BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60210.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496159 jgi|Araly1|496159|fgenesh2_kg.8__1975__AT5G60210.1 2852 0.0
> Ahg496159 jgi|Araly1|496159|fgenesh2_kg.8__1975__AT5G60210.1
Length=1964
Score = 2852 bits (1544), Expect = 0.0
Identities = 1822/1948 (94%), Gaps = 51/1948 (3%)
Strand=Plus/Plus
Query 101 AATGGATCTCCGGATGTTCCTAAGAAGGTGTCTCCTCGAGCTGCTCGGCCACTGAAGATC 160
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATGGATCTCCAGATGTTCCTAAGAAGGTGTCTCCTCGAGCTGCTCGGCCACTGAAGATC 60
Query 161 GCAGCGCTAGAGCCTGAATCTTCTTCATCTCCTATCTCAGCTACTAACAGAACACCAAAG 220
|||||||||||||||||||| || ||||||||| ||||||| |||| |||||||||||||
Sbjct 61 GCAGCGCTAGAGCCTGAATCCTCGTCATCTCCTGTCTCAGCCACTATCAGAACACCAAAG 120
Query 221 GATAAGAGTCCAAACGTTCTAAATCGTAGGTCTCCTCGAAGCCCTGTCTCTGAGAAGAAG 280
||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATAAAAGTTCAAAAGTTCTAGATCGTAGGTCTCCACGAAGCCCTGTCTCTGAGAAGAAG 180
Query 281 AGGCCGAGTAGAATAACGGAGCTAGAGTTGCTAGTCTCGCAGCTTCAGGAGGAGCTAAAA 340
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 AGACCAAGTAGAATAACGGAGCTGGAGTTGCTAGTCTCGCAGCTTCAGGAGGAGCTGAAA 240
Query 341 AAGGCGAAAGATCAAATCTCAGTGTCTGAAACATCAAAGAAGCAAGCAGAACAAGAAGCA 400
| ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 241 AGGGCAAAAGATCAAATCTCAGTGTCTGAAACGTCAAAGAAGCAAGCAGAGCAAGAGGCA 300
Query 401 GAGGAGTCCAGGAAACAGCTCCAAGAAGTTTCTTCTAAGCTTGAGGAGAGCCAGAATCAG 460
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 301 GAGGAGTCCAGGAAACAGCTGCAAGAAGTTTCCTCTAAGCTTGAGGAGAACCAGAATCAG 360
Query 461 TTTGTGGAAACTTCAGCCTTGGAAGAAGAAACCGATAAAACCGGTTCTCTTGTTTTTCAA 520
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTTTTGGAAATTTCAGCCTTGGGAGAAGAAACCGATAAAACCGGTTCTCTTGTTCATCAA 420
Query 521 AGTGTATCTCAGGAGTGTGATTGGGAGTTTAGTGCTACTGCTGGTGAAAGAGCAGGATTA 580
||||||||||||| ||| | || || | ||||||||||||||||||||||||
Sbjct 421 GGTGTATCTCAGGA--GTG--T--GA--TT--T--TACTGCTGGTGAAAGAGCAGGATTG 468
Query 581 GCTGCTGTTGCTCATGAGATCCGACAACTCAAGCTTCAGATTGAGATGGTGGCTTCTTCT 640
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCTGCTGTTGCTCATGAGATTCGACAACTCAAGCTTCAGATTGAGATGGTGGCTTCTTCC 528
Query 641 GAAGCTGGTCATGTGAAACAAGCTGAGTTGTATAACTCAGAGGTTCAACTTTTGAGAGGA 700
|||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 529 GAAGCTGGTCATGTGAAACAGGCTGAGTTGCATAACTCGGAGGTTCAACTTTTGAGAGGA 588
Query 701 AACTTAATGGACACGCTTTTCCACGTCGAGAATTTCAGGAACCAACTTAAGGACTGTGAG 760
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 589 AACTTAATGGACACGCTTTTCCATGTCGAGAATTTCAGGAACCAACTCAAGGACTGTGAG 648
Query 761 ATATCAGAAGCTGAAACCGAGGCTTTAGCCACTGAAACTCTTAGGCAATTGGAGAATGCG 820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GTATCAGAAGCTGAAACCGAGGCTTTAGCCACTGAAACTCTTAGGCAATTGGAGAATGCG 708
Query 821 AAAAAGGCAGTAGAAGAACTGAAGTCAGATGGCACAAAAGCTGTTGAGAGTTACAAGAAG 880
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 709 AGAAAGGCAGTAGAAGAACTGAAGTCAGATGGCACAAAAGCAGTTGAGAGTTACAAGAAG 768
Query 881 ATGGCTGTGGAGCTTGAACAGTCAAAATCAAGGATGGTATGGCTTGAAGCTCTTGTGAAT 940
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 769 ATGGCTGTGGAGCTTGAACAGTCAAAATCAAGAATGGTATGGCTTGAAGCTCTTGTGAAT 828
Query 941 AAACTTCAGAACAATCCAGCAGATTTGGAAAACCACGAAATCCTGCTTAAAGACTATGAA 1000
|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 829 AAACTTCAGACCAATCCAGCAGATTTGGAAAACCATGAAATCCTACTTAAAGACTATGAA 888
Query 1001 AGTTTGAGACGTGGGGAATCAAATGAGATGGATGAAGAAGTATCTTCCTTAAGATGTGAG 1060
