BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60170.2
Length=3509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358235 jgi|Araly1|358235|fgenesh1_pg.C_scaffold_8002022 2837 0.0
Ahg484947 jgi|Araly1|484947|fgenesh2_kg.5__939__AT3G45630.1 1129 0.0
> Ahg358235 jgi|Araly1|358235|fgenesh1_pg.C_scaffold_8002022
Length=3006
Score = 2837 bits (1536), Expect = 0.0
Identities = 1702/1784 (95%), Gaps = 4/1784 (0%)
Strand=Plus/Plus
Query 145 ATGAGTGACCATGGTGAGAAGACTTGTCCACTTTGTGCTGAAGAGATGGATCTGACTGAT 204
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1 ATGAGTGACCATGGAGAGAAGACTTGTCCACTGTGTGCTGAAGAGATGGATCTGACCGAT 60
Query 205 CAACAATTGAAGCCTTGCAAATGTGGTTATCAGATTTGTGTTTGGTGCTGGCATCACATA 264
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CAACAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCATCACATA 120
Query 265 GTGGACATGGCAGAGAAAGATCAAATAGAAGGGCGTTGTCCAGCTTGTCGCACTCCATAT 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GTGGACATGGCAGAGAAAGATCAAATAGAAGGGCGTTGTCCAGCTTGTCGCACTCCCTAT 180
Query 325 GACAAAGAAAAGATTGTAGGGATGACTGTTAATTGTGACAGTCTGGCTTCTGAAGGCAAT 384
||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 181 GACAAAGAAAAAATTGTAGGGATGACTGTTGATTGCGACAGTCTGGCCTCTGAAGGCAAT 240
Query 385 ATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAATCTTCTGAAGGGAGAAAGCAACAA 444
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAACCTTCTGAAGGGAGAAAGCAACAA 300
Query 445 CTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTTTACATTGTTGGGTTGCCTCTTAAT 504
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTCTACATTGTTGGGTTGCCTCTTAAT 360
Query 505 CTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTCTA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTCTA 420
Query 565 AAGGTTTCCATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAACAATACATGC 624
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AAGGTTTCGATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAATAATACATGC 480
Query 625 AGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAAGCTGTTCAT 684
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAGGCTGTTCAT 540
Query 685 GGGTTTATCTTGGATGGTAAACCATTGAAGGCATGTTTTGGGACAACCAAGTATTGTCAT 744
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 541 GGGTTTATCTTGGATGGTAAACCACTGAAGGCGTGTTTTGGGACAACCAAATATTGTCAT 600
Query 745 GCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTCTATTTGCACGAGGTTGGT 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTGTATTTGCACGAGGTTGGT 660
Query 805 TCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTAGAGTT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTAGAGTT 720
Query 865 CAACAAATCACTGGAGCAACAAATATTCTGCAGCACCATTCAGGGAACATGCTACCTCCA 924
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 721 CAACAAATCACTGGAGCAACAAATATTCTGCAGCACCGTTCAGGGAGCATGCTACCTCCA 780
Query 925 CCACTGGATGCTTATTGCAGTGACAGTTCTTCTGCAAAACCAATTATAAAGGTTCCTTCA 984
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 CCACTGGATGCTTATTGCAGTGACAGTTCCTCTGCAAAACCAATTATAAAGGTTCCTTCA 840
Query 985 ACTAATGCAACTAGTGTTCCCAGGTATTCTCCGCCAAGTGGGAGTGGGAGCTCCAGCAGA 1044
