCGGAACTACCGC-A-A-C-A--ACAACAACCATCGGATTCGTCGGATTCATCGGAT 114
|||||||||||||||| | | | | |||| || || ||||| | ||||||||||| |||
Sbjct 61 CCATCGGAACTACCGCAACAGCAACCACAAGAATCACCGGATCCATCGGATTCATCCGAT 120
Query 115 ACACCGGGACAA-CAAAGT--GAA--G--GTGA-C--GACGAA--GCTGACGACGAAGAT 162
||| ||| |||| |||| | || | | | | | ||| | ||||||||||| |
Sbjct 121 ACATCGGAACAACCAAATTCACAACCGCATTCATCGGGGGGAAGTGGTGACGACGAAGCT 180
Query 163 CCGAGTTCTATAGTTAAATTTCGATGGAATGATGTCGTAGAGGGAACCGATAACTTCGCG 222
|||||| | |||||||||||||||| ||| ||| ||| |||||||| ||||||| |
Sbjct 181 CCGAGTACGGGAGTTAAATTTCGATGGCGTGAAATCGAAGACGGAACCGAAAACTTCGGG 240
Query 223 ATAACACATTTGATCGGCCAAGG-AACCTACGGCAAAGTCTATCGCTGCAAGTTCCC-AG 280
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||
Sbjct 241 ATAACACATTTGATCGGCCAAGGCAA-CTACGGCAAAGTCTATCGCTGCAATTTCCCAAG 299
Query 281 AAGGTCACAAGGTTGGAGCTGCAAAGATTCATAGTAATGGTATCACAGATGGTCTTAGTG 340
|| ||| ||||||||||||||||||||||||| |||| |||||||| || ||||||||
Sbjct 300 AA-TTCATAAGGTTGGAGCTGCAAAGATTCATAATAATAATATCACAGCTGCTCTTAGTG 358
Query 341 AGACCGTAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTG 400
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGTTCATAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTC 418
Query 401 TCGGCAAATATTATGGGATGGAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 460
| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGCAAATATTTTGGCATACAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 478
Query 461 CTCTTGACCACCATCTCTTTGCTCACGCGAGGCAGGTTCAGGGTCTTACTCTGCCAACTA 520
||||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 479 CTCTTGACCACCATCTCTTTGCTCAAGCAAGGCAGGTTCAGGGTCTAACGAAGCCAACTC 538
Query 521 GGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTTGGTGTAGCCGAAGGTCTTGTTT 580
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 539 GGGTTTTGGATTGGAACACAAGGATGAGAATTGCTGTGGGTGTAGCCGAAGGTCTGGTTT 598
Query 581 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCGAAAACATTTTACTTG 640
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 599 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATGTCAAAGTCGAAAACATCTTACTTG 658
Query 641 ACAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGACTAAGATCGTTTACAATA 700
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 659 ACAATAATTTTGTGCCGAAGTTGAGTGATTTTGGATTTGCGACTAAGATCGTTTACAATT 718
Query 701 GTGATGGTGTTGAGAGGCTGAGGGAGTTCAATACGCGTGGAACTCAAGGATACATAGCAC 760
| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 719 CAAACGGTGTTGAGAGGCAGAGGGAGTTCAATTCGAGTGGAACTCAAGGATACATAGCAC 778
Query 761 CGGAAGCAGATGAGTTCGCGTTGGTTTCGACTAAGTCCGATATCTATAGCTATGGAGTTC 820
|||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 779 CGGAAGCAGAGGAGTTCGGGTTGATTTCGACAAAGTCCGATATCTATAGCTATGGAGTTT 838
Query 821 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCCTATGATCTGGCGAGACCTGTTGCGAAAG 880
||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 839 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCTTATGATATGAAGAGACCTGTTGCGAAAG 898
