BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60150.1 Length=3938 Score E Sequences producing significant alignments: (Bits) Value Ahg950771 jgi|Araly1|950771|scaffold_802658.1 3467 0.0 > Ahg950771 jgi|Araly1|950771|scaffold_802658.1 Length=3582 Score = 3467 bits (1877), Expect = 0.0 Identities = 2241/2419 (93%), Gaps = 16/2419 (1%) Strand=Plus/Plus Query 210 GCTCGAAAGAGAAGCTAGAAATGGATAAGGATCTCTTAGATATCTCTGGAGAAGACGACG 269 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3 GCTCGAAAGAGAAGCCAGAAATGGACAAGGATCTCTTAGATATCTCTGGAGAAGACGACG 62 Query 270 AAGATAATTGGCTTCTGAAGAATACGCCGAAGAAAACTAATTCGAGCCGAGGAAAGAGTT 329 ||||||||||||||||||| ||||||||||||||| | ||||| | |||| |||||||| Sbjct 63 AAGATAATTGGCTTCTGAAAAATACGCCGAAGAAAGTTCATTCGGGACGAGAAAAGAGTT 122 Query 330 ATTTGAAATGCTCACCTCTCCAAATCCCTAGATCTAGTCGTATCGTTCCTACTCGGCCTC 389 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 123 ATTTGAATTGCTCGCCTCTCCAAATCCCTAGATCTAGTCGTATCGTTCCTACTCGGCCCC 182 Query 390 CTTTTTCCCCAATTGGAAGAGTAACAGGCACCAGCAACAACAGGGAGCAGCCATGCGCTT 449 ||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||| Sbjct 183 CTTTTTCACCAATTGGAAGAGTAACTGGTACCAGCAACAACATGGAGCAGCCATGCGCTT 242 Query 450 CAGTTGATACAGATAGTGTAGGAAAGGAGAATGCTAAAGTTGAATTGCCCAAATTGAGTG 509 | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 243 CTGTTGATACAGATAGTGTTGGAAAGGAGAATTCTAAAGTTGAATTGCCCAAATTGAGTG 302 Query 510 TGGAGCGACAACAGATGAAGAAGAAGAAAAAGAATGCAGGGTTTAATTTGCGCAAGAGTT 569 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 303 TGGAGCGACAACAGATGAAGAAGAAGAAAAAGAATGCAGGATTTAATTTGCGCAAAAGTT 362 Query 570 TAGCATGGGATAGAGCTTTTTCAACGGAAGAAGGTGTTTTGGATTCATCTGAGTTATCTA 629 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 363 TAGCATGGGATCGAGCTTTTTCAACGGAAGAAGGTGTTTTGGATTCATCTGAGCTATCTA 422 Query 630 AAATAACTGGAACTGCTTGCC-ATCTTGGTGGAGATCGGTTAGCTGCCATTCAGGAAGAG 688 ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 423 AAATAACTGGAACTGCTTGCCAAT-TTGGTGGAGATCGGTTACCTGCCATTCAGGAAGAG 481 Query 689 TACAGAGAGTCAATGTCAGCTTCCAAATGTA--A-TGTTTCACCAGGACTACAAGCACTT 745 | ||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 482 TTCAGGGAGTCAATGTCAGCTTCTAAATGTACTAGTGTTTCACCAGGACTACAAGCACTT 541 Query 746 GAAGAAAACTTATTTAACGACTTGCCTGTGAATAGTAAAAACAGAGAGAAGAAGCTTGTC 805 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 542 GAAGAAAACTTATTTAACGACTTGCCTGTGAATAGTAAAAACAGAGAGAAGAAGCTTCTG 601 Query 806 AGTGGCATAATG-CCCAAGGAGCTGAGCATATCTAAAGTTCCTACTACCAAATCTGACCC 864 ||| |||| | | || |||||||||||||||||||||||||||||||||| |||| || Sbjct 602 AGT-GCATCACGTAGCAGGGAGCTGAGCATATCTAAAGTTCCTACTACCAAACCTGAGCC 660 Query 865 