BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60190.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950775 jgi|Araly1|950775|scaffold_802662.1 1096 0.0
Ahg952514 jgi|Araly1|952514|scaffold_81700001.1 1079 0.0
> Ahg950775 jgi|Araly1|950775|scaffold_802662.1
Length=721
Score = 1096 bits (593), Expect = 0.0
Identities = 673/713 (94%), Gaps = 0/713 (0%)
Strand=Plus/Plus
Query 139 TCAGTATACGCTATGGGAAATACTTCTGATGACGACAAGATCCTCAGCTATGAAGATGTT 198
|||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 9 TCAGTATACGCTATGGGAAATACTTCTGGTGACGAAAAGATACTCAGCTATGAAGATGTT 68
Query 199 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCATTTTTCTAAACGATCGTGTT 258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 69 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCAATTTTCTAAACGATCGTGTT 128
Query 259 ATCGAGTTCTACCTTAGCTTCTTATCCACGGTTCACAGTTCCACTACCATCTCGCTAATC 318
|||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 129 ATCGAGTTCTACCTAAGCTTCTTATCCACAGTTCACAGTTCCCCTACCATCTCACTAATC 188
Query 319 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCGGACACCGAATACCTCAAAGATTTC 378
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 189 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCCGACACTGAATACCTCAAAGATTTC 248
Query 379 ATGAAACCACTTAATTTGCGCGACAAAGACCTCCTGATACTCCCTGTAAACGACAATTCA 438
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 249 ATGAAACCCCTTAATTTGCGCGACAAAGACCTCCTGATATTCCCTGTAAACGACAATACA 308
Query 439 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTCGTGTACTACAAAGAGGCC 498
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 309 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTTGTGTACTACAAAGAGGCC 368
Query 499 AACACGTTTGTCCATCACGATAGCTACATGGGAGTGAATAGATGGAGCGCGAAACAGCTC 558
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | |||
Sbjct 369 AACACGTTTGTCCATCACGATAGCTTCATGGGAGTGAATAAATGGAGCGCAAAAGATCTC 428
Query 559 TTCAAGGCGGTTTCTCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGAT 618
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TTCAAGGCGGTTTCGCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGAT 488
Query 619 ACACCACAGCAAAAGAATGGGTACGACTGCGGTGTTTTCCTTCTTGCTACCGCTCGGGTA 678
||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 ACACCGCAGCAAAAGAACGGGTACGACTGCGGTGTTTTCCTTCTTGCTATCGCTCGGGTT 548
Query 679 ATATGTGAATGGTTCAGCTCTGGAGGAATGAAGAACCGGGATGAGCTGTGGTTTGCTAAT 738
||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 549 ATATGCGAATGGTTCAGCGCTGGAGGAATGAAGAATCGGGATGAGCTGTGGTTTACTAAT 608
Query 739 GTGAAGGAGACTGTACCAGATCTGGTTAACCATCTGAGAGAAGAGATTTTGGCGCTGATC 798
|||||||||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||||
Sbjct 609 GTGAAGGAGACTTTACCTGATTTGGTTAATCATCTGAGAGAAGAGATATTGGGGCTGATC 668
Query 799 AAGAAGTTGATGTCTGAGAGTGTGAGTAAGTGAGAGATGGTTATTGAACGTGG 851
|||| ||||||||||||| ||| |||||| ||||| |||||||||||| ||||
Sbjct 669 AAGAGGTTGATGTCTGAGGGTGCGAGTAAATGAGAAATGGTTATTGAATGTGG 721
> Ahg952514 jgi|Araly1|952514|scaffold_81700001.1
Length=721
Score = 1079 bits (584), Expect = 0.0
Identities = 670/713 (94%), Gaps = 0/713 (0%)
Strand=Plus/Plus
Query 139 TCAGTATACGCTATGGGAAATACTTCTGATGACGACAAGATCCTCAGCTATGAAGATGTT 198
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 9 TCAGTATACGCTATGGGAAATACTTCTGGTGACGTCAAGATACTCAGCTATGAAGATGTT 68
Query 199 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCATTTTTCTAAACGATCGTGTT 258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 69 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCAATTTTCTAAACGATCGTGTT 128
Query 259 ATCGAGTTCTACCTTAGCTTCTTATCCACGGTTCACAGTTCCACTACCATCTCGCTAATC 318
|||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 129 ATCGAGTTCTACCTAAGCTTCTTATCCACAGTTCACAGTTCCCCTACCATCTCACTAATC 188
Query 319 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCGGACACCGAATACCTCAAAGATTTC 378
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 189 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCCGACACTGAACACCTCAAAGATTTC 248
Query 379 ATGAAACCACTTAATTTGCGCGACAAAGACCTCCTGATACTCCCTGTAAACGACAATTCA 438
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 249 GTGAAACCCCTTAATTTGCGCGACAAAGACCTCCTGATATTCCCTGTAAACGACAATACA 308
Query 439 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTCGTGTACTACAAAGAGGCC 498
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 309 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTTGTGTACTACAAAGAGGCC 368
Query 499 AACACGTTTGTCCATCACGATAGCTACATGGGAGTGAATAGATGGAGCGCGAAACAGCTC 558
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | |||
Sbjct 369 AACACGTTTGTCCATCACGATAGCTTCATGGGAGTGAATAAATGGAGCGCAAAAGATCTC 428
Query 559 TTCAAGGCGGTTTCTCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGAT 618
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 429 TACAAGGCGGTTTCGCCGTTTGTATCTAATGGAGATGCATCATACAAGGAATGCACTGAT 488
Query 619 ACACCACAGCAAAAGAATGGGTACGACTGCGGTGTTTTCCTTCTTGCTACCGCTCGGGTA 678
||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 ACACCGCAGCAAAAGAACGGGTACGACTGCGGTGTTTTCCTTCTTGCTATCGCTCGGGTT 548
Query 679 ATATGTGAATGGTTCAGCTCTGGAGGAATGAAGAACCGGGATGAGCTGTGGTTTGCTAAT 738
||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 549 ATATGCGAATGGTTCAGCGCTGGAGGAATGAAGAATCGGGATGAGCTGTGGTTTACTAAT 608
Query 739 GTGAAGGAGACTGTACCAGATCTGGTTAACCATCTGAGAGAAGAGATTTTGGCGCTGATC 798
||||||||||||||||| ||| ||||||| ||||||||||||||||| |||| |||||||
Sbjct 609 GTGAAGGAGACTGTACCTGATTTGGTTAATCATCTGAGAGAAGAGATATTGGGGCTGATC 668
Query 799 AAGAAGTTGATGTCTGAGAGTGTGAGTAAGTGAGAGATGGTTATTGAACGTGG 851
|||| ||||||||||||| ||| |||||| ||||| |||||||||||| ||||
Sbjct 669 AAGAGGTTGATGTCTGAGGGTGCGAGTAAATGAGAAATGGTTATTGAATGTGG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5