BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60230.2
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917773 jgi|Araly1|917773|Al_scaffold_0008_2524 1136 0.0
> Ahg917773 jgi|Araly1|917773|Al_scaffold_0008_2524
Length=747
Score = 1136 bits (615), Expect = 0.0
Identities = 704/748 (94%), Gaps = 1/748 (0%)
Strand=Plus/Plus
Query 644 ATGCAGCTCAATTCCATGGCGCCTAGATGGAAATGGAAAGGAGCTGAAGCAAAAGCTCTT 703
|||||| | |||| |||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCAGTTTAATTTCATGGCTCCGAGATGGAAATGGAAAGGTGCTGAAGCAAAAGCTCTT 60
Query 704 GCAGAACCTATTTCAAAATCAGTCTCAGAGCTCCAGCTCTCTCTAGCCGAAACAGAGTCC 763
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 61 GCAGAACCTATTTCTAAATCAGTCTCAGAGCTCCAGCTCTCTCTGGCTGAAACAGAGTCC 120
Query 764 TCGGGAACCCTCTCAAGTTGCAATGTGCTTCTAGCGGTTGAGCCAGAGCAAGCTGAGCTT 823
|| || ||| | || |||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 121 TCCGGTACCTTATCGAGTTCCAATGTGCTTCTAGCGGTTGAGCCAGAACAAGCTGTGCTT 180
Query 824 CTTGACCGTTGTTGTTTTGGCAGACTCGTTCTATCGGCAGAGAAAATCAAGAAATGGATT 883
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 181 CTTGACCGTTGTTGTTTTGGCAGACTCGTTCTATCCGCTGAGAAAGTCAAGAAATGGATT 240
Query 884 CAGTTATCTTTTGAAGAAGCTTTCTTTTTGCATTACAATCTCAAATGCATCAAAATCTCA 943
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 241 CAGTTATCTTTTGAAGAAGCTTTCTTTTTGCACTACAATCTCAAATGCATCAAAATATCT 300
Query 944 CTTCAAGGTCGTTGCTTGGAGAATGAAGTAGACACATGGCTCTACATGAAATCAAAAAGA 1003
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CTTCAAGGTCGTTGCTTGGAGAATGAAGTAGATACATGGCTCTACATGAAATCAAAAAGA 360
Query 1004 CCAAACTTTCCAATGTTTTTCAAAGCTTATTCACATTTACGATCGAAGAACTGGGTTTTG 1063
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 CCAAACTTCCCAATGTTTTTCAAAGCTTATTCACATTTACGATCGAAGAATTGGGTGTTG 420
Query 1064 AGATCAGGGTTGCAATACGGTGTGGATTTTGTGGCATACCGTCACCATCCATCTCTTGTC 1123
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 421 AGATCCGGGTTGCAATACGGTGTGGATTTCGTCGCATACCGTCACCATCCATCTCTTGTC 480
Query 1124 CACTCTGAATACTCGGTTTTAGTTCAGTCTGGTGACAGTGATCGGTTAAGAGTGTGGTCA 1183
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACTCTGAATACTCAGTTTTGGTTCAGTCTGGTGACAGTGATCGGTTAAGAGTGTGGTCA 540
Query 1184 GATATCCATTGTGCTGTTAGGTTAAGCGGAAGTGTTGCGAAAACGTTGTTGACTCTCTAC 1243
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 541 GATATCCATTGTGCTGTTCGGTTAAGTGGAAGCGTTGCGAAAACGTTGTTGACTCTCTAT 600
Query 1244 GTTAATGGTAACTTCAAAGGAGAGGATGTGAATCTACTTGTATGTTTGGAGAACTTCACA 1303
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 601 GTCAATGGTAACTTCAAAGGAGAGGATTTGAATCTACCTGTATGTTTGGAGAACTTCACA 660
Query 1304 GTGGAAGAACAAACGATAAGTAGATGGAGCCCAGAACTCAGTCGTGAAGATCAATCCACA 1363
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GTGGAAGAACAGACGATAAGTAGATGGAGCCCAGAACTCAGTCGTGAAGAT-AATCCACA 719
Query 1364 AATTCAAAACAACATGTTCCCAACGTGA 1391
|||||||||||| ||||| |||| ||||
Sbjct 720 AATTCAAAACAAAATGTTACCAATGTGA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5