BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60200.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1 1474 0.0
Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1 172 5e-42
Ahg935641 jgi|Araly1|935641|scaffold_403629.1 110 4e-23
> Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1
Length=1245
Score = 1474 bits (798), Expect = 0.0
Identities = 998/1089 (92%), Gaps = 36/1089 (3%)
Strand=Plus/Plus
Query 70 ATAGTCTTCAAGCAACTTCTCAGATTCAGCTCTTATGGATCATTTGTTACAACACCAGGA 129
||| |||||||||| ||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 4 ATAATCTTCAAGCAGCTTCTCAGATTCAGCTCCTATGGATCATTTGTTACAGCAACAGGA 63
Query 130 TGTTTTTGGGAATTATAACAAAGCAAGAGAAGCAATGGGACTATCATATTCATCAAACCC 189
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 64 TGTTTTTGGAAATTATAACAAAGCAAGAGAAGCCATGGGACTATCATATCCATCAAACCC 123
Query 190 AACACCGTTAGATAACGACCAGAAGAAACCTTCT----C--CTGCAACGGCTGTGACAAG 243
||||| |||||||||||| ||||||||||||||| | ||||| |||| | ||||||
Sbjct 124 AACACAGTTAGATAACGATCAGAAGAAACCTTCTCCGGCGACTGCAGCGGCGGCGACAAG 183
Query 244 GCCACAGCCTCCGGAGCTAGCTCTCAGGTGTCCACGTTGCGACTCAACAAACACAAAGTT 303
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 184 GCCACAGCCACCGGAGCTAGCTCTGAGATGTCCACGTTGCGACTCAACAAACACAAAGTT 243
Query 304 TTGTTACTACAACAACTACAGTCTCACTCAGCCTCGCTACTTCTGCAAATCATGCCGGAG 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 244 TTGTTACTACAACAACTACAGTCTCACTCAGCCTCGGTACTTCTGCAAATCATGCCGGAG 303
Query 364 ATATTGGACTAAAGGTGGAACTCTAAGGAACATCCCCGTGGGTGGAGGCTGCCGGAAAAA 423
||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 304 ATATTGGACCAAAGGTGGAACCCTAAGGAATATCCCCGTCGGTGGAGGCTGCCGGAAAAA 363
Query 424 CAAACGATCCACATCTTCGGCTG-CAAGAAGCCTCAGAACCACTCCAGAACCGGCGTCCC 482
|||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||
Sbjct 364 CAAACGGTCCACATCTTCAG-TGACAAGAAGCCTCAGAACCACACCAGAACCGGCGTCCC 422
Query 483 ACGACGGGAAAGTCTTCTCGGCGGC-AGGTTTTAATGGGTATAGTAACAATGAACATATT 541
|||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 423 ACGACGGGAAAGCCTTCTCGGCGGCGAG-TTTTAATGGGTATAATAACAATGAACATATT 481
Query 542 GATCTGAGCTTAGCCTTTGCCTTGCTGAACAAACAACATCCGGGGAGTTCTTCACAGCTA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GATCTGAGCTTAGCCTTTGCCTTGCTGAACAAACAACATCCGGGGAGTTCTTCACAGCTA 541
Query 602 GGGTTTCATTCAGAACTCGGTAGCTCTCATCAGTCTGACATGGAAGGTATGTTTGGGACA 661
||||||||||| ||| |||||| ||||||||||||||| ||||| ||| ||||||| |||
Sbjct 542 GGGTTTCATTCGGAATTCGGTAACTCTCATCAGTCTGATATGGAGGGTGTGTTTGGAACA 601
Query 662 AGCCAACAAAAAGAGAACGCTACTTATGCGTTTGGTAACGGGAGCAGCGGTTTGGGTGAT 721
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 602 AGCCAACAGAAAGAGAACGCTACTTATGCGTTTGGAAACGGGAGCAGCGGTTTGGGTGAT 661
Query 722 CCAAGCAGAGTCTTATGGGGATTTCCATGGCAGATGAATGGAGAGAGCTTTGGAATGATG 781
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 662 CCAAGCAGGGTCTTGTGGGGATTCCCATGGCAGATGAACGGAGAGAGCTTTGGGATGATG 721
Query 782 AACATAGGAGGAGGTGGTGGTCATGTAGATCAGATTGATTCAGGGAGAGAGATGTGGACC 841
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 722 AACATAGGAGGGGGTGGTGGTCATGTAGATCAGATCGATTCAGGGAGAGAGATTTGGACC 781
Query 842 AATATGAACTACATTAATTCTGGTGCTTTAATGTAGTTCAAA--A-TTAAAACCCCAATA 898
||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 782 AATATGAACTATATCAATTCTGGTGCTTTAATGTAGTTCAAATTAATTAAAACCCCAATA 841
