BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60142.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950770 jgi|Araly1|950770|scaffold_802657.1 508 3e-143
> Ahg950770 jgi|Araly1|950770|scaffold_802657.1
Length=710
Score = 508 bits (275), Expect = 3e-143
Identities = 344/377 (91%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 78 GTTAGGGTTTCAAAGAGGTGAAGATGATGAACAGAGGAATTTCTGTGGATGATTGTCTTC 137
|||||||||||||||||||| | | |||||||||||||| ||||| || | |||||||||
Sbjct 2 GTTAGGGTTTCAAAGAGGTG-A-A-GATGAACAGAGGAAATTCTGGGGGTAATTGTCTTC 58
Query 138 CAAAGTTCTTCAAAGTGTACTTACCTGATGATTCCGGAGATGATTTGGAATTACCCATCT 197
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 59 CAAAGTTCTTCAAAGTGTACTTACCTGATGAATCCGGAGATGATCTGGAATTACCCATCT 118
Query 198 CTTTCAACAGCTTTTTACCAAAGTCGTTGCCTAAAAATGTAATTGTTAGAAGCATTTATG 257
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 CTTTCAACAGCTTTTTACCAAAGTCGTTGCCTAAAAATGTAATTGTTAGAAGTATTTATG 178
Query 258 GAAACATCTGGAAAGTGGCGTTTAGGAAGTTTTGTGGTGATAGT-GAGAGATTTGTTATG 316
||||||| |||||| ||||| ||| ||||| ||||||| || || ||||||||| ||||
Sbjct 179 GAAACATTTGGAAAATGGCGCTTAAGAAGTGTTGTGGTCAT-GTTGAGAGATTTACTATG 237
Query 317 GTTAATGGGTGGAAGAAGATAGTCAAGGACGAAGATTTGAAAGGTGGAGAGTTCTTAGAA 376
|||||||||||||||||||| | ||||||||| || |||| |||||||||||||| ||
Sbjct 238 GTTAATGGGTGGAAGAAGATTTTAAAGGACGAAAATCTGAAGGGTGGAGAGTTCTTGGAG 297
Query 377 TTTGAGTTTGATGGCTCTTGGTGTTTCAATTTCTGTATCTATGGTCGTGCAACGTGTAAA 436
||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||
Sbjct 298 TTTGAGTTTGATGGCTCTTGGTGTTTCAACTTCTGTATCTACGGCCGTGCAACGTTTAAA 357
Query 437 AGGCTTAGAAGTTCAGT 453
| |||||||||||||||
Sbjct 358 AAGCTTAGAAGTTCAGT 374
Score = 490 bits (265), Expect = 1e-137
Identities = 302/320 (94%), Gaps = 1/320 (0%)
Strand=Plus/Plus
Query 823 CAG-ACAATATCTGGATAATCACATGAACCCTTTCTTTACAGTGAACCAGCATCGGCAAA 881
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAGTACACTATCTGGATAATCACATGAACCCTTTCTTTACAGTGAACCAGCATCGGCAAA 430
Query 882 TAAAATATAATATGCTGCGCATACCAACTAAGGTCATAACGAAGTATGGCTTACACTTCC 941
||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 431 TAAAATACAATCTGCTGCGCATACCAACTAAGGTCATAACTAAGTCTGGCTTACACTTCC 490
Query 942 CTGAGTTCATCAATTTGATTGATCCACTCGAGAAAAACTTTGGTAAATTGAAGAGGAAAG 1001
|||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 491 CTGAGTTCATCAATCTGATTGATCCACTCGAGAAAATGTTCGGTAAGTTGAAGAGGAAAG 550
Query 1002 TTAAGGGTCAAACAATCAAGGGATTCCGTAGTATAATCAGAAGGAATAATGTGAAGTTGA 1061
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTGAGGGTCAAACAATCAAGGGATTCCGTAGTATAATCAGAAGGAATAATGTGAAGTTGA 610
Query 1062 ATGACAAGGTGATTTGTGAGTTAGAAAAGGAGATGGATGGTCTTGTTCGAGAAATCAAGG 1121
||| || |||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 611 CTGATAAAGTGATTTGTGAGTTAGTAAAGGAGATGGATGGTCTGGTTCGCGAAATCAAGG 670
Query 1122 TCCATGTTATAAGAGGATGA 1141
||||||||||||||||||||
Sbjct 671 TCCATGTTATAAGAGGATGA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5