|||| |||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 841 ACTAGTGCAACAAGTGTTCCCAGGTATTCTCCGCCTAGTGAGAGTGGGAGCTCTAGCAGA 900
Query 1045 TCCACTGCCCTTCCTGCTGCAGCGTCATGGGGGACACATCAGTCTTTAGCAACTTCGGTC 1104
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TCCACTGCTCTTCCTGCTGCAGCGTCATGGGGGACACATCAGTCTTTAGCAACTTCAGTT 960
Query 1105 ACCTCAAATGGATCTTCTGATATACAAAGATCAACATCAGTGAATGGAACCTTACCCTTT 1164
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 ACCTCAAATGGATCTTCTCATATACAAAGATCAACATCAGTAAATGGAACCTTACCCTTT 1020
Query 1165 TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATCCTCTAATGACATTCTTAAAAGA 1224
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1021 TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATCCTCCAGTGACATTCTTAAAAGA 1080
Query 1225 CCATCTCGCAAAGAAGAAAGCCAAATAGTTATGGACAAAGTCAAACCTAGTGTGTTGAAG 1284
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1081 CCATCTCGCAAAGAAGAAAGCCAAATGGTTATGGACAAAGTCAAAACTAGCGTGTTGAAG 1140
Query 1285 CCCTTGCAGCATAATGTTGTGGTTTCTGGGTCCGAGAGAATTACCGCACCCGATAGAGAT 1344
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct 1141 CCCTTGCAGCATAATGTTGTGGTTTCTGGGTCCGAGAGAACTACCTCACCTGATAGAGAT 1200
Query 1345 CCTACTAGCAATCGTTTATCCAGTTCAGTAGACTCTGCCTACGGAGGCAGAGACATTGAC 1404
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1201 CCTACTAGCAATCGTTTATCCAGTTCAGTAGACTCTTCCTACGGTGGCAGAGACATTGAC 1260
Query 1405 CAGCCTTCAGCCTACAGTGGCAGAGACATTGACAAGCCTTCATCTACTGTTAGCTCGTTT 1464
|||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |
Sbjct 1261 CAGCCTTCAGCCTACAGTGGCAGAGACATTGACAAGCCTTCAGCTACTGTGAACTCGTCT 1320
Query 1465 GATGCTGCAAATGAAGCTGTAGAAGATGTCCCTACTGTA-AGCAACTTGTTGGATGGTGT 1523
|||| || |||||||||||||||||||| |||||||||| | |||||||| ||| |||||
Sbjct 1321 GATGATGTAAATGAAGCTGTAGAAGATGGCCCTACTGTACA-CAACTTGTCGGACGGTGT 1379
Query 1524 TGCATGCATGCGGATAACTATGAATTGTAGGGATGAACGTCCTGATATTACAATGGCGAT 1583
|||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1380 TGCACGCATGGGGATAACTGTGAAATGTAGGGATGAACGTCCTGATATTACAATGGCGAT 1439
Query 1584 TGGTAGTCAAAGTGATCAAGGTTCTATTAGACAACCTGGTTC-TGAAGTATCAAAGTTGC 1642
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1440 TGGTAGTCAGTGTGATCAAGGTTCTATTAGACAACCTGGT-CATGAAGTATCAAAGTTGC 1498
Query 1643 CAGATTTAGAGCAATGTAGGATAGATAGTTCTATAAACACTGATAAGAAAGCTATCTCGT 1702
|| |||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1499 CACATTTAGAGAAATGTAGGATGGATAGTTCTATAGACACTGATAAGAAAGCTATCCCGT 1558
Query 1703 TAGAGGATAGGATCCCCCGCACTAGGCCAGGGTGGGATTGGATATCAGATTTGCAATCGC 1762
||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1559 TAGAGGATAGGGTCCCCCGCACAAGGCCAGAGTGGGATTGGAGATCAGATTTGCAATCGC 1618
Query 1763 AAATGCAAGGAAGCTCTAAATTGCAAGTGGAGGATATATCAACATTGGATAGCCAACGGC 1822
| |||||||||||||| |||||||||| |||||| |||| | |||| || ||||||| ||
Sbjct 1619 ATATGCAAGGAAGCTCAAAATTGCAAGAGGAGGAAATATTATCATTTGACAGCCAACAGC 1678
Query 1823 CTCACCCTGAAGAGGATATTATCCACTCGCGGTTGCTGTCTAATTTGTCAAGTTCCAGTT 1882
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1679 ATCACCCTGAAGAGGATATTATCCACTCGCGGTTTCTGTCTAATTTGCCAAGTTCCAGTT 1738
Query 1883 TGGATACAAATCATATGGCTTCTCGTTCTTCCCTACCTTGTGAA 1926