Query 899 TTATTTGGGTTTTGATTTAGGGTTTGAATTTCATGTTTTTTAATGGGAGTAGAAAAGGGT 958
|||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 842 TTATTTGGGTTTTGATTTAGGGTTTGAATTTCATGTTTTTTATTGGGAGAA-AAAAGGG- 899
Query 959 GGTAGCTATTTTATGAAATGGTTAAGGAAGTATAGATATATTAGGGCTTCTTCAAA---- 1014
| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 G-TAGCTATTTTATGAAATGGTTAAG----TATAGATATATTAGGGCTTCTTCAAATTAA 954
Query 1015 -GAGTTTCAAACTTGCAAAATGGGGTTGGGGTAGTTCTTGTTTTCGATTTCTGATCTAAA 1073
||||||||||||||||||||| ||||||||||||| ||||||| | |||| ||| |
Sbjct 955 AGAGTTTCAAACTTGCAAAATGAGGTTGGGGTAGTTTTTGTTTTGG-TTTCCGAT-T--- 1009
Query 1074 TTGTTGAGTTTCTTTATTTGTATGTTCACTATGTTTA-AATGAAACATTTCCTTTGTTGT 1132
| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1010 --G---ACTTTCTTTATTTGTATGTTCACTATGTTTTTAATGAAACATTTCCTTTCTTGT 1064
Query 1133 TCTAATTTC 1141
||||| |||
Sbjct 1065 TCTAAATTC 1073
Score = 237 bits (128), Expect = 2e-61
Identities = 149/159 (94%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 1286 AACCCTAATCTCTCCCATTGAAACCTAATCATTATTTCTCCTATAAAAATCTGACATATA 1345
||||||||| || | |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1088 AACCCTAATTTCAACTATTGAAACCTAATCATTAATTCTCCTATAAAAATCTGACATCTA 1147
Query 1346 GAGGCTTCTTAATGGCTCGGTTAATAAGGTTGATGTTTCTACTTAATTGATTTAGTGACG 1405
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1148 GAGGC-TCTTAATGGCTCGGTCAATAGGGTTGATGTTTCTACTTAATTGATTTAGTGACG 1206
Query 1406 TAAAGGATCAATCTTGGTAATGGTATATAATGTCAAATA 1444
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1207 TAAAGGATCAATCTTGGTAATGTTATATAATGTCAAATA 1245
> Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1
Length=1096
Score = 172 bits (93), Expect = 5e-42
Identities = 139/162 (86%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 272 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 331
|||||| | || || || ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 247 TGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCT 306
Query 332 CAGCCTCGCTACTTCTGCAAATCATGCCGGAGATATTGGACTAAAGGTGGAACTCTAAGG 391
|| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |
Sbjct 307 CAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGTGGTACTCTCCGT 366
Query 392 AACATCCCCGTGGGTGGAGGCTGCCGGAAAAACAAACGATCC 433
||| ||||||| ||||| || ||||| |||||||||||||
Sbjct 367 AACGTCCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 408
> Ahg935641 jgi|Araly1|935641|scaffold_403629.1
Length=1153
Score = 110 bits (59), Expect = 4e-23
Identities = 124/156 (79%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 272 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 331
|||||| | || |||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 264 TGTCCAAGATGTAACTCTACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACA 323
Query 332 CAGCCTCGCTACTTCTGCAAATCATGCCGGAGATATTGGACTAAAGGTGGAACTCTAAGG 391
|| || | |||||||||||| || || || |||||||| |||||||| |||| |||
Sbjct 324 CAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGG 383
Query 392 AACATCCCCGTGGGTGGAGGCTGCCGGAAA-AACAA 426
|| | || ||||| ||| ||| | |||| |||||
Sbjct 384 AATGTTCCTGTGGGAGGAAGCT-CAAGAAAGAACAA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5