BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60140.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496153 jgi|Araly1|496153|fgenesh2_kg.8__1969__AT5G60140.1 710 0.0
Ahg950768 jgi|Araly1|950768|scaffold_802655.1 324 1e-87
> Ahg496153 jgi|Araly1|496153|fgenesh2_kg.8__1969__AT5G60140.1
Length=979
Score = 710 bits (384), Expect = 0.0
Identities = 579/667 (87%), Gaps = 38/667 (6%)
Strand=Plus/Plus
Query 1 ACATCTGGAAAAACTTGGATCTGGAGAAACT-TTGTTCACCTTTTTATTTCCGATCAAAA 59
||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1 ACATCTGGAAAAACTAGGATCTGGAGAAACTGTT-TTCACCTTTTTCTTTCCGATCAAAA 59
Query 60 TTAGGG-TTCAGAGTA-TTTCCAAGAGCACAAGAAGTTGACGACAATGAACACAAGAGGA 117
|||||| ||||||| | |||| ||||||||||||||||||||||||||||| | | |||
Sbjct 60 TTAGGGTTTCAGAG-AGTTTCTAAGAGCACAAGAAGTTGACGACAATGAAC-C-A-CGGA 115
Query 118 AATTACTCTAATGGTTTTACTTCAAAGTTCTTTAAACCGTACCTTCCTAGTGAATCCGGT 177
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AATTATTCGGATGGTTCTACTTCAAAGTTCTTTAAACCGTACCTTCCTAGTGAATCCGGA 175
Query 178 GATGATCTGGTACTACCCATTTCTTTCAACAGCTGTTTACCAAAGTCTTTGCCTAAAACT 237
|| |||||| | |||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 176 GACGATCTGATGCTACCCATTTATTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACT 235
Query 238 GTAACTGTTAGAAGCATTTCTGGAAACATTTGGAAATTAGG-GTTTAAGAAATGTGGTGG 296
|||| |||||||||||||| |||||| |||||||||| || ||| | ||||||||||||
Sbjct 236 GTAAATGTTAGAAGCATTTATGGAAAGGTTTGGAAATT-GGTGTTGAGGAAATGTGGTGG 294
Query 297 TGAGGTTGAGAGATTTGTTATGGTTAGTGGTTGGAAGAAGATTGTAAGGGACGAAAACCT 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 295 TGAGGTTGAGAGATTTGTTATGGTTAATGGTTGGAAGAAGATTGTAAGGGACGAAGATCT 354
Query 357 GAACGGTGGAGATCTCTTGTCATTTGAGTTTGATGGCTCTCAtttttttAATTTCTCTAT 416
||| ||||||||||||||| |||||||||||||||| |||| || ||| ||||| | |||
Sbjct 355 GAAAGGTGGAGATCTCTTGGCATTTGAGTTTGATGGGTCTCGTTGTTTCAATTTATGTAT 414
Query 417 CTTTGACCATGAGACTACGTGTAAGAGGCTTAAGAGAAGTTCAGAGCAAAGCAAGGACAT 476
|| || | |||||||| |||||||| ||||||||||||||||||||||||| |||| ||
Sbjct 415 CTACGAGCGTGAGACTATGTGTAAGAAGCTTAAGAGAAGTTCAGAGCAAAGCGAGGAGAT 474
Query 477 CATCAAAGTGGGATCTGATTGTGAAGAAGAATCTC-AGGCTAGTGATGATGTTATCGTTC 535
|||| |||||||||||||| ||||||||||| ||| || ||||||||||| | | |
Sbjct 475 CATCGAAGTGGGATCTGATGGTGAAGAAGAAACTCTAG-CTAGTGATGAT-T---C-T-- 526
Query 536 TTAATAGTGATGATTCTGACGATTCTGATAATGATTATTCTGTTGAGGATGATAATGTTG 595
| | | || |||||||||||||||| |||||||||||||| ||||||
Sbjct 527 ------G--A-----C-GA---TTCTGATAATGATTATGCTGTTGAGGATGATGATGTTG 569
Query 596 CTGAGGATGATGATGGTCTTGAGGATGAAG-TAGATGTTGAGGCTGAGGATGGTTATGAT 654
|||| ||||||||||||||||||||||||| | || |||||||||||||||| | |||||
Sbjct 570 CTGAAGATGATGATGGTCTTGAGGATGAAGAT-GAAGTTGAGGCTGAGGATGATGATGAT 628
Query 655 GCTAAGG 661
| |||||
Sbjct 629 GTTAAGG 635
Score = 520 bits (281), Expect = 1e-146
Identities = 397/451 (88%), Gaps = 16/451 (4%)
Strand=Plus/Plus
Query 644 ATGGTTATGATGCTAAGGATAG-tgatggt-cttgaggatgaagatgatgatgaggctga 701
||| ||||| || | ||||| | ||||| | | ||| ||||| |||| | ||||| |||