Query 881 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGATTGGAGTATGCGCCTATGATAG 940
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 899 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGACTGGAGTATGCGCCTATGGTAG 958
Query 941 TTGATGTTGCGCTCGGTAATAAGTATTCAATTGAAGGTTTAAACAGACTACTTCAAACTG 1000
|||||||||| ||||||||||||||||| |||||||||||||| | ||| |||||||||
Sbjct 959 TTGATGTTGCCCTCGGTAATAAGTATTCGGTTGAAGGTTTAAACCGCCTATTTCAAACTG 1018
Query 1001 CGAGGATGTGTATAAACCCACAGGCACTTGAACGGCCTGCCATGGATTTTGTGGAAACGA 1060
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CGAGGATGTGTATAAACGCACAGGCACTTGAACGGCCTGCGATGGATTTTGTGGAAACGA 1078
Query 1061 TGGTTCGTGAAGCTGCAGCTTTCCCGGT-C-CCAA-AGGAG-CCCCTGGTGAAAGAGAGG 1116
||||||||||||||||||||||||| || | || | ||||| |||||| ||| ||||||
Sbjct 1079 TGGTTCGTGAAGCTGCAGCTTTCCCAGTACTCCCAGAGGAGACCCCTG-TGACCGAGAGG 1137
Query 1117 AT-TTCGACTTCGAAATAA 1134
| ||||||||||| ||||
Sbjct 1138 -TGTTCGACTTCGACATAA 1155
> Ahg496146 jgi|Araly1|496146|fgenesh2_kg.8__1962__AT5G60080.1
Length=1155
Score = 1410 bits (763), Expect = 0.0
Identities = 1032/1159 (89%), Gaps = 29/1159 (3%)
Strand=Plus/Plus
Query 1 ATGAGTAATCGTTTCTTATGCTGTTTAGGAGGCGGAGGCTCAAGTAAAGTAATGCAAGAT 60
||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGAGTAATCGTTTCATATGCTGTTTCGGAGGCGGAAGCTCAAGTAAAGTAGTGCAAGAT 60
Query 61 CCATCGGAACTACCGC-A-A-C-A--ACAACAACCATCGGATTCGTCGGATTCATCGGAT 114
|||||||||||||||| | | | | |||| || || ||||| | ||||||||||| |||
Sbjct 61 CCATCGGAACTACCGCAACAGCAACCACAAGAATCACCGGATCCATCGGATTCATCCGAT 120
Query 115 ACACCGGGACAA-CAAAGT--GAA--G--GTGA-C--GACGAA--GCTGACGACGAAGAT 162
||| ||| |||| |||| | || | | | | | ||| | ||||||||||| |
Sbjct 121 ACATCGGAACAACCAAATTCACAACCGCATTCATCGGGGGGAAGTGGTGACGACGAAGCT 180
Query 163 CCGAGTTCTATAGTTAAATTTCGATGGAATGATGTCGTAGAGGGAACCGATAACTTCGCG 222
|||||| | |||||||||||||||| ||| ||| ||| |||||||| ||||||| |
Sbjct 181 CCGAGTACGGGAGTTAAATTTCGATGGCGTGAAATCGAAGACGGAACCGAAAACTTCGGG 240
Query 223 ATAACACATTTGATCGGCCAAGG-AACCTACGGCAAAGTCTATCGCTGCAAGTTCCC-AG 280
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||
Sbjct 241 ATAACACATTTGATCGGCCAAGGCAA-CTACGGCAAAGTCTATCGCTGCAATTTCCCAAG 299
Query 281 AAGGTCACAAGGTTGGAGCTGCAAAGATTCATAGTAATGGTATCACAGATGGTCTTAGTG 340
|| ||| ||||||||||||||||||||||||| |||| |||||||| || ||||||||
Sbjct 300 AA-TTCATAAGGTTGGAGCTGCAAAGATTCATAATAATAATATCACAGCTGCTCTTAGTG 358
Query 341 AGACCGTAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTG 400
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGTTCATAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTC 418
Query 401 TCGGCAAATATTATGGGATGGAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 460
| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGCAAATATTTTGGCATACAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 478
Query 461 CTCTTGACCACCATCTCTTTGCTCACGCGAGGCAGGTTCAGGGTCTTACTCTGCCAACTA 520
||||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 479 CTCTTGACCACCATCTCTTTGCTCAAGCAAGGCAGGTTCAGGGTCTAACGAAGCCAACTC 538