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1739 TGGATACAAATCATATGGCTTCTCGTTCTTCCCTGCCTTGTGAA 1782
Score = 1783 bits (965), Expect = 0.0
Identities = 1118/1190 (94%), Gaps = 17/1190 (1%)
Strand=Plus/Plus
Query 1929 TAGGGGCAGTGATAGATTGCATCTTCCAAATGGATTTGGTGAGAAATCCATGTCCAGTGT 1988
||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1824 TAGAGGCAGTGATAGATTGCATCTTCCAAATGGATTTGGTGAGAGATCCATATCCAGTGT 1883
Query 1989 GGAGCACTCTCTGTTCGCAAATGAAGGCAGGAACAAAGTCAACAATGCAGAGGATGCTAT 2048
|||||| |||||||| || ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1884 GGAGCATTCTCTGTTTGCTAATGAAGACAGGAACAAAGTCAACAATGTAGAGGATCCTAT 1943
Query 2049 ACTTTCAAACATTTTGTCACTCGATTTTGATCCATGGGATGAATCCTTGACTTCTCCCCA 2108
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 ACTTTCGAACATTTTGTCACTCGATTTTGATCCATGGGATGAATCCTTGACTTCTCCCCA 2003
Query 2109 CAATTTGGCAGAGTTACTAGGTGAAGTTGATCAGCGATCTAGTACTCTTAAACCTTCAAA 2168
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2004 CAATTTGGCAGAGTTACTCGGTGAAGTTGATCAGCAATCTAGTACTCTTAAACCTTCAAA 2063
Query 2169 CTTCCTAAAGCAACATAACAACCAGTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAG 2228
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 CCTCCTAAAGCAACATAACAACCAGTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAG 2123
Query 2229 TAATCAAGCATATGACAGTGAGAAC-TATAGCATTTATGGGCAGTTGTCAAGAGATAAAC 2287
||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||| |||
Sbjct 2124 TAATCAAGCATATGACAGTGAGAACCT-TAGCACTTATGGGCAGTTTTCAAGAGATCAAC 2182
Query 2288 CTATTCAGGAGTCTGCCA-TGAGCCGAGATATCTATCGAAATAACCTTGGGAGTGTAAAT 2346
||||||||||||| | | ||||||||||||||||||||||||| || ||||| |||||
Sbjct 2183 CTATTCAGGAGTCAGT-AGTGAGCCGAGATATCTATCGAAATAATCTCGGGAGCCTAAAT 2241
Query 2347 GGATTTGCTTCAAACTTCGCTGGTGGATTGGATAACTTTGCCGCTAGTCCTTTATTTTCT 2406
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2242 GGATTTGCTTCAAACTACGCTGGTGGATTGGATAACTTTGCTGCTAGTCCTTTATTCTCT 2301
Query 2407 TCGCACAAGAATCCTGTTTCACGACCTCAAGTTTCTGCGCCTCCAGGATTTTCTGCTCCC 2466
|||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2302 TCGCACAAAAATCCTGTTTCACGACCCCAAGTTTCTGCACCGCCAGGATTTTCTGCTCCC 2361
Query 2467 AACAGGCTACCTCCTCCTGGCTTCTCGTCACATGAAAGAGTGGGCCTATCATCAGATACT 2526
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2362 AACAGGCTACCTCCTCCTGGCTTCTCTTCACATGAAAGAGTGGGCCTATCTTCAGATACC 2421
Query 2527 ACACTAGGAAATCGATTTCTTGACTCTACTTC-AT-T-GAGGAATGCATATCAAGTACCA 2583
||||||||| |||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 2422 GCACTAGGAACTCGATTTCTTGACTCTACCTCCATATTGAGGAATGCATATCAAGTACCA 2481
Query 2584 CCTCCAGTTGGTAATTCAAATGGTGCAAGTGATATCGACTTTGTGGATCCTGCAATTCTA 2643
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2482 CCTCCAGTTGGTAATTCAAATGGTGCAAGTGATATTGACTTTGTGGATCCTGCAATTCTA 2541
Query 2644 GCTGTTGGAAGAGGGATGGTAAATGCTGACTTGGA-CATGAGATCAGGATTCTCATCACA 2702
||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 2542 GCTGTTGGAAGAGGGCTGGTAAATGCAGACTTGGATC-TGAGATCAGGATTCTCATCACA 2600
Query 2703 ACTGAATTCTTTTGAAAACGAAACAGGACTCCATATGTTGAGACAGCAGTCTCTGTCTTC 2762
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2601 ACTGAATTCTTTTGAAAACGAAACAGGGCTCCATATGTTGAGACAGCAGTCCCTGTCTTC 2660