AGTTACAGTTGGAAACAACATGAAAAGGACTACTCAAAGTCCAATCAAAGCGAAAAACAG 924 | ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| || Sbjct 661 ACTTACAGTTGCAAACAACATGAAAAGGACTACGCAAAGTCCAAGCAAAGCGAAAAAAAG 720 Query 925 TCAACCTACTCAATTAAAGAATTCTCAGAGGAGCTTAGGATCTGAAAGCTTCTCTAAAAA 984 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 721 TCAACCTACTCAACTAAAGAATTCTCAGAGGAGCTTAGGATCTGAAGGCTTCTCTAAAAA 780 Query 985 CACTTCAAGCACCAAGAGTAAAACAAAATCCAGTCTGGCGAGTAAATCTTCAATTCCTAA 1044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CACTTCAAGCACCAAGAGTAAAACAAAATCCAGTCTGGCGAGTAAATCTTCAATTCCTAA 840 Query 1045 GCCCTCTCTTAAGCAAGCTAGAAGAAATGTGATCAGCAAATCTTCAGAAATTCCGACAGT 1104 |||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 841 GCCCTCTCTTAAGCAAGCTAGAAGAAATGTGATCAGCAAAACATCAGAAATTCCTTCAGT 900 Query 1105 ATC-ATACTCACAGCATTCTGTTGTTGCAAAATCCAACGTTGGCCCTATGACTGCATCAG 1163 ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 901 ATCCA-ACTCACAGCATTCTGTTGTTGCAAAGTCCAACGTTGGCCCTATGACTGCGTCAG 959 Query 1164 ATGTGGCTATGCTTGGTCATGCATCAGTTATTCCAGACTCTAATGTAATTACTCTGGGCA 1223 ||||||||||| |||||| |||||| | ||||||||| || ||||||||||||||||| | Sbjct 960 ATGTGGCTATGTTTGGTCCTGCATCGGATATTCCAGAGTCCAATGTAATTACTCTGGGAA 1019 Query 1224 CCTCGTTAGCTCAAAGTTCTTGCAATAAAGCT-GGAAGCACGCAGTCCGCAGTTTCACGA 1282 |||||||| |||||||||||||||||| | || |||| |||||||||||||||||||||| Sbjct 1020 CCTCGTTAACTCAAAGTTCTTGCAATAGA-CTTGGAAACACGCAGTCCGCAGTTTCACGA 1078 Query 1283 CTGGGAAAGCCATCAGGCTTAAGAGCGCCAAAACCTTCAATTGGCTATTTCAGTCAGTCT 1342 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1079 CTGGGAAAGCCATCAGGCTTAAGAGTGCCAAAACCTTCAATTGGCTATTTCAGTCAGTCT 1138 Query 1343 GACTCTCAACCGTCGCAGAGTGCGGGAGACAAACACAGTCAGCTTCCCAGATCTGATGTT 1402 |||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1139 GACTCTCAACTGTCGCACAGTGCAGGAGACAAACATAGTCAGCTTCCCAGATCTGATGTT 1198 Query 1403 TGTTCAGCCGCTCATTTTTCTTTGATCCCTACCTTCAAGAAACCCCAAGTTGCTGAAAAG 1462 | ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1199 TCTTCAGCCTCTCATATTTCTTTGATCCCTACCTTCAAGAAACCTCAAGTTGCTGAAAAG 1258 Query 1463 TTTCCCGGTGTCAACTGCAAGGCAGCAACTGGAATTTTTGGCAGTTCAGATTCAGCTGCA 1522 |||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1259 CTTCCTGGTGTCAAATCCAAGGCAGCAACTGGAATTTTTGGCAGTTCAGGTTCAGCTGCA 1318 Query 1523 AGATTCTCTGCTCAATCTATATGTCTCAAACCTTCACAGGAAAAGTTGAAAGTGGACTTG 1582 |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| Sbjct 1319 AGATTCTCTGCTCAATCTATATGTCTCAAATCTTCACAAGAAAAGGTGAAAGTGGACTTG 1378 Query 1583 AATAGCACACAGGAAGTAGAATCCAAAGTGTTGCGTTGTCCATTGAGTTTTCAGATAAAT 1642 |||||||| ||| || |||||||||| | |||| ||||| || |||||| |||||||||| Sbjct 1379 AATAGCACTCAGAAATTAGAATCCAATGCGTTGTGTTGTTCACTGAGTTCTCAGATAAAT 