Query 521 GGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTTGGTGTAGCCGAAGGTCTTGTTT 580
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 539 GGGTTTTGGATTGGAACACAAGGATGAGAATTGCTGTGGGTGTAGCCGAAGGTCTGGTTT 598
Query 581 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCGAAAACATTTTACTTG 640
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 599 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATGTCAAAGTCGAAAACATCTTACTTG 658
Query 641 ACAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGACTAAGATCGTTTACAATA 700
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 659 ACAATAATTTTGTGCCGAAGTTGAGTGATTTTGGATTTGCGACTAAGATCGTTTACAATT 718
Query 701 GTGATGGTGTTGAGAGGCTGAGGGAGTTCAATACGCGTGGAACTCAAGGATACATAGCAC 760
| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 719 CAAACGGTGTTGAGAGGCAGAGGGAGTTCAATTCGAGTGGAACTCAAGGATACATAGCAC 778
Query 761 CGGAAGCAGATGAGTTCGCGTTGGTTTCGACTAAGTCCGATATCTATAGCTATGGAGTTC 820
|||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 779 CGGAAGCAGAGGAGTTCGGGTTGATTTCGACAAAGTCCGATATCTATAGCTATGGAGTTT 838
Query 821 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCCTATGATCTGGCGAGACCTGTTGCGAAAG 880
||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 839 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCTTATGATATGAAGAGACCTGTTGCGAAAG 898
Query 881 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGATTGGAGTATGCGCCTATGATAG 940
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 899 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGACTGGAGTATGCGCCTATGGTAG 958
Query 941 TTGATGTTGCGCTCGGTAATAAGTATTCAATTGAAGGTTTAAACAGACTACTTCAAACTG 1000
|||||||||| ||||||||||||||||| |||||||||||||| | ||| |||||||||
Sbjct 959 TTGATGTTGCCCTCGGTAATAAGTATTCGGTTGAAGGTTTAAACCGCCTATTTCAAACTG 1018
Query 1001 CGAGGATGTGTATAAACCCACAGGCACTTGAACGGCCTGCCATGGATTTTGTGGAAACGA 1060
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CGAGGATGTGTATAAACGCACAGGCACTTGAACGGCCTGCGATGGATTTTGTGGAAACGA 1078
Query 1061 TGGTTCGTGAAGCTGCAGCTTTCCCGGT-C-CCAA-AGGAG-CCCCTGGTGAAAGAGAGG 1116
||||||||||||||||||||||||| || | || | ||||| |||||| ||| ||||||
Sbjct 1079 TGGTTCGTGAAGCTGCAGCTTTCCCAGTACTCCCAGAGGAGACCCCTG-TGACCGAGAGG 1137
Query 1117 AT-TTCGACTTCGAAATAA 1134
| ||||||||||| ||||
Sbjct 1138 -TGTTCGACTTCGACATAA 1155
> Ahg918662 jgi|Araly1|918662|Al_scaffold_0071_4
Length=1095
Score = 283 bits (153), Expect = 2e-75
Identities = 415/535 (78%), Gaps = 43/535 (8%)
Strand=Plus/Plus
Query 349 GCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTGTCGGCAAA 408
|||||| |||||||||| |||||||| |||||||||||||||||| |||| | ||| |
Sbjct 394 GCAGAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCAT 453
Query 409 TATTATGG--GATGGAAAAAAGTGTC-CTAGTCTACGAATTCATGCCTAATGGCTCTCTT 465
| ||| || | || || ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 454 TGTTACGGCCAAAGG--AACCGTG-CTATAGTCTACGAATTCATGCCCAATGGCTGTCTT 510
Query 466 GACCACCATC-TCTTTGCTCACG---CGA--G-GCA--G---G--T--TCAGGGTCTTAC 509
|| | || | ||||||| |||| ||| | ||| | | | |||||||| |||
Sbjct 511 GAGCGTCA-CATCTTTGCACACGCAACGAGGGTGCAGGGTCCGTTTCCTCAGGGTC-TAC 568
Query 510 -TCTGCCAACTAGGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTT-GGTGTAGCC 567
|| |||| |||||||||||||||| | |||||| ||||||||||| || |||||||||
Sbjct 569 AACTACCAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCT-TTGGGTGTAGCC 627
Query 568 GAA-GGTCTTGTTTATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCGA 626
|| ||||| |||||| ||||||||| ||| | | |||| || ||||| |||| | ||
Sbjct 628 -AAGGGTCTGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAGGCCGG 686
Query 627 AAACATTTTACTTGA--CAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGACT 684
||| ||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 687 AAATATTCTACTTGATGCAA--ATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGACT 744
Query 685 AAGATCGTT-TACAATAGTGAT-GGTGTTGAGAGGCTGAGGGAGTTCAATACGC-GT-GG 740
|| |||| | || | | | | |||||||||| || || | ||||| || | ||
Sbjct 745 AAAATCGATGTAGA-T-GAAAACGGTGTTGAGAAGCAGATCCTGATCAATCCGATGAAGG 802
Query 741 AA-CTCAAGGATACATAGCACCGGAAGCAGATGAGTTC-GCGTTGGTTTCGACTAAGTCC 798
| || |||||||| |||||||||| ||| || ||| | ||| |||||||||||| |
Sbjct 803 GATCTTTGGGATACATTGCACCGGAAGGAGA-GATTTCCGGGTTTGTTTCGACTAAGACT 861
Query 799 GATATCTATAGCTATGGAGTTCTTCTGTTAGTGCTTTTAACTGGAAGGAAAGCCT 853
||| ||||||||||||||| ||||||| |||||||||| || |||||| | ||||
Sbjct 862 GATGTCTATAGCTATGGAGCTCTTCTGGTAGTGCTTTTCACCGGAAGGGA-GCCT 915
> Ahg489695 jgi|Araly1|489695|fgenesh2_kg.6__2829__AT5G60090.1
Length=1149
Score = 226 bits (122), Expect = 3e-58
Identities = 292/368 (79%), Gaps = 35/368 (10%)
Strand=Plus/Plus
Query 349 GCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTGTCGGCAAA 408
|||||| |||||||||| |||||||| |||||||||||||||||| |||| | |||||
Sbjct 355 GCAGAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCAAT 414
Query 409 TATTATGG--GATGGAAAAAAGTGTC-CTAGTCTACGAATTCATGCCTAATGGCTCTCTT 465
| ||| || | || || ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 415 TGTTACGGCCAAAGG--AACCGTG-CTATAGTCTACGAATTCATGCCCAATGGCTGTCTT 471
Query 466 GA-CCACCATC-TCTTTGCTCA--CG-CGA--G-GCA--G---G-T---TCAGGGTCTTA 508
|| || || | ||||||| || || ||| | ||| | | | |||||||| ||
Sbjct 472 GAGCC-TCA-CATCTTTGCACACGCGACGAGGGTGCAGGGTCAGTTACCTCAGGGTC-TA 528
Query 509 C-TCTGCCAACTAGGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTT-GGTGTAGC 566
| || |||| |||||||||||||||| | |||||| ||||||||||| || ||||||||
Sbjct 529 CAACTACCAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCT-TTGGGTGTAGC 587
Query 567 CGAA-GGTCTTGTTTATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCG 625
| || ||||| |||||| ||||||||| ||| | | |||| || ||||| |||||| ||
Sbjct 588 C-AAGGGTCTGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAAGCCG 646
Query 626 AAAACATTTTACTTGA--CAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGAC 683
||| ||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 647 GAAATATTCTACTTGATGCAA--ATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGAC 704
Query 684 TAAGATCG 691
||| ||||
Sbjct 705 TAAAATCG 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5