BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60120.2
Length=2297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497236 jgi|Araly1|497236|fgenesh2_kg.71__6__AT5G60120.1 1768 0.0
Ahg496151 jgi|Araly1|496151|fgenesh2_kg.8__1967__AT5G60120.1 1762 0.0
Ahg905670 jgi|Araly1|905670|Al_scaffold_0003_2798 654 0.0
Ahg950765 jgi|Araly1|950765|scaffold_802652.1 189 8e-47
> Ahg497236 jgi|Araly1|497236|fgenesh2_kg.71__6__AT5G60120.1
Length=1784
Score = 1768 bits (957), Expect = 0.0
Identities = 1235/1357 (91%), Gaps = 68/1357 (5%)
Strand=Plus/Plus
Query 154 TCCATGTCTCCTCAATCTCATTTCTCTCCTTAGTGATTGAGCTTTTTCCTTCTTTCTCTT 213
||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 39 TCCATGTCTCCTCAATCTCGTTTCTCTCCTTAGTGATCGAGC-TTTTCCTTCTTTCTC-- 95
Query 214 TGGTTATTATTCCTTCTCCTCCTCCGTCGTGTTTTTGATTGATTTCAGAATCTAAATCTC 273
| || |||||| | |||| | | || |||||||||||||||||||
Sbjct 96 T-GTAATTATT--AT-TCCT--T-C-TC------------CATTTCAGAATCTAAATCTC 135
Query 274 -C-G-TTTGATTTCTCCATACTCGTGCTGATTTTCACCTATGTAATGTGATTTATGAGCT 330
| | ||| |||| ||||||| | | | ||||||| || ||| |||||||||| ||||||
Sbjct 136 TCTGATTT-ATTTTTCCATACACTTACAGATTTTCTCCGATGAAATGTGATTTTTGAGCT 194
Query 331 CTGTTTATTTCAAATCGACGGCGATCGTTG-AATTTATTGATCAATGTGTAAGTAAGAGC 389
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 195 CTGTTTATTTCAAATCGACGGCGATCGTTGAAATTTATTGATCAATGTGTAAGTAAGAGC 254
Query 390 TTGAAGAAATAgtttttgttgttgttgtgaaagctcagagttttgtttgcttttttgttg 449
||||||||||| ||||||||||| | ||||||||| |||||||||||
Sbjct 255 TTGAAGAAATA------GTTGTTGTTGT------T----GTTTTGTTTACTTTTTTGTTG 298
Query 450 acttttttgAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAG 509
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 AC-TTTTTGAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGGCCGAGTCTACTCAG 357
Query 510 AACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCGGTG 569
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 358 AACGAACGAGATTCGGTTACTGTTGAAGGGGTTTCTTTGAATCAGATGGATGAATCAGTG 417
Query 570 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAG 629
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGCATAGATGGTGAAGATGAG 477
Query 630 TTGTGCTCTACACGAACGGTCAAGTTTCAATTTGAGATACTGAAAGGA-G-GAGG-agaa 686
||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||
Sbjct 478 TTGTGTTCTACACGAACCGTCAAGTTTCAATTTGAGATACTAAAAGGAGGAGAGGAAGAA 537
Query 687 gaagaagaagaagatgatgatgaaagaagTGCTGTGATGATGACTAAGGAGTTTTTTCCT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCT 597
Query 747 GTTGCTAAAGGCATGAACTTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGAT 806
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 598 GTTGCTAAAGGCATGAATTTTATGGATTCGAGCGCACAAAGTTCCAGGAGCACCGTTGAT 657
Query 807 ATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTGGC 866
|||||||||||||| ||||||||||| |||||| || | ||| || |
Sbjct 658 ATTTCCTTCCAGAGAGGGAAACAAGGCGGAGAC-TT-T-GGT-------GC--------C 699
Query 867 GATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 926
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GATGCTGCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 759
Query 927 AGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGCAGATGGGAA 986
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 760 AGGTCTAAGAGTTCGCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGGAGATGGGAA 819
Query 987 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 879
Query 1047 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAAT 1106
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 880 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAGTTCCGGGGTCTGGAGGCTGACATCAAT 939
Query 1107 TTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 1166
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTCATTATCAGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 999
Query 1167 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAA 1226
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1000 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAACTCAAGATATCAA 1059
Query 1227 GGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGCTTCATGGAAAC 1286
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1060 GGAGTTTCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGTTTCATGGAAAC 1119
Query 1287 ATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAG 1346
|||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1120 ATGGCTTCTGACAAGGCAGCCATACAATGGAATGGAAGGGAAGCGGCTTCCTTAATTGAG 1179
Query 1347 CCTCATGCATCCCGAATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1406
