BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60220.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358240 jgi|Araly1|358240|fgenesh1_pg.C_scaffold_8002027 1301 0.0
> Ahg358240 jgi|Araly1|358240|fgenesh1_pg.C_scaffold_8002027
Length=858
Score = 1301 bits (704), Expect = 0.0
Identities = 813/864 (94%), Gaps = 13/864 (2%)
Strand=Plus/Plus
Query 1 ATGAGATCGAG-AAGTAACCTTATAGGTCTCATAAACTTCTTCACTTTCCTCCTGTCGAT 59
||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 ATGAGATCGAGCAA-TAACCTTATAGGTCTCGTAAACTTCTTCACTTTCCTCCTTTCGAT 59
Query 60 TCCTATCCTCGGCGGTGGAATATGGCTTAGCAGCCGAGCTAACTCAACCGATTGCCTCAG 119
||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 60 TCCGATCCTCGGCGGTGGAATATGGCTGAGCAGCAGAGCTAACTCAACCGACTGCCTCAG 119
Query 120 ATTCCTCCAGTGGCCACTCATTATCATCGGAATATCAATCATGGTCATATCTTTAGCCGG 179
||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 120 ATTCCTCCAGTGGCCACTCATAATCATCGGAATCTCAATCATGGTCGTATCTTTAGCCGG 179
Query 180 AATCGCCGGAGCTTGTTACCAAAACAAGTTCCTCATGTGGCTTTACCTTTTCACCATGTT 239
|||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 180 AATCGCTGGAGCTTGTTACCAGAACAAGTTCCTCATGTGGCTTTACCTTTTCGCCATGTT 239
Query 240 CTTTGTAATCGCTGCTCTTATAGGATTCA-CAATCTTCGCTTACG-TAGTTACTGATAAA 297
||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||
Sbjct 240 CTTTGTAATCGCTGCTCTTATAGGATTCATC-ATCTTCGCTTACGCT-GTTACTGATAAA 297
Query 298 GGCTCAGGCCGGTTTGTGATGAACCGTCGGTATCTTGATTATTATCTCAATGATTATTCC 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GGCTCAGGCCGGTTTGTGATGAACCGTCGGTATCTTGATTATTATCTCCATGATTATTCC 357
Query 358 GGTTGGTTAAAGGACCGTGTCACAGATAATGGATATTGGAGA-GATATCGGATCGTGTGT 416
|||||||| ||||| |||||||| |||||||||||||||| | || || |||||||||||
Sbjct 358 GGTTGGTTGAAGGATCGTGTCACGGATAATGGATATTGGA-ATGAAATTGGATCGTGTGT 416
Query 417 TAGAGATTCTGGAGTTTGTAAGAAGATTGGAAGAGATTTAAATGGTGTTCCAGAAACTGC 476
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 417 TAGAGATTCTGGAGTTTGTAAGAAGATACGAAGAGATTTAAATGGTGTTCCTGAAACTCC 476
Query 477 TCATATGTTTTACTTCAGAAATCTTTCTCCTGTTGAGTCCGGATGTTGCAAGCCGCCAAC 536
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCAGATGTTTTACTTCAGAAAGCTTTCTCCTGTTGAGTCCGGATGTTGCAAGCCGCCAAC 536
Query 537 AGATTGTGGCTATACGTACGTGAACGAGACAGTGTGGATTCCGGGAGGAGAAATGGTGGG 596
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 537 AGATTGTGGGTATACGTACGTGAATGAGACTGTGTGGATTCCGGGAGGAGAAATGGTGGG 596
Query 597 ACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAGACTACTCTGTTACCAATGCAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAGACTACTCTGTTACCAATGCAG 656
Query 657 CTCTTGTAAAGCCGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTCTCGGTGAT 716
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 CTCTTGTAAAGCTGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTATCGGTGAT 716
Query 717 CAACATCGTGGT-TGTGATCATACTTGTTATCTTCTATGTCATCGCGTGTGCGGCTTACC 775
|||||| ||||| | ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 717 CAACATTGTGGTCT-TGATCATACTTGTTATCTTCTATGTCATCGCCTATGCAGCTTACC 775
Query 776 AGAATGTTAAGAGGAT-GTATAATGACGAACCGGTCGGTGAGGCTAGGATGACCAA-TCT 833
|||| |||||||||| | ||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 776 GGAATATTAAGAGGATTG-ATAATGACGAACCCGTCGGTGAGGCAAGGATGACCAAATCT 834
Query 834 CATCCTAGTCATTTTCAAATTTAA 857
||||||||||||||||| ||||||
Sbjct 835 CATCCTAGTCATTTTCAGATTTAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5