BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60130.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950768 jgi|Araly1|950768|scaffold_802655.1 532 1e-150
> Ahg950768 jgi|Araly1|950768|scaffold_802655.1
Length=773
Score = 532 bits (288), Expect = 1e-150
Identities = 316/330 (96%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 574 CAGTATCTGGATGATCGTGAGAACCCATCTTTTACTCTGATCCTTAATCCGAAGAAGAAA 633
||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 423 CAGTATCTGGATGATCGCGAGAACCCGTCTTTTACTCTGACCCTTAATCCGAAGAAGAAA 482
Query 634 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 542
Query 694 ATCACTCTTGTCGATCCACTTGTGAAAAAATTCGGGACATTGGAGAAGCAGATCAAGATT 753
|||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 543 ATCACTCTCGTCGATCCACTTGTCAACAAATTTGGGACATTGGAGAAAAAGATCAAGATT 602
Query 754 CAGACAAATGGTAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATAAAGTG 813
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 CAGACGAATGGCAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATCAAGTG 662
Query 814 AAGACAACGGATAAGATGATATTTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 873
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 663 AAGACAACGGATAAGATGATGTGTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 722
Query 874 ACAATCAAGATTCACATTATCAGTGGATGA 903
||||||||||||||||||||||||||||||
Sbjct 723 ACAATCAAGATTCACATTATCAGTGGATGA 752
Score = 381 bits (206), Expect = 5e-105
Identities = 292/333 (88%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 2 TGGTACTACCCATTTCTTTCACCAGATTTTTACCAAAGTCTTTGCCTGAAACTGTAACTG 61
||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||
Sbjct 100 TGGTACTACCCATTTCTTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACTGTAACTG 159
Query 62 TTAGAAGCATTTCTGGAAATATTTGGAAATTGGAGTTAAAGAAATGTTGTGGTGATGATG 121
|||||||||||| |||||| |||||||||||| ||| | ||||||| || |||| | |
Sbjct 160 TTAGAAGCATTTATGGAAAGGTTTGGAAATTGGTGTTGAGGAAATGTGGTAGTGA--A-G 216
Query 122 ATACTGAGAAATTCGTTATGGTTAATGGGTGGAAGAGGATTGTGAAGGACGAAGATCTCA 181
| ||||| || |||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 217 -T--TGAGAGCTTTGTTATGGTTAATGGTTGGAAGAGCTTTGTGAAGGACGAAGATTTGA 273
Query 182 AGGGAGGAGATTTCTTAGAGTTTGAGTTTGATGGCTCTAGT-TGTTTCCATTTCTGTATC 240
|||||||||||||||| ||||||||||||||||||||| | | || | |||||||||||
Sbjct 274 AGGGAGGAGATTTCTTGGAGTTTGAGTTTGATGGCTCTCGGCTCTT-CAATTTCTGTATC 332
Query 241 TATGAGCATAGGACAATGTGTAAAAAGATAAGAAGAAGTTCAGATCAAAGCGAGGAGATC 300
|| |||||| ||||| ||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 333 TACGAGCATGGGACATTGTGTAAAAGGATAAGAAGAAGCTCAGAGCAAAGCGAGGAGATC 392
Query 301 AAAGTGGAATCTGATAGTGATGAACAAAATCAG 333
||| |||||||||||||||||||| ||||||||
Sbjct 393 AAAATGGAATCTGATAGTGATGAAAAAAATCAG 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5