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CCTCATGCATCCCGGATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1239
Query 1407 ATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACCAT 1466
|||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1240 ATCTCTCTTTCACTGGGAGATGGTCCAAAGCAAAAAGAAAGGGCTCTTCGGCTTCACCAT 1299
Query 1467 GTCCCTAACAATTCC-GTATGTGGAAGGAACACCATG 1502
|||||||| | || | |||||||||||||||| ||||
Sbjct 1300 GTCCCTAATA-TTACTGTATGTGGAAGGAACATCATG 1335
Score = 719 bits (389), Expect = 0.0
Identities = 430/450 (96%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1395
Query 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1688
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1396 TCAGACCATCTTAATAACCGGCATTCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1455
Query 1689 ACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1748
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACACCAGAGAAAGGTCATATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1515
Query 1749 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCA 1808
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1516 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCTCTGTTCTCA 1575
Query 1809 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATT 1868
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1576 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCACCTTCATCCATAGCTACT 1635
Query 1869 CATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCA 1928
| |||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1636 CCTCATCCCTCTCAGCCCTTCTTAAATATGAATCAGCCCGGTCTCTATGTTATCCACCCA 1695
Query 1929 TCTGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCATAG 1988
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1696 TCTGATTACACATCTCAGCACCACCACAATCTCATGAATCGCCCACAACCACCACCATAG 1755
Query 1989 CTTCCTCCTTCCTCC-GCATAACTCAAGGT 2017
||||||||||| ||| || || ||||||||
Sbjct 1756 CTTCCTCCTTC-TCCCGCCTAGCTCAAGGT 1784
> Ahg496151 jgi|Araly1|496151|fgenesh2_kg.8__1967__AT5G60120.1
Length=1873
Score = 1762 bits (954), Expect = 0.0
Identities = 1234/1357 (91%), Gaps = 68/1357 (5%)
Strand=Plus/Plus
Query 154 TCCATGTCTCCTCAATCTCATTTCTCTCCTTAGTGATTGAGCTTTTTCCTTCTTTCTCTT 213
||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 39 TCCATGTCTCCTCAATCTCGTTTCTCTCCTTAGTGATCGAGC-TTTTCCTTCTTTCTC-- 95
Query 214 TGGTTATTATTCCTTCTCCTCCTCCGTCGTGTTTTTGATTGATTTCAGAATCTAAATCTC 273
| || |||||| | |||| | | || |||||||||||||||||||
Sbjct 96 T-GTAATTATT--AT-TCCT--T-C-TC------------CATTTCAGAATCTAAATCTC 135
Query 274 -C-G-TTTGATTTCTCCATACTCGTGCTGATTTTCACCTATGTAATGTGATTTATGAGCT 330
| | ||| |||| ||||||| | | | ||||||| || ||| |||||||||| ||||||
Sbjct 136 TCTGATTT-ATTTTTCCATACACTTACAGATTTTCTCCGATGAAATGTGATTTTTGAGCT 194
Query 331 CTGTTTATTTCAAATCGACGGCGATCGTTG-AATTTATTGATCAATGTGTAAGTAAGAGC 389
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 195 CTGTTTATTTCAAATCGACGGCGATCGTTGAAATTTATTGATCAATGTGTAAGTAAGAGC 254
Query 390 TTGAAGAAATAgtttttgttgttgttgtgaaagctcagagttttgtttgcttttttgttg 449
||||||||||| ||||||||||| | ||||||||| |||||||||||
Sbjct 255 TTGAAGAAATA------GTTGTTGTTGT------T----GTTTTGTTTACTTTTTTGTTG 298
Query 450 acttttttgAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAG 509
|| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 AC-TTGTTGAGATTGATGCTGGATCTCAATCTCGACGTCGACTCGGCCGAGTCTACTCAG 357
Query 510 AACGAACGAGATTCGATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCGGTG 569
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 358 AACGAACGAGATTCGGTTACTGTTGAAGGGGTTTCTTTGAATCAGATGGATGAATCAGTG 417
Query 570 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAG 629
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 ACGTCGAACTCTTCTGTTGTTAATGCTGAAGCTTCTAGCTGCATAGATGGTGAAGATGAG 477
Query 630 TTGTGCTCTACACGAACGGTCAAGTTTCAATTTGAGATACTGAAAGGA-G-GAGG-agaa 686
||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||
Sbjct 478 TTGTGTTCTACACGAACCGTCAAGTTTCAATTTGAGATACTAAAAGGAGGAGAGGAAGAA 537
Query 687 gaagaagaagaagatgatgatgaaagaagTGCTGTGATGATGACTAAGGAGTTTTTTCCT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAGAAGAAGAAGATGATGATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCT 597
Query 747 GTTGCTAAAGGCATGAACTTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGAT 806
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 598 GTTGCTAAAGGCATGAATTTTATGGATTCGAGCGCACAAAGTTCCAGGAGCACCGTTGAT 657
Query 807 ATTTCCTTCCAGAGGGGGAAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTGGC 866
