BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60110.1 Length=984 Score E Sequences producing significant alignments: (Bits) Value Ahg950763 jgi|Araly1|950763|scaffold_802650.1 1526 0.0 Ahg952436 jgi|Araly1|952436|scaffold_7100006.1 1520 0.0 Ahg950774 jgi|Araly1|950774|scaffold_802661.1 1476 0.0 Ahg952298 jgi|Araly1|952298|scaffold_5400001.1 209 3e-53 Ahg930639 jgi|Araly1|930639|scaffold_303096.1 209 3e-53 > Ahg950763 jgi|Araly1|950763|scaffold_802650.1 Length=1027 Score = 1526 bits (826), Expect = 0.0 Identities = 936/989 (95%), Gaps = 7/989 (1%) Strand=Plus/Plus Query 1 ATGGCAGTCGCTGATAATCCCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 21 ATGGCAGTCGCCGATAATTCCTTTTCAATGTCGACCATGTTCAATGCTTTACCATACTCT 80 Query 61 AAAGGAATCTCCGGTTCCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AAAGGAATCTCCGGTTTCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 140 Query 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 141 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGAAGGTGTGTCTTACTTTAAAG-G 199 Query 181 -ATGATCTCAAATTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGA 239 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| || Sbjct 200 CATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA 259 Query 240 CTCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCT 299 |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| Sbjct 260 CTCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAGAAGCT 319 Query 300 CCTCGGCAAATCAGATGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCGCCGCTTCC 358 |||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 320 CCTCGGCAAATCAGATGATGCCGACGCGCT-CTTCTGTGCCGCTATCTTGCGCCGCTTCC 378 Query 359 TCCACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCG 418 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 379 TCCACATCACGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTCGTTTTCG 438 Query 419 ACAAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGT 478 |||||| |||||| |||||| ||||||||| |||||||||||| |||||||||||||||| Sbjct 439 ACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAGCGT 498 Query 479 GTGACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACT 538 |||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 499 GTGATCAACACGGCTGCATCGCGCTCAACGATATCATAACCGACTCTGACGATCCTTACT 558 Query 539 ACAGAGATCAGCTACTAGAATTGGTCGCATCCAACGCTCTCCGGCTAAGCAACGATGCTT 598 ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| Sbjct 559 ACAGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTT 618 Query 599 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACA 658 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 619 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTTGCGTTGCACTCACAACA 678 Query 659 TCGCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACA 718 |||| |||||||||||||| || |||||||| || ||||||||||||||||||||||||| Sbjct 679 TCGCGGTTAATCTTTATGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACA 738 Query 719 TCGTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 778 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 739 TCGTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 798 Query 779 GTTGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 838 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 ATTGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 858 Query 839 TCAAGGCTCTGAGATTCACCAAG---ATGTCTAGGATGGATCTGTTTTGGGGTTTGGTGC 895 ||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||| Sbjct 859 TCAAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGC 918 Query 896 AGAAGCTCATGCCTTTTATCCGTCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAACA 955 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || Sbjct 919 AGAAGCTCATGCCTTTTCTCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCA 978 Query 956 TCTTGGACTCATTTAGGCTTCGTTGCTGA 984 ||||||||||||||||||||||||||||| Sbjct 979 TCTTGGACTCATTTAGGCTTCGTTGCTGA 1007 > Ahg952436 jgi|Araly1|952436|scaffold_7100006.1 Length=1027 Score = 1520 bits (823), Expect = 0.0 Identities = 935/989 (95%), Gaps = 7/989 (1%) Strand=Plus/Plus Query 1 ATGGCAGTCGCTGATAATCCCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60 ||||||||||| |||||| |||||||| |||||||||||||||||||||||||| || || Sbjct 21 ATGGCAGTCGCCGATAATTCCTTTTCACTGTCGACCATGTTCAATGCTTTACCATACTCT 80 Query 61 AAAGGAATCTCCGGTTCCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AAAGGAATCTCCGGTTTCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 140 Query 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 141 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGAAGGTGTGTCTTACTTTAAAG-G 199 Query 181 -ATGATCTCAAATTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGA 239 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| || Sbjct 200 CATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA 259 Query 240 CTCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCT 299 |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| Sbjct 260 CTCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAGAAGCT 319 Query 300 CCTCGGCAAATCAGATGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCGCCGCTTCC 358 |||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 320 CCTCGGCAAATCAGATGATGCCGACGCGCT-CTTCTGTGCCGCTATCTTGCGCCGCTTCC 378 Query 359 TCCACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCG 418 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 379 TCCACATCACGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTCGTTTTCG 438 Query 419 ACAAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGT 478 |||||| |||||| |||||| ||||||||| |||||||||||| |||||||||||||||| Sbjct 439 ACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAGCGT 498 Query 479 GTGACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACT 538 |||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 499 GTGATCAACACGGCTGCATCGCGCTCAACGATATCATAACCGACTCTGACGATCCTTACT 558 Query 539 ACAGAGATCAGCTACTAGAATTGGTCGCATCCAACGCTCTCCGGCTAAGCAACGATGCTT 598 ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| Sbjct 559 ACAGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTT 618 Query 599 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACA 658 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 619 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTTGCGTTGCACTCACAACA 678 Query 659 TCGCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACA 718 |||| |||||||||||||| || |||||||| || ||||||||||||||||||||||||| Sbjct 679 TCGCGGTTAATCTTTATGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACA 738 Query 719 TCGTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 778 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 739 TCGTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 798 Query 779 GTTGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 838 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 ATTGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 858 Query 839 TCAAGGCTCTGAGATTCACCAAG---ATGTCTAGGATGGATCTGTTTTGGGGTTTGGTGC 895 ||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||| Sbjct 859 TCAAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGC 918 Query 896 AGAAGCTCATGCCTTTTATCCGTCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAACA 955 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || Sbjct 919 AGAAGCTCATGCCTTTTCTCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCA 978 Query 956 TCTTGGACTCATTTAGGCTTCGTTGCTGA 984 ||||||||||||||||||||||||||||| Sbjct 979 TCTTGGACTCATTTAGGCTTCGTTGCTGA 1007 > Ahg950774 jgi|Araly1|950774|scaffold_802661.1 Length=1037 Score = 1476 bits (799), Expect = 0.0 Identities = 925/987 (94%), Gaps = 3/987 (0%) Strand=Plus/Plus Query 1 ATGGCAGTCGCTGATAATCCCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60 ||||||||||| |||||| |||||| ||||||||||||||||||||||| |||| ||||| Sbjct 27 ATGGCAGTCGCCGATAATTCCTTTTTAATGTCGACCATGTTCAATGCTTCACCATACCCT 86 Query 61 AAAGGAATCTCCGGTTCCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120 |||||||| ||||||| |||||||||||| || ||||||||| ||||||||||||||||| Sbjct 87 AAAGGAATTTCCGGTTACATTCCTCCTCCAGGTTTCGCCCCAGGCGCCTCCGCCACGCCC 146 Query 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180 |||||| |||||||||||||||||||||||||||| || | |||||||||||||| ||| Sbjct 147 TTGCACACAGCTCTGTTCAACCTAATGACTGACGGAGAAGCTGTGTCTTACTTTAGGGAG 206 Query 181 ATGATCTCAAATTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGAC 240 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||| Sbjct 207 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCGTCGTTGCTGACGTCAGAC 266 Query 241 TCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCTC 300 ||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||| Sbjct 267 TCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAAAAGCTC 326 Query 301 CTCGGCAAATCAGATGACGTGGACGCCTTCTTCTGTGCCGCTATCTTGCGCCGCTTCCTC 360 ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 327 CTCGGGAAATCAGATGAGGTGGACGCGTTCTTCTGTGCCGCTATCTTACGCCGCTTCCTC 386 Query 361 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCGAC 420 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 387 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGGCATGGTCGTTTTCGAC 446 Query 421 AAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGTGT 480 |||| |||||||||| || ||||||||| |||||||||||||||||||||| |||||||| Sbjct 447 AAGGAGATGAAAAAGCCAATGTACGAGCACATTCTCTACCACGCTCTCGACATAGCGTGT 506 Query 481 GACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACTAC 540 ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 507 GACCAACACGGCTGCATCGCACTCAACGATATCATAACCGACGCTGACGATCCTTACTAC 566 Query 541 AGAGATCAGCTACTAGAATTGGTCGCATCCAACGCTCTCCGGCTAAGCAACGATGCTTCA 600 ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| Sbjct 567 AGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTTCA 626 Query 601 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACATC 660 ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 627 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTACGAGTTGCGTTGCATTCACAACATC 686 Query 661 GCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACATC 720 || |||||||||| ||| || |||||||| || ||||||||||||||||||||||||||| Sbjct 687 GCGGTTAATCTTTTTGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACATC 746 Query 721 GTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGGGT 780 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | Sbjct 747 GTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGCTTGTGGTGGTTGTGGAGCTTTTGGAT 806 Query 781 TGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 840 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 TGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 866 Query 841 AAGGCTCTGAGATTCACCAAG---ATGTCTAGGATGGATCTGTTTTGGGGTTTGGTGCAG 897 ||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 867 AAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGCAG 926 Query 898 AAGCTCATGCCTTTTATCCGTCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAACATC 957 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 927 AAGCTCATGCCTTTTATCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCATC 986 Query 958 TTGGACTCATTTAGGCTTCGTTGCTGA 984 ||||||||||||||||||||||||||| Sbjct 987 TTGGACTCATTTAGGCTTCGTTGCTGA 1013 > Ahg952298 jgi|Araly1|952298|scaffold_5400001.1 Length=239 Score = 209 bits (113), Expect = 3e-53 Identities = 143/157 (91%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 196 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG 255 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 1 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG 60 Query 256 TCGATCGTCACAACCAAGTTCGGCTCGA-GACGCGTGCAGAAGCTCCTCGGCAAATCAGA 314 |||||||| ||| ||||| |||||||| | ||||||||||||||||| || |||||||| Sbjct 61 ACGATCGTCGCAAACAAGTACGGCTCGAAG-CGCGTGCAGAAGCTCCTAGGAAAATCAGA 119 Query 315 TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG 350 |||||||||||| || |||||| |||||||||||||| Sbjct 120 TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG 155 Score = 119 bits (64), Expect = 4e-26 Identities = 80/87 (92%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 808 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCTCTGAGATTCACCAAG-A--TG 864 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | || Sbjct 153 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG 212 Query 865 TCTAGGATGGATCTGTTTTGGGGTTTG 891 |||| ||| |||||||||||||||||| Sbjct 213 TCTATGATTGATCTGTTTTGGGGTTTG 239 > Ahg930639 jgi|Araly1|930639|scaffold_303096.1 Length=239 Score = 209 bits (113), Expect = 3e-53 Identities = 143/157 (91%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 196 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG 255 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 1 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG 60 Query 256 TCGATCGTCACAACCAAGTTCGGCTCGA-GACGCGTGCAGAAGCTCCTCGGCAAATCAGA 314 |||||||| ||| ||||| |||||||| | ||||||||||||||||| || |||||||| Sbjct 61 ACGATCGTCGCAAACAAGTACGGCTCGAAG-CGCGTGCAGAAGCTCCTAGGAAAATCAGA 119 Query 315 TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG 350 |||||||||||| || |||||| |||||||||||||| Sbjct 120 TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG 155 Score = 119 bits (64), Expect = 4e-26 Identities = 80/87 (92%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 808 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCTCTGAGATTCACCAAG-A--TG 864 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | || Sbjct 153 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG 212 Query 865 TCTAGGATGGATCTGTTTTGGGGTTTG 891 |||| ||| |||||||||||||||||| Sbjct 213 TCTATGATTGATCTGTTTTGGGGTTTG 239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36559877403 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5