Query 2763 TGCACA--A-CAAGTTAATGGGTTTCATCATGATCTCAGAAACTTATCTCCTTCACTTAA 2819
|||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2661 TGCACACCAACAAGTTAATGGGTTTCATCATGATCTCAGAAACGTATCTCCTTCACTTAA 2720
Query 2820 CGACCCTTACGGATTTAGCTCAAGGCTTATGGATCAAACACAGGGAAGTAGCTTGTCTCC 2879
||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 2721 CGATCCTTATGGATTTAGCGCAAGGCTAATGGATCAAACACAGGGAAGTAGCTTATCTCC 2780
Query 2880 TTTCTCACAGCTCCCAAGACAACAACCATCTGCAAATTCAATCTTGTCC-AATGGTCATC 2938
|||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| |
Sbjct 2781 TTTCTCACAGCTCCCAAGGCAACAACCATCTGCGAATTCAATCTTG-CCTAATGGTCA-C 2838
Query 2939 ACTGGGATAAGTGGAATGAAGGGCAAAGTGTGAACAATATAGGCATGGCCGAGCTTCTTA 2998
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2839 --TGGGATAAGTGGAATGAAGGGCAAAGTGTGAACAATATAGGCATGGCCAATCTTCTTA 2896
Query 2999 GGAATGAACGGCTGGGTTTTAATGGGAGCTTATACAACAACGGATATGAAGAACCAAAAT 3058
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 2897 GGAATGAACGGCTGGGTTTTAATGGGAGCTTGTACAACAACGGATATGAAGAATCGAAAT 2956
Query 3059 TCCGGATTCCAAGTCCCGGTGATGTGTATAACAGGACATATGGGATTTGA 3108
|||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2957 TCCGGATTCCAAGTCCTGGAGATGTGTATAACAGGACATATGGGATTTGA 3006
> Ahg484947 jgi|Araly1|484947|fgenesh2_kg.5__939__AT3G45630.1
Length=3408
Score = 1129 bits (611), Expect = 0.0
Identities = 1080/1299 (83%), Gaps = 62/1299 (5%)
Strand=Plus/Plus
Query 145 ATGAGTGACCATGGTGAGAAGACTTGTCCAC-TT-TGTGCTGAAGAGATGGATCTGACTG 202
|||||||| | ||||| |||||||| || | || ||||| || ||||||||| ||||||
Sbjct 87 ATGAGTGATTACGGTGAAAAGACTTG-CC-CTTTGTGTGCAGAGGAGATGGATTTGACTG 144
Query 203 ATCAACAATTGAAGCCTTGCAAATGTGGTTATCAGATTTGTGTTTGGTGCTGGCATCACA 262
| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 145 ACCAGCAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCACCACA 204
Query 263 TAGTGGACATGGCAGAGAAAGATCAAAT-AGAAGGGCGTTGTCCAGCTTGTCGCACTCCA 321
|| ||||||||||||||||||||| ||| ||||||||| ||||||||||| || ||||||
Sbjct 205 TAATGGACATGGCAGAGAAAGATC-AATCAGAAGGGCGCTGTCCAGCTTGCCGTACTCCA 263
Query 322 TATGACAAAGAAAAGATTGTAGGGATGACTGTTAATTGTGACAGTCTGGCTTCTGAAGGC 381
||||| |||||||||||||| |||||||| ||| || || || ||| | |||||||||
Sbjct 264 TATGATAAAGAAAAGATTGTTGGGATGACCGTTGATCAAGAGAGACTGACCTCTGAAGGC 323
Query 382 AATATGGAGCGCAAGAAGATC-CAGAAGTCAAAATCAAAATCTTCTGAAGGGAGAAAGCA 440
|| ||||| ||||| || | | || |||||||||| ||||||||||||||||||||||
Sbjct 324 AACATGGATCGCAA-AAAAACACAAAAGTCAAAATTGAAATCTTCTGAAGGGAGAAAGC- 381
Query 441 ACAACTCACCAGTGTGCGAGT-GATCCAGAGGAATCTTGTTTACATTGTTGGGTTGCCTC 499
| ||| || ||||| ||||| | || | || |||||||||||||||||||||||||| |
Sbjct 382 -C-ACTAACAAGTGTCCGAGTGGTTCGA-AGAAATCTTGTTTACATTGTTGGGTTGCCCC 438
Query 500 TTAATCTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAG 559
|||||||||| ||||||||||| | ||| | ||| || |||||||||||||||||||| |
Sbjct 439 TTAATCTAGCAGATGAAGATCTTCCCCAGCGTAATGAGTATTTTGGTCAGTATGGAAAGG 498
Query 560 TTCTAAAGGTTTCCATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAACAATA 619
||||||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||| |