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTTTGAAACGTGGGGAATCAAATGAGATGGATGAAGAAGTATCTTCCTTAAGATGTGAG 948
Query 1061 GTAGAGCGACTGAGAGCAGCTCTAGAAGCTTCTGATAAAAAAGACCAAGAAGGTAATGTA 1120
||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 949 GTAGAGCGACTGAGAGCGGCTCTAGAAGCTTGTGATAAAAAAGACCAAGAGGGTAACGTA 1008
Query 1121 GAGGCTTCTTCTCGGTTACGGATACAAGCTGAACTCCAGTCTGAATTAAAGATTGCTAAA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAGGCTTCTTCTCGGTTACGGATACAAGCTGAACTCCAGTCTGAATTAAAGATTGCTAAA 1068
Query 1181 TCTGAGATAGACGAGCTAAAGGCGAGGTTGATGGACAAAGAAACAGAATTACAGTTTATT 1240
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1069 TCCGAGATAGACGAGCTAAAGGCGAGGTTGATGGACAAGGAAACAGAATTACAGTTTATT 1128
Query 1241 TCAGAGGAAAGAGATAACTTTA-GCATGAAACTGATGAAGAACCAGAAAGAAATAGATGT 1299
|||||||| ||||||||| ||| || |||||||||||||| | |||||||||||||||||
Sbjct 1129 TCAGAGGAGAGAGATAAC-TTATGCCTGAAACTGATGAAGGATCAGAAAGAAATAGATGT 1187
Query 1300 TGAAGCTGAGCTGAAGAAACTAAGGGAGGCGATCGAGAATTTAAAGGCGGATTTGATGGA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TGAAGCTGAGCTGAAGAAACTAAGGGAGGCGATCGAGAATTTAAAGGCGGATTTGATGGA 1247
Query 1360 TAAAGAAACAGAACTCCAGATCGTTTCAGATGAGAACGAGACATTGAAGTCAGATATCCA 1419
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TAAAGAGACAGAACTACAGATCGTTTCAGATGAGAACGAGACATTGAAGTCAGATATCCA 1307
Query 1420 CAAGAGCGAGACAGATGTACAAGACGCGTTCCTGAAGCTAGGGATTGCAATGGAAGAGGC 1479
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1308 CAAGAGGGAGGCAGATGTACAAGACGCGTTCATGAAGCTAGGGATTGCAATGGAAGAGGC 1367
Query 1480 TGACAAGAGTAGCAAGAAAGCGGTTAGAGTCACCGAGCAACTAGAGGCTACTCAAGCTTC 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGACAAGAGTAGCAAGAAAGCGGTTAGAGTCACCGAGCAACTAGAGGCTACTCAAGCTTC 1427
Query 1540 AAACTCAGAAATGGAAACAGAACTCAGGAAGCTCAAAGTTCAATCAAACCAATGGAGAAA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1428 AAACTCAGAAATGGAAACAGAACTCAGGAAGCTCAAAGTTCAATCAAACCAGTGGAGAAA 1487
Query 1600 AGCTGCTGAAGCAGCTACTGCCATGCTCTCTGCTGGAAACAACGGGAAATTCGCTGAGAA 1659
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1488 AGCTGCTGAAGCAGCTACTGCCATGCTCTCTGCTGGAAACAACGGGAAATTCACTGAGAA 1547
Query 1660 CTATAATCAAACGAACTCCCCGTACTCTGAGGATATCGATGATGAACTGACAAAGAAGAA 1719
|||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1548 CTATAATCAAACAAACTCTCCTTACTCTGAGGATATCGACGATGAGCTGACAAAGAAGAA 1607
Query 1720 AAATGGGAATGTGCTCAAGAAGATTGGAGTTTTGTGGAAGAAGCCTCAGAAATAGTTGGA 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 AAATGGGAATGTGCTCAAGAAGATTGGAGTTTTGTGGAAGAAGCCTCAGAAATAGTTGGA 1667
Query 1780 GAATAACTTAATATAATTAGGTATCGTCGACTTGGAGTTGGATTATAAGAGCAACTCATG 1839
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 1668 GAATAACT-AATATAATTAGGTACCGTCGATTTGGAGTTGGATTATAAGAGCAACTCAAG 1726
Query 1840 TGACTTCG-GTATCGATGTGAATTAGTAGTTTGAGAACAATGTTGTGGAAAATACATGTT 1898
|||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1727 TGACTT-GAGTA---ATGTGAATTAGTAGTTTGAGAACAATGTTCTGGAAAATACATGTT 1782
Query 1899 CCAAAGATTTTTAGCTGTGGTAATTTTACTTTTGTTGTTTAAGTGTATTCTGGAGGGAAA 1958
| ||||||||||||||||||||||||| || | | | | ||||||| |
Sbjct 1783 CTAAAGATTTTTAGCTGTGGTAATTTT------GT-----A--T-T---CAGGAGGGAGA 1825
Query 1959 CTACTAAATCT-GTCATTAC-GGAACCAGTTAG-GCTT-GTTAACA--T---CAT--T-C 2006
||||||||||| | |||| | |||||||||||| |||| ||||||| | ||| | |
Sbjct 1826 CTACTAAATCTTG-CATT-CTGGAACCAGTTAGTGCTTTGTTAACAACTTAACATCATTC 1883
Query 2007 AAAGGCACGAAAGCCTCTGGTTAATTTT 2034
||||||||||||||||||||| ||||||
Sbjct 1884 AAAGGCACGAAAGCCTCTGGTGAATTTT 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5