BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60130.1 Length=903 Score E Sequences producing significant alignments: (Bits) Value Ahg950768 jgi|Araly1|950768|scaffold_802655.1 532 1e-150 > Ahg950768 jgi|Araly1|950768|scaffold_802655.1 Length=773 Score = 532 bits (288), Expect = 1e-150 Identities = 316/330 (96%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 574 CAGTATCTGGATGATCGTGAGAACCCATCTTTTACTCTGATCCTTAATCCGAAGAAGAAA 633 ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| Sbjct 423 CAGTATCTGGATGATCGCGAGAACCCGTCTTTTACTCTGACCCTTAATCCGAAGAAGAAA 482 Query 634 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 542 Query 694 ATCACTCTTGTCGATCCACTTGTGAAAAAATTCGGGACATTGGAGAAGCAGATCAAGATT 753 |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||| Sbjct 543 ATCACTCTCGTCGATCCACTTGTCAACAAATTTGGGACATTGGAGAAAAAGATCAAGATT 602 Query 754 CAGACAAATGGTAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATAAAGTG 813 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 603 CAGACGAATGGCAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATCAAGTG 662 Query 814 AAGACAACGGATAAGATGATATTTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 873 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 663 AAGACAACGGATAAGATGATGTGTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 722 Query 874 ACAATCAAGATTCACATTATCAGTGGATGA 903 |||||||||||||||||||||||||||||| Sbjct 723 ACAATCAAGATTCACATTATCAGTGGATGA 752 Score = 381 bits (206), Expect = 5e-105 Identities = 292/333 (88%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 2 TGGTACTACCCATTTCTTTCACCAGATTTTTACCAAAGTCTTTGCCTGAAACTGTAACTG 61 ||||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||| Sbjct 100 TGGTACTACCCATTTCTTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACTGTAACTG 159 Query 62 TTAGAAGCATTTCTGGAAATATTTGGAAATTGGAGTTAAAGAAATGTTGTGGTGATGATG 121 |||||||||||| |||||| |||||||||||| ||| | ||||||| || |||| | | Sbjct 160 TTAGAAGCATTTATGGAAAGGTTTGGAAATTGGTGTTGAGGAAATGTGGTAGTGA--A-G 216 Query 122 ATACTGAGAAATTCGTTATGGTTAATGGGTGGAAGAGGATTGTGAAGGACGAAGATCTCA 181 | ||||| || |||||||||||||| |||||||| ||||||||||||||||| | | Sbjct 217 -T--TGAGAGCTTTGTTATGGTTAATGGTTGGAAGAGCTTTGTGAAGGACGAAGATTTGA 273 Query 182 AGGGAGGAGATTTCTTAGAGTTTGAGTTTGATGGCTCTAGT-TGTTTCCATTTCTGTATC 240 |||||||||||||||| ||||||||||||||||||||| | | || | ||||||||||| Sbjct 274 AGGGAGGAGATTTCTTGGAGTTTGAGTTTGATGGCTCTCGGCTCTT-CAATTTCTGTATC 332 Query 241 TATGAGCATAGGACAATGTGTAAAAAGATAAGAAGAAGTTCAGATCAAAGCGAGGAGATC 300 || |||||| ||||| ||||||||| |||||||||||| ||||| ||||||||||||||| Sbjct 333 TACGAGCATGGGACATTGTGTAAAAGGATAAGAAGAAGCTCAGAGCAAAGCGAGGAGATC 392 Query 301 AAAGTGGAATCTGATAGTGATGAACAAAATCAG 333 ||| |||||||||||||||||||| |||||||| Sbjct 393 AAAATGGAATCTGATAGTGATGAAAAAAATCAG 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33471921126 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5