Sbjct 499 TTCTAAAGGTTTCCATGTCCCGAACAGCAACAGGTCTCATCCAACAGTTCCCTAACAACA 558
Query 620 CATGCAGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAAGCTG 679
|||||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||
Sbjct 559 CATGCAGTGTATATATCACTTATGGCAAAGAGGAAGAGGCTGTTCGATGTATTCAATCTG 618
Query 680 TTCATGGGTTTATCTTGGATGGTAAACCATTGAAGGCATGTTTTGGGACAACCAAGTATT 739
| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 619 TCCATGGGTTTATCTTGGATGGTAAAGCACTGAAGGCATGTTTTGGGACAACAAAGTATT 678
Query 740 GTCATGCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTCTATTTGCACGAGG 799
||||||||||| | ||||| | | ||||| |||||||||||| ||||||||||| ||||
Sbjct 679 GTCATGCATGGTTAAGAAACGCGACATGCAACAATCCTGATTGCCTCTATTTGCATGAGG 738
Query 800 TTGGTTCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTA 859
|||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 739 TTGGCTCTCAAGAGGATAGTTTTACAAAAGATGAGATCATATCAGCCTATACAAGG-GT- 796
Query 860 GAGTTCAACAAATCACTGGAGCAACAAATATTCTGCAGCACCATTCAGGGAACATGCTAC 919
| || |||||||||||||||||||||| | |||| ||| |||||||| ||||||||
Sbjct 797 ---T-CAGCAAATCACTGGAGCAACAAATACTATGCAATACCGTTCAGGGAGCATGCTAC 852
Query 920 CTCCACCACTGGATGCTTATTGCAGTGACAGTTCTTCTGCAAAACCAATTATAAAGGTTC 979
|||||||| ||||||||||| |||||||||||||| |||| || |||||| ||| ||||
Sbjct 853 CTCCACCATTGGATGCTTATGGCAGTGACAGTTCTACTGCGAATCCAATTGCAAAAGTTC 912
Query 980 CTTCAACTAATGCAACTAGTGTTCCCAGGTA-TTCTCCGCCAAGTGGGAGTGGGAGCTCC 1038
|||| |||| | || ||||| ||| ||| | |||||| || | |||||||||||
Sbjct 913 CTTCTACTACTTCAGTTAGTGCTCCTAGG-AGTTCTCCACC---T---AGTGGGAGCTCT 965
Query 1039 AGCAGATCCACTGCCCTTCCTGCTGCAGCGTCATGGGGG--AC----A-CA--TCAG--- 1086
| | ||| ||||| |||||||||||||| ||||||||| || | || |||
Sbjct 966 GGTAAATCAACTGCGCTTCCTGCTGCAGCATCATGGGGGGCACGTTTAACAAATCAACAC 1025
Query 1087 TCTTTAGCAACTTCGG-TCACCTCAAATGGATCTTCTG-ATA-TACAAAGATCAACATCA 1143
|||||||||||||| | | ||||||||||||| || ||| | |||||||||||||||
Sbjct 1026 TCTTTAGCAACTTCAGCTTTG-TCAAATGGATCTT-TGGATAAT-CAAAGATCAACATCA 1082
Query 1144 GTGAATGGAACCTTACCCTTT-TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATC 1202
| ||||||||| || | | | ||| | ||||||||||| |||||||||||||||||| |
Sbjct 1083 GAGAATGGAACTTTGGC-TATGTCTACAGTTGTTGCAAATGCAGCTCATGGGCCTGTAAC 1141
Query 1203 CTCTAATGACATTCTTAA-AAGACCATCTCGCAAAGAAGAAAGCCAAATAGTTA--TGGA 1259
||||| | ||| |||| | || |||| ||| || ||||||| |||| | || || |
Sbjct 1142 CTCTAGTAACACTCTTCAGAA-ACCACCTCTTAAGGAAGAAATTCAAACA-TTGGCTGAA 1199
Query 1260 CAAAGTCAAACCTAGTGTGTTGAAGCCCTTGCAGCATAATG-TTGTGGT---TTCTGGGT 1315
|||| ||| ||||| ||||| ||||| |||||||| || | ||||| | ||||||||
Sbjct 1200 AAAAG-CAATCCTAGCGTGTTTAAGCCTTTGCAGCAGAA-GATTGTGTTGGATTCTGGGT 1257
Query 1316 CCGAGAGAATTACCGCACCCGATAGAGATCCTACTAGCAATC-GTTTATCCAGTTCAGTA 1374
|| |||||| ||| |||| |||||||||||| |||||||| | | |||| ||| || |
Sbjct 1258 CCAAGAGAACTACATCACCTAATAGAGATCCTAGTAGCAATCAGAT-ATCCTGTTTAGAA 1316
Query 1375 GACTCTGCCTACGG-AGGCAGAGACATTGACCAGCCTTC 1412
|| ||| ||||| || ||||| ||||||| |||||||
Sbjct 1317 GAATCTTCCTACAATAG-CAGAGTCATTGACAAGCCTTC 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132516469186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5