|||||||||||||| ||||||||||| |||||| || | ||| || |
Sbjct 658 ATTTCCTTCCAGAGAGGGAAACAAGGCGGAGAC-TT-T-GGT-------GC--------C 699
Query 867 GATGCTTCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 926
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GATGCTGCACGGGTGATGCAGCCACCATCACAGCCGGTGAAGAAAAGCAGGAGAGGTCCT 759
Query 927 AGGTCTAAGAGTTCTCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGCAGATGGGAA 986
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 760 AGGTCTAAGAGTTCGCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGGAGATGGGAA 819
Query 987 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TCGCATATCTGGGATTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCT 879
Query 1047 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAAT 1106
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 880 GCAGCTAGGGCGTATGATCGAGCTGCTGTCAAGTTCCGGGGTCTGGAGGCTGACATCAAT 939
Query 1107 TTCGTTATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 1166
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTCATTATCAGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAA 999
Query 1167 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAA 1226
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1000 GTTGTGCAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAACTCAAGATATCAA 1059
Query 1227 GGAGTTGCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGCTTCATGGAAAC 1286
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1060 GGAGTTTCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGTTTCATGGAAAC 1119
Query 1287 ATGGGTTGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTTAATTGAG 1346
|||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1120 ATGGCTTCTGACAAGGCAGCCATACAATGGAATGGAAGGGAAGCGGCTTCCTTAATTGAG 1179
Query 1347 CCTCATGCATCCCGAATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1406
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CCTCATGCATCCCGGATGATTCCCGAGGCAGCTAATGTTAAGCTCGACCTCAACTTGGGA 1239
Query 1407 ATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACCAT 1466
|||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1240 ATCTCTCTTTCACTGGGAGATGGTCCAAAGCAAAAAGAAAGGGCTCTTCGGCTTCACCAT 1299
Query 1467 GTCCCTAACAATTCC-GTATGTGGAAGGAACACCATG 1502
|||||||| | || | |||||||||||||||| ||||
Sbjct 1300 GTCCCTAATA-TTACTGTATGTGGAAGGAACATCATG 1335
Score = 835 bits (452), Expect = 0.0
Identities = 513/542 (95%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1395
Query 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1688
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1396 TCAGACCATCTTAATAACCGGCATTCCCTTCCTTCTGCGTTCTTTTCACCCATGGAAAGA 1455
Query 1689 ACACCAGAGAAAGGGCTTATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1748
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACACCAGAGAAAGGTCATATGTTACGTTCTCATCAAAGCTTCCCAGCCAGGACATGGCAA 1515
Query 1749 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCACTGTTTTCA 1808
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1516 GGGCATGATCAGTCCAGTGGTGGGACCGCCGTAGCAGCTACAGCACCGCCTCTGTTCTCA 1575
Query 1809 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCTCCTTCATCCACAGCTATT 1868
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1576 AATGCAGCATCATCAGGATTCTCACTCTCAGCTACACGCCCACCTTCATCCATAGCTACT 1635
Query 1869 CATCATCCTTCTCAGCCCTTCGTCAATCTGAATCAGCCCGGTCTCTATGTTATCCACCCA 1928
| |||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1636 CCTCATCCCTCTCAGCCCTTCTTAAATATGAATCAGCCCGGTCTCTATGTTATCCACCCA 1695
Query 1929 TCTGATTACATATCTCAGCACCAACACAATCTCATGAACCGCCCACAACCACCACCATAG 1988
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1696 TCTGATTACACATCTCAGCACCACCACAATCTCATGAATCGCCCACAACCACCACCATAG 1755
Query 1989 CTTCCTCCTTCCTCCGCATAACTCAAGGTTCTACACAGCCCTGAGGTTGGAATAAGTTGG 2048
||||||||||| ||||| || |||||||||||||||| ||||||||||||||||| ||||
Sbjct 1756 CTTCCTCCTTCTTCCGCCTAGCTCAAGGTTCTACACAACCCTGAGGTTGGAATAACTTGG 1815
Query 2049 AAGGCCAGCCAAAACGACGCTGAATTCTCCC-AAGATCTGTTGTACTTATTGTCATTGTG 2107
|||||||||||| |||||| | ||||||| || |||| ||||||||||||||||||||
Sbjct 1816 AAGGCCAGCCAATACGACGAT---TTCTCCCCAA-ATCTATTGTACTTATTGTCATTGTG 1871
Query 2108 TG 2109
||
Sbjct 1872 TG 1873
> Ahg905670 jgi|Araly1|905670|Al_scaffold_0003_2798
Length=1083
Score = 654 bits (354), Expect = 0.0
Identities = 505/572 (88%), Gaps = 34/572 (6%)
Strand=Plus/Plus
Query 935 GAGTTCTCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGCAGATGGGAATCGCATAT 994
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAGTTCGCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGGAGATGGGAATCGCATAT 479
Query 995 CTGGGA--TTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCTGCAGCT 1052
|| | ||| | || | | | ||||||| ||||||||||||||||||||||||
Sbjct 480 CTTTAACTTTG-TG-AATCCA----A--TAGGTGGGTTTGATACTGCCCATGCTGCAGCT 531
Query 1053 AGGGCGTATGATCGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAATTTCGTT 1112
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 532 ---GCGTACGATCGAGCTGCTGTCAAGTTCCGGGGTCTGGAGGCTGACATCAATTTCATC 588
Query 1113 ATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAAGTTGTG 1172
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATCAGCGATTATGAAGAAGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAAGTTGTG 648
Query 1173 CAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAAGGAGTT 1232
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 CAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCAAGATATCAAGGAGTT 708
Query 1233 GCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGCTTCATGGAAACATGGGT 1292
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 709 GCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGTTTCATGGAAAC--GC-T 765
Query 1293 TGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTT-AATTGAGCCTCA 1351
||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 766 TGTGACAAGGCAGCCATACAATGGAATGGAAGGGAAGCTGCTTC-TTCAATTGAGCCTCA 824
Query 1352 TGCATCCCGAATGATTCCCGAGGCAGCTAAT-----GTTAAGCTCGACCTCAACTTGGGA 1406
||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 825 TGCATCCTGGATGATTCCCGAGGCAGGTAATCTATTGTTAAGCTCGACCTCAACTTGGGA 884
Query 1407 ATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACCAT 1466
| | | | ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 885 AG-TG------A--A--AGATGGTCCAAAGCAAAAAGATAGGGCTCTCCGGCTTCACCAT 933
Query 1467 GTCCCTAACAATTCCGTATGTGGAAGGAACAC 1498
||| |||||| | |||| ||||||||||||||
Sbjct 934 GTCTCTAACAGTACCGTTTGTGGAAGGAACAC 965
Score = 588 bits (318), Expect = 7e-167
Identities = 401/438 (92%), Gaps = 18/438 (4%)
Strand=Plus/Plus
Query 465 ATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAGAACGAACGAGATTCG 524
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCTAGATCTCAATCTCGACGTCGACTCGGCCGAGTCTACTCAGAACGAACGAGATTCG 60
Query 525 ATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCGGTGACGTCGAACTCTTCT 584
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCAGTGACGTCGAACTCTTCT 120
Query 585 GTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAGTTGTGCTCTACACGA 644
| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 121 GCTGTTAATGCTGAGGCTTCTAGCTGCATAGATGGTGAAGATGAGTTGTGCTCTATACGA 180
Query 645 ACGGTCAAGTTTCAATTTGAGATACTGAAAGGAGGAGGagaagaagaagaagaagatgat 704
|| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 181 ACCGTCAAGTTTCAATTTGAGATACTGAAAGGAGGAG-AG--GAAGA---------TGAT 228
Query 705 gatgaaagaagTGCTGTGATGATGACTAAGGAGTTTTTTCCTGTTGCTAAAGGCATGAAC 764
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 229 GATGAAAGAAGTGCTGTGATGA---CTAAGGAGTTTTTTCCTGTTGCCAAAGGCATGGAT 285
Query 765 TTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGATATTTCCTTCCAGAGGGGG 824
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 286 TTTATGGATTCGAGCGCACAAAGTTCCAGGAGCACCGTTGATATTTCCTTCCAGAGAGGG 345
Query 825 AAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTGGCGATGCTTCACGGGTGATG 884
|||||||| ||||||||||| || || || |||||||| |||||||||||||||||||
Sbjct 346 AAACAAGGCGGAGACTTTATCGGCAGTGGAAGCGGTGG---CGATGCTTCACGGGTGATG 402
Query 885 CAGCCACCATCACAGCCG 902
||||||||||||||||||
Sbjct 403 CAGCCACCATCACAGCCG 420
Score = 195 bits (105), Expect = 2e-48
Identities = 111/114 (97%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATGGAGACCCACATGGCTGCGGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1029
Query 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATG 1682
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCAGACCATCTTACTAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATG 1083
> Ahg950765 jgi|Araly1|950765|scaffold_802652.1
Length=398
Score = 189 bits (102), Expect = 8e-47
Identities = 111/115 (97%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 ATGGAGACCCATATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 84
Query 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCC-ATG 1682
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 85 TCAGACCATCTTACTAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCCATG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86502946395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5