Sbjct 540 ATGATTATGCTGTTGAGGAT-GATGATGTTGC-TGAAGATGATGATGGTCTTGAGGATGA 597
Query 702 ggatg--gttatgatgctaaggatgatgatggtcttgaggatgaagatgatcttgaggat 759
|||| | | ||| ||| |||||||||||| | || ||| ||||||||| | || |||
Sbjct 598 AGATGAAG-T-TGAGGCTGAGGATGATGATGATGTTAAGGCTGAAGATGA-C--GATGAT 652
Query 760 gaggatgaCGAAAGGCGGTATCTGGATGATCACGAGAACCCGTACTTTACTATGACACTC 819
| |||||||||| | |||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 653 -A--ATGACGAAAGACAGTATCTGGATCATCACAACAACCCGTACTTTACTATGACACTC 709
Query 820 AATCCGAAGAAGAAGAGCCAATTGCACATACCGGCTCATGTCATAAGGGACTATGACTTA 879
|||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 710 AATCCGAAGAAGAAAAGCCAATTGCACATACCGGCTTATGTCATAAAGGACTATGACTTA 769
Query 880 ACCTTCCCGG-AGCGTATAACAGTCGTGGACGAAATGGGAGCATTGGAGAAAGCAATCAA 938
| |||||||| | |||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 770 AACTTCCCGGCA-CGTATAACAGTCATGGACCAATTGGGAGCATTGGAGAAAGCAATCAA 828
Query 939 GATTCAAAAGAATGGTTGCATCTTTGTCAAGGGATTTGGTAGTTTCATCAGAAGGAACAA 998
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 829 GATTCAAAAGAATGGCTCCATCTTTGTCAAGGGATTTGGTAGTGTCATCAGAAGGAACAA 888
Query 999 AATGAAGATGACTGACAAAATGATATGCGAGCTTAAGAGGACTGGAGGTAATCTGGTTCA 1058
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 889 AATGAAGATGACTGATAAAATGATATGCGAGCTTAAGAGGACTGGAAGTAATCTGGTTCA 948
Query 1059 CACCATCAAGGTCAAGATTATCAGCGGATGA 1089
||||||||| ||||| |||||||||||||||
Sbjct 949 CACCATCAAAGTCAACATTATCAGCGGATGA 979
> Ahg950768 jgi|Araly1|950768|scaffold_802655.1
Length=773
Score = 324 bits (175), Expect = 1e-87
Identities = 313/377 (83%), Gaps = 20/377 (5%)
Strand=Plus/Plus
Query 137 CTT-CAAAGTTCTTTAAACCGTACCTT-CCTAG-TGAATCCGGTGATGATCTGGTACTAC 193
||| |||| ||||| ||| ||| || ||| | ||||||||| ||||||||||||||||
Sbjct 51 CTTCCAAAATTCTTCAAAGTGTA-TTTACCT-GATGAATCCGGAGATGATCTGGTACTAC 108
Query 194 CCATTTCTTTCAACAGCTGTTTACCAAAGTCTTTGCCTAAAACTGTAACTGTTAGAAGCA 253
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 109 CCATTTCTTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACTGTAACTGTTAGAAGCA 168
Query 254 TTTCTGGAAACATTTGGAAATTAGG-GTTTAAGAAATGTGGTGGTGAGGTTGAGAGATTT 312
||| |||||| |||||||||| || ||| | |||||||||| |||| |||||||| |||
Sbjct 169 TTTATGGAAAGGTTTGGAAATT-GGTGTTGAGGAAATGTGGTAGTGAAGTTGAGAGCTTT 227
Query 313 GTTATGGTTAGTGGTTGGAAGAAGATT-GT-AAGGGACGAAAACCTGAACGGTGGAGATC 370
|||||||||| ||||||||||| | || || |||| ||||| | |||| || ||||||
Sbjct 228 GTTATGGTTAATGGTTGGAAGA-GCTTTGTGAAGG-ACGAAGATTTGAAGGGAGGAGATT 285
Query 371 TCTTGTCA-TTTGAGTTTGATGGCTCTCAtttttttAATTTCTCTATCTTTGACCATGAG 429
||||| | ||||||||||||||||||| | || ||||||| ||||| || |||| |
Sbjct 286 TCTTGG-AGTTTGAGTTTGATGGCTCTCGGCTCTTCAATTTCTGTATCTACGAGCATGGG 344
Query 430 AC-TACGTGTAAGAGGCTTAAGA-GAAGTTCAGAGCAAAGCAAGGACATCATCAAAGTGG 487
|| | |||||| ||| | |||| |||| |||||||||||| |||| |||| ||| |||
Sbjct 345 ACATT-GTGTAAAAGGAT-AAGAAGAAGCTCAGAGCAAAGCGAGGAGATCA--AAA-TGG 399
Query 488 GATCTGATTGTGAAGAA 504
||||||| |||| |||
Sbjct 400 AATCTGATAGTGATGAA 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5