BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60250.1
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917774 jgi|Araly1|917774|Al_scaffold_0008_2525 1587 0.0
Ahg915258 jgi|Araly1|915258|Al_scaffold_0008_9 1118 0.0
Ahg915259 jgi|Araly1|915259|Al_scaffold_0008_10 730 0.0
> Ahg917774 jgi|Araly1|917774|Al_scaffold_0008_2525
Length=1551
Score = 1587 bits (859), Expect = 0.0
Identities = 997/1064 (94%), Gaps = 7/1064 (1%)
Strand=Plus/Plus
Query 820 GCATCATGCAACACTTTTCATCTTATCAGCATGTTCTGGTGGCTAGAAATGATGTTAAAT 879
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 379 GCATCATGCAACACTTTTCATCTTGTCAGCATGTTCTGGTGGCTGGAAACGATGTTAAAT 438
Query 880 TTGCTTATAAACTTGCAAGGGAATCAATACTTTCTATGGTCACCCCTCATGAAGATCCTC 939
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 TTGCTTATAAACTTCCAAGGGAATCAATACTTTCTACGGTCACCCCTCATGAAGATCCTC 498
Query 940 GCCAAGCAAAAGCTGTTCTGAAAGAGGAGTGTGCTATCTGTTTCAACGACAT-CGTTGCT 998
||||||||||| | | || |||||||||||||||||||||||||||||| || | |||||
Sbjct 499 GCCAAGCAAAATCAGCTCGGAAAGAGGAGTGTGCTATCTGTTTCAACGATATCCCTTGCT 558
Query 999 GAGGGTATGTTTTCTGTT-GACAAATGCCGTCACCGTTTTTGCTTTCAATGTGTGAAACA 1057
||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 559 GAGCGCATGTTTTCTGTTGGA-AAATGCCGTCACCGCTTTTGCTTTCAATGTGTGAAACA 617
Query 1058 GCATGTAGAGGTGAAGCTGCTTCATGGAATGGCTCCAAAATGTCCTCACGATGGCTGCAA 1117
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 618 ACATGTTGAGGTGAAGCTGCTTCATGGAATGGTTCCGAAATGTCCTCACGATGGCTGCAA 677
Query 1118 GTCTGAGCTGGTTATCGATGCATGTGGCAAGCTTTTGACTCCAAAGCTGAGTAAATTGTG 1177
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 678 GTCTGAGCTGGTTATCGATGCCTGTGGCAAGCTTTTGACTCCAAAACTGAGTAAAATGTG 737
Query 1178 GCAACAAAGACTTCAAGAGAATGCAATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 1237
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 738 GCAACAAAGACTTAAAGAGAATGCGATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 797
Query 1238 GAGGTGCTCGGCTTTGATGTCCAAAACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 1297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 798 GAGGTGCTCGGCTTTGATGTCCAAGACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 857
Query 1298 TCTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 1357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 917
Query 1358 CTGTAAAGTTCCGTGGCATGGAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTGA 1417
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 918 CTGTAAAGTTCCGTGGCATGCAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTAA 977
Query 1418 GCCTCCGGCAGATGATGTGAAGCTCAAATCTCTTGCAAATAATAAGATGTGGCGCCAGTG 1477
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 978 CCCTCCAGCAGATGACGTGAAGCTAAAATCTCTTGCGAACAATAAGATGTGGCGCCAATG 1037
Query 1478 TGGCAAGTGCCAACACATGATTGAACTTTCACAAGGATGCAATCACATAACTTGCAGATG 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGGCAAGTGCCAACACATGATