BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60090.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496147 jgi|Araly1|496147|fgenesh2_kg.8__1963__AT5G60090.1 1535 0.0
Ahg918662 jgi|Araly1|918662|Al_scaffold_0071_4 1203 0.0
Ahg489695 jgi|Araly1|489695|fgenesh2_kg.6__2829__AT5G60090.1 699 0.0
> Ahg496147 jgi|Araly1|496147|fgenesh2_kg.8__1963__AT5G60090.1
Length=1224
Score = 1535 bits (831), Expect = 0.0
Identities = 1088/1210 (90%), Gaps = 25/1210 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | |||| || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAAACCTCGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTC-CGACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCTG 178
||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTCTC-ACTTCCTGACGATCGTGAAGTTGCAGATCCCACTGCT- 177
Query 179 C-TCTGTTACC-AGTATCTCCACCTCTACCTGATAATTGTGGAGAATCATTTCTATGGCG 236
| | | || || | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 CGTTTTTTCCCTA-TATCTCCACCTCTACCTGATAATTGTGGAGCATCATTTCTATGGCG 236
Query 237 TGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TTTATCTCGGCAAAGGCAACT 295
|| |||||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 237 CGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATTT-TCTCGGCAGAGGCAACT 295
Query 296 TCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTGGATGGAGCGGTAAAGGTTC 355
||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||| |||
Sbjct 296 TCGGCGAAGTCTATCGCTGCCGTTTCTCAAGACTTAATGAGGATGGAGCCGTAAAGATTC 355
Query 356 AAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACGTG 415
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACATG 415
Query 416 CAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGTTACGGCCAAAGGAACCGTG 475
|| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 416 CAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCATTGTTACGGCCAAAGGAACCGTG 475
Query 476 CTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCGTCACATCTTTGCACACAAA 534
||||| | |||||||||||| |||| || | ||||||||||||||||||||||||| |
Sbjct 476 CTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCGTCACATCTTTGCACACGCA 534
Query 535 ACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTACCAATTAGGGTTTTGGATTG 593
|||| |||| |||||||| ||| |||||||| || |||||||||||||||||| ||||
Sbjct 535 ACGAGGGTGCAGGGTCCGTTTCCTCAGGGTCTA-CAACTACCAATTAGGGTTTTGAATTG 593
Query 594 GTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCCTGGTTTATCTACACGAGGA 653
| | |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 594 GGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTCTGGTTTATCTACACCAGGA 653
Query 654 GCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT-TACTTGATGCAGATTTTG 712
|||||||||||||||| ||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 654 GCTGAAAGTGATTAACCGAGATGTCAAGGCCGGAAATAT-TCTACTTGATGCAAATTTTG 712
Query 713 TTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTTGAAGATGAAAACGGTGTTG 772
| || |||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 713 TGCCAAAGCTGACTGATTTTGGATTGGCGACTAAAATCGATGTAGATGAAAACGGTGTTG 772
Query 773 AGCAGCAGCAACG-GATCATTCCGATGAAGGCATCTATGGGATACATTGCACCGGAAGGA 831
|| ||||| | | ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 773 AGAAGCAG-ATCCTGATCAATCCGATGAAGGGATCTTTGGGATACATTGCACCGGAAGGA 831
Query 832 GAGATTTCCTGGTTGGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTA 891
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 832 GAGATTTCCGGGTTTGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTGTTA 891
Query 892 GTGCTTTTCACCGGAAGGAAACCTTTTTAT-TCGGATAATCCTGCTGGGAAAA---AGAA 947
|||||||||||||||||| | ||||||||| | | | || |||| ||||| | ||||
Sbjct 892 GTGCTTTTCACCGGAAGGCAGCCTTTTTATGT-GAAGAAACCTGTTGGGATTAGGGAGAA 950
Query 948 TCTCACTGATTGGTTTTTGAGAGTATGGGATAGGA-TCGAGGATGCGCCTGTGAAAGCTG 1006
||||||||| |||||| | ||| ||| | ||| | ||||||||||||||||||||| ||
Sbjct 951 TCTCACTGAATGGTTTATCAGAATATTGCCTAG-ACTCGAGGATGCGCCTGTGAAAGTTG 1009
Query 1007 ATGTTGCGCTCGGTAATAGGTACTCGGTTGAAGGTTTAAAGAAGATATTTGATACTGCGA 1066
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATGTTGCGCTCGGTTATAGGTATTCGGTTGAAGGTTTAAAGAAGATATTTGATACTGCGA 1069
Query 1067 GGATGTGTATAAAGGCAGAGAGACTTGAACGGCCTACCATGAGTGAAGTGGAAGCGATGG 1126
|||||||| ||||| ||||| |||||||||||||||| |||||||| |||||||| ||||
Sbjct 1070 GGATGTGTTTAAAGACAGAGCGACTTGAACGGCCTACTATGAGTGATGTGGAAGCAATGG 1129
Query 1127 TTCTCGAAGCTGCAGCTTTCCCGGTCCAAGTGCCGCGCCAGGTGACAAGGAGGCGTTCGG 1186
|||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1130 TTCTCGAAGCTGCATCTTTCCCGGTCCAAGTGCCGCCCCAGGTGAAAAGGAGGCGTTCGG 1189
Query 1187 CTTCAACATA 1196
|||| |||||
Sbjct 1190 CTTCGACATA 1199
> Ahg918662 jgi|Araly1|918662|Al_scaffold_0071_4
Length=1095
Score = 1203 bits (651), Expect = 0.0
Identities = 840/930 (90%), Gaps = 18/930 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | |||| || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAAACCTCGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTC-CGACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCTG 178
||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTCTC-ACTTCCTGACGATCGTGAAGTTGCAGATCCCACTGCT- 177
Query 179 C-TCTGTTACC-AGTATCTCCACCTCTACCTGATAATTGTGGAGAATCATTTCTATGGCG 236
| | | || || | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 CGTTTTTTCCCTA-TATCTCCACCTCTACCTGATAATTGTGGAGCATCATTTCTATGGCG 236
Query 237 TGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TTTATCTCGGCAAAGGCAACT 295
|| |||||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 237 CGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATTT-TCTCGGCAGAGGCAACT 295
Query 296 TCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTGGATGGAGCGGTAAAGGTTC 355
||||||||||| |||||||| |||||||||||||||| ||||||||| |||||| |||
Sbjct 296 TCGGCGAAGTCTATCGCTGCCGCTTCTCAAGACTTAATGAGGATGGAGCCGTAAAGATTC 355
Query 356 AAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACGTG 415
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACATG 415
Query 416 CAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGTTACGGCCAAAGGAACCGTG 475
|| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 416 CAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCATTGTTACGGCCAAAGGAACCGTG 475
Query 476 CTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCGTCACATCTTTGCACACAAA 534
||||| | |||||||||||| |||| || | ||||||||||||||||||||||||| |
Sbjct 476 CTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCGTCACATCTTTGCACACGCA 534
Query 535 ACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTACCAATTAGGGTTTTGGATTG 593
|||| |||| |||||||| ||| |||||||| || |||||||||||||||||||||||
Sbjct 535 ACGAGGGTGCAGGGTCCGTTTCCTCAGGGTCTA-CAACTACCAATTAGGGTTTTGGATTG 593
Query 594 GTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCCTGGTTTATCTACACGAGGA 653
| | |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 594 GGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTCTGGTTTATCTACACCAGGA 653
Query 654 GCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT-TACTTGATGCAGATTTTG 712
|||||||||||||||| ||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 654 GCTGAAAGTGATTAACCGAGATGTCAAGGCCGGAAATAT-TCTACTTGATGCAAATTTTG 712
Query 713 TTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTTGAAGATGAAAACGGTGTTG 772
| ||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 713 TGCCGAAGCTGACTGATTTTGGATTGGCGACTAAAATCGATGTAGATGAAAACGGTGTTG 772
Query 773 AGCAGCAGCAACG-GATCATTCCGATGAAGGCATCTATGGGATACATTGCACCGGAAGGA 831
|| ||||| | | ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 773 AGAAGCAG-ATCCTGATCAATCCGATGAAGGGATCTTTGGGATACATTGCACCGGAAGGA 831
Query 832 GAGATTTCCTGGTTGGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTA 891
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 832 GAGATTTCCGGGTTTGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTGGTA 891
Query 892 GTGCTTTTCACCGGAAGGAAACCTTTTTAT 921
|||||||||||||||||| | ||||| |||
Sbjct 892 GTGCTTTTCACCGGAAGGGAGCCTTTCTAT 921
> Ahg489695 jgi|Araly1|489695|fgenesh2_kg.6__2829__AT5G60090.1
Length=1149
Score = 699 bits (378), Expect = 0.0
Identities = 497/554 (90%), Gaps = 9/554 (2%)
Strand=Plus/Plus
Query 218 GAGAATCATTTCTATGGCGTGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TT 276
||| ||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||
Sbjct 179 GAGTATCATTTCTATGGCGCGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATT 238
Query 277 TATCTCGGCAAAGGCAACTTCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTG 336
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 239 T-TCTCGGCAAAGGCAACTTCGGCGAAGTCTATCGCTGCCGTTTCTCAAGACTTAATGAG 297
Query 337 GATGGAGCGGTAAAGGTTCAAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCA 396
|||||||| || ||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 298 GATGGAGCCGTGAAGATTCAAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCA 357
Query 397 GAGGTTACAACGTTACGTGCAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGT 456
|||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 358 GAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCAATTGT 417
Query 457 TACGGCCAAAGGAACCGTGCTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCG 515
|||||||||||||||||||||||| | |||||||||||| |||| || | ||||||||
Sbjct 418 TACGGCCAAAGGAACCGTGCTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCC 476
Query 516 TCACATCTTTGCACACAAAACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTAC 574
|||||||||||||||| |||| |||| |||||| | |||| |||||||| || ||||
Sbjct 477 TCACATCTTTGCACACGCGACGAGGGTGCAGGGTCAGTTACCTCAGGGTCTA-CAACTAC 535
Query 575 CAATTAGGGTTTTGGATTGGTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCC 634
|||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||| |
Sbjct 536 CAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTC 595
Query 635 TGGTTTATCTACACGAGGAGCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT 694
|||||||||||||| |||||||||||||||||||| |||||||||| |||||||| || |
Sbjct 596 TGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAAGCCGGAAATAT-T 654
Query 695 -TACTTGATGCAGATTTTGTTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTT 753
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 655 CTACTTGATGCAAATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGACTAAAATCGAT 714
Query 754 GAAGATGAAAACGG 767
| |||||||| |||
Sbjct 715 GTAGATGAAA-CGG 727
Score = 536 bits (290), Expect = 1e-151
Identities = 370/408 (91%), Gaps = 7/408 (2%)
Strand=Plus/Plus
Query 795 GATG-AA-GGCATCTATGGGATACATTGCACCGGAAGGAGAGATTTCCTGGTTGGTTTCG 852
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GATGAAACGGGATCTTTGGGATACATTGCACCGGAAGGAGAGATTTCCCGGTTGGTTTCG 777
Query 853 ACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTAGTGCTTTTCACCGGAAGGAAA 912
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 778 ACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTTTTAGTGCTTTTCACCGGAAGGCAG 837
Query 913 CCTTTTTATTCGGATAATCCTGCTGGGAAAAAGAATCTCACTGATTGGTTTTTGAGAGTA 972
|||||||||||| | || |||| ||||||||||||||||||||| |||||| | ||||||
Sbjct 838 CCTTTTTATTCGAAGAAACCTGTTGGGAAAAAGAATCTCACTGACTGGTTTATAAGAGTA 897
Query 973 TGGGATAGGATC-GAGGATGCGCCTGTGAAAGCTGATGTTGCGCTCGGTAATAGGTACTC 1031
||| ||| || ||||||||||||||| ||| |||||||||||||||| ||||||| ||
Sbjct 898 TGGCCTAG-ATTAGAGGATGCGCCTGTGCAAGTTGATGTTGCGCTCGGTTATAGGTATTC 956
Query 1032 GGTTGAAGGTTTAAAGAAGATATTTGATACTGCGAGGATGTGTATAAAGGCAGAGAGACT 1091
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 957 GGTTGAAGGTTTAAAGAAGATATTTGATACTGCCAGGATGTGTATAAAGGCAGAGCCACT 1016
Query 1092 TGAACGGCCTACCATGAGTGAAGTGGAAGCGATGGTTCTCGAAGCTGCAGCTTTCCCGGT 1151
||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||
Sbjct 1017 TGAACGGCCTACCATGAGTGATGTGGAAGCAATGGTTCTCAAAGCTGCATCTTTCCCGGT 1076
Query 1152 CCAAGTGCCGCG-CC--AGGTGACAAGGAGGCGTTCGGCTTCAACATA 1196
||||||||||| || |||||| |||||||||||||||||| |||||
Sbjct 1077 CCAAGTGCCGCCACCCCAGGTGAAAAGGAGGCGTTCGGCTTCGACATA 1124
Score = 244 bits (132), Expect = 9e-64
Identities = 164/179 (92%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | | || || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAAACCTTGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTC-CGACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCT 177
||||||||||||||||||| | ||| |||||||||||||||||| ||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTCGC-ACTTCCTGACGATCGTGAAGTTTCAGATCCCACTGCT 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5