1438 Query 1643 GAAAATCCGCAGCACCAA-TGTGTCATTCAAGGTGATACTGGAAATTTAGTTCTGGATGA 1701 ||||||| |||||||||| | || ||||||||||||||||||||| || |||||||||| Sbjct 1439 GAAAATCTGCAGCACCAAAT-TGCCATTCAAGGTGATACTGGAAAAGTACTTCTGGATGA 1497 Query 1702 TGTAACTTATTGCACATCTGAGAAGATTTCTACTGAACAATGTCAAGAATTCCAGGGTAA 1761 |||||||||||| ||||||||||||| |||||||| ||| |||||||||||||| |||| Sbjct 1498 TGTAACTTATTGTACATCTGAGAAGAATTCTACTG--CAA-GTCAAGAATTCCAGAGTAA 1554 Query 1762 CAGTGCGCTGCCGCCCTCAGGCTGCAAAAATAATGTACAAGATGGTAGTAATATGTCTGA 1821 || || ||| |||| ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1555 CAATGAGCTACCGCTCTCAGGCTGCAAAAATAATGTGCAGGATGGTAGTAATATGTCTGA 1614 Query 1822 CGATAATAGAGATGAGAAAAGGAAGTCTTGCCTCTCAGTAGAAGAATACTGTGCTTTACC 1881 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1615 CCATAATAGAGATGAGAAAAGGAAGTCTTGCCGCTCAGTAGAAGAATACTGTGCTTTACC 1674 Query 1882 AATGAAAGATTCTATGGATTCTACGATGCAGGGTCCTCCTTGCGATGAGTTGACACTGTT 1941 ||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||| Sbjct 1675 GCTGAAAGATTCTGTGGATTCTCCAATGCAGGGTCCTCCTTCCGATGAGTTGACACTGTT 1734 Query 1942 TGACAACTACTCACAGTTGAAAGTCAGCAATCCGGGGGAAGAAGATATGTGTACTACCAA 2001 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1735 TGATACCTACTCACAGTTGAAAGTCAGCAATCCGGGGGAAGAAGATATGTGTACTACCAA 1794 Query 2002 TGATTTTAGTGGAGATTCTGATACATTGGATGTACCTGGACAACCTCTAAATGAATGCCT 2061 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | Sbjct 1795 TGATTTTAGTGGAGATTTTGATACATTGGATGTACATGGACAACCTCTAAATGAATGCGT 1854 Query 2062 GCACCCTGGAAACGAAGACGAGATTAGTCCTTGCCTTTCTGAAGAAAAAGATGCGTTAGT 2121 |||||||||||| |||||||||||||||||||||||||||| ||| | ||||| ||| | Sbjct 1855 GCACCCTGGAAATGAAGACGAGATTAGTCCTTGCCTTTCTGGTGAAGATGATGCTTTAAT 1914 Query 2122 TGTTTATCATTCTACTGAATATGTAGCAAAGCAGCCTGAGGTTTTGGATTCCTTCACTGC 2181 ||| |||||||||||| || ||||||||||||||||||||||||| ||||| |||| || Sbjct 1915 TGTGTATCATTCTACTAAAAATGTAGCAAAGCAGCCTGAGGTTTTATATTCCGTCACCGC 1974 Query 2182 AAAATCATCTTTCTTTGGGGATTTGGCTTCAATAAAGGGTGATGCAGACAATCCATCTTC 2241 | | || ||||||||| ||||| ||||||||||||||||||| |||||||| |||||| Sbjct 1975 AGACCCAACTTTCTTTGAAGATTTTGCTTCAATAAAGGGTGATGTAGACAATCTATCTTC 2034 Query 2242 TTCAGAAAATCAGTTAGGTAATACTGAATTTGTTTCTGTACCTTTGGAGCCTTCTGAAGC 2301 ||||||||||| ||||||||||||| ||| |||||| ||||||||| |||||||||||| Sbjct 2035 TTCAGAAAATCGGTTAGGTAATACTAAATATGTTTCCATACCTTTGGGGCCTTCTGAAGC 2094 Query 2302 ACTAGATTGTGTTCAATCACTATGCAATCATCTTGAGGTAAATGCGGTAGCGAACTCTGT 2361 || ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||| | Sbjct 2095 ACCAGAATGTGTTCAATCACCATGCAATCATCTTGAGGAAAATGCGGTGGCGAACTCTAT 2154 Query 2362 TTTGTGTGATCATAACATGGTGTGTGATGGTCAATCTGTATTAGAAACGGAGAAGAGAAT 2421 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2155 TTTGTGTGATCATAACATGGTGTGTGATGGTCAAGCTGTATTAGAAACGGAGAAGAGAAT 2214 Query 2422 TGAAATAAGCGAAAGCACAGAGAAAAACTATGAGACTGATTTCATTGGTCCATTTTCCGA 2481 |||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||| Sbjct 2215 AGAAATAAGCGAAAGCACAGAGACAAACTGTGAGGCTGATTTCATTGGTCCAAGTTCCGA 2274 Query 2482 ATGCAAATACTGGTTTAGAGAATCTGAAGAGCAACATTTGTCGAACCAATTAGTCCTTGA 2541 ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2275 ATGCAAAGACTGGTTTAGAGAATCTGAAGAACAACATTTGTCGAGCCAATTAGTCCTTGA 2334 Query 2542 GGTGAAAGAGGGTGGTCATGAGATAGATGTCTTGATCAGAAACGAAGAAGCTGATGGGCC 2601 |||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| Sbjct 2335 GGTGAAAGAGGGTGGTCATGAGTTCGATGTCTTGATCAGAAACGAAGGAGCTGATGGGCC 2394 Query 2602 TGATATGCAGATAGAATGC 2620 || ||||||||||||||| Sbjct 2395 TGGCATGCAGATAGAATGC 2413 Score = 1716 bits (929), Expect = 0.0 Identities = 1094/1174 (93%), Gaps = 10/1174 (1%) Strand=Plus/Plus Query 2671 GCCTTCC-TCCGTTGAAGTTACGATGGAGATTAAACCTCTGGAATCATCTCATGAACCCT 2729 ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 2412 GCCTTCCACCCGTTGAAGTTAGGATGGAGATTAACCCTCTGGAATCATCTCATGAACCCT 2471 Query 2730 TCTCTGAGAAATCAACTTCTGAAAAACAGAAGCAATACAATTGTTCCAGCAGTGAAAATA 2789 ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| Sbjct 2472 TCTCTGAGAAATCAACTCCTGAAAAGCAGAAGCAACACAATTGTTCCAGCAGTGAAAATA 2531 Query 2790 CATCTGATGTAAATGATGGTTGTGTAATGAAACAGGCTGATCAACTTGGAACATTAGTTG 2849 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 2532 CATCTGATGTAAATGATGGTTGTGTAATGAAACAAGCGGATCAACTTGGAACATTAGTTG 2591 Query 2850 GTTGTTCTCCAGAAAAAGATGCATCTGT-TGCGGTTTTCTCTTATTCAAATGAGGAGCTT 2908 ||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| Sbjct 2592 GTTGTTCTCCAGAAAAAGACGCATCT-TCTGCTGTTTTCTCTTATTCAAATGAGGAGCTT 2650 Query 2909 GGAGATAACTCTGAGCTGGAAGACATGGATTTGGTTACAGACTCAGATTGTTCAGATGAG 2968 | |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2651 GAAGATTACTCTGAGCTGGAAGACATGGATTTGGGTACAGACTCAGATTGTTCAGATGAG 2710 Query 2969 GAGCCTGAGGATAAATTGGAGCGGACAGAGGTGGATGTGGTTACTGATCCAGAGCTCATT 3028 ||| |||||||||| ||||||||||||||| || || |||||||||||| | ||||||| Sbjct 2711 GAGGCTGAGGATAATTTGGAGCGGACAGAGATGCTTGGGGTTACTGATCCTGTGCTCATT 2770 Query 3029 AGTGGCCTTGATGAGTTTTCTGTCAAGGGCGTCCGTAATCAAGAATATCCGGAAGTAGAA 3088 |||| ||||||||||||||||||||||||| | | ||||||||||||||| ||| |||| Sbjct 2771 AGTGACCTTGATGAGTTTTCTGTCAAGGGCATTCTTAATCAAGAATATCCCCAAGAAGAA 2830 Query 3089 GATATCCAAACTGCATCAGACCTTTGTGGAAAAACTAAAACTCTACTAAGTGAATCAGTC 3148 |||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||| || Sbjct 2831 GATATCCATACTGCATCAGACCTGTGTGGAAAAACTAAAAATCTACTACGTGAATCAATC 2890 Query 3149 AGTTCCTCGGATTCTATATTTGGAGTTCCTGAGTGTCTAAATGAGGGCACAAACTTTTCC 3208 ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| Sbjct 2891 AGTTCCTCGGATTCTATATTTGGAGATCCTGAGTGTCTAAATGAAGGCACAAATTTTTCC 2950 Query 3209 AGAATCTCTGAAGGCATGTCAAAAGAGGATTCAAATTCTGGACGTATTGAGCATAACTAT 3268 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2951 AGAATCTCTGAAGACATGTCAAAAGAGGATTCAAATTCTGGACGTATTGAGCATAAATAT 3010 Query 3269 GTTGTAAAAGCTGAATTCCAGGTAGATGCTGAAAAGGATTTCAGTGCACAGGTTACTGGT 3328 |||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| Sbjct 3011 GTTGTAAAAGCTGAATACCAGATAGAAGCTGAAAAAAATTTCAGTGCACAGGTTACTGGT 3070 Query 3329 CAAGAACTCGTCCCCAATGAAGGAGATGAAGTTAAAGTTGTAAAGATCTCTCCTGATCCT 3388 ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||| Sbjct 3071 CAAGAACTCGTCCCCGATGAGGGAAAGGAAGTTAAAGTTGTAAAGATCTCTCCTGATCCT 3130 Query 3389 GTA-TCATTTGCGCCCAGAGAGGAAGAACT-AGGAACTCCAATACCCATGAAGGAGACTA 3446 ||| | |||||||| ||||||||||||| | ||||||||| ||||||| || |||||| Sbjct 3131 GTAGT-ATTTGCGCTCAGAGAGGAAGAA-TCAGGAACTCCTATACCCACAAAAGAGACTT 3188 Query 3447 TCTCAGGCAGAGATGATATGCAGATTAACGAGTTCAATGTACTCAGCGATGACATTTTGA 3506 |||||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||| Sbjct 3189 TCTCAGTCAGAGATGATATGCAGATTAGCGAGTTCAATGTACTCTGCGATGACAGTTTGA 3248 Query 3507 CATCAGAAAGCAATGCATCAGAAGGCAATGACAAGATGATACTACTGGATGCTAAACTTG 3566 ||||||||| |||||||||||||||||| || |||||||||||||||||| | ||||||| Sbjct 3249 CATCAGAAACCAATGCATCAGAAGGCAAGGAGAAGATGATACTACTGGATACGAAACTTG 3308 Query 3567 AGAAGAAACCTGATCCAATAATTGTGAAGCCTCCAAATGCTGTTCCATTTTCTGACGAGT 3626 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3309 AGAAGAAACCTGATCCTATAATTGTAAAGCCTCCAAATGCTGTTCCATTTTCTGATGAGT 3368 Query 3627 GGTTAGCTGCAATTGAGGCTGCTGGGGAGGAAATTTTAACACTGAAAAGTGGACGTGTGC 3686 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 3369 GGTTAGCTGCAATTGAGGCTGCTGGGGGGGAAATCTTAACACTGAAAAGTGGACGTGTGC 3428 Query 3687 AACATTCACCAACCGAGAAATCTGCTCCTGAACCAGGTCCATGGTCTCCGGTC---AAGA 3743 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 3429 AACATTCACCAACCGAGAAATCTGCTCCTGAACCAGGTCCTTGGTCTCCGGTCAAGAAGA 3488 Query 3744 AGAGCAACCAAGTTGTAGGACCATTTGACTGTACAAAGTATAATAACAAAGGTCTTCCTC 3803 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3489 AGAGCAATCAAGTTGTAGGGCCATTTGACTGTACAAAGTATAATAACAAAGGTCTTCCTC 3548 Query 3804 CTGCTTTTGACTGAAGAAAACTAGGTTTCTTCTA 3837 |||||||||||||||||||||||||||||||||| Sbjct 3549 CTGCTTTTGACTGAAGAAAACTAGGTTTCTTCTA 3582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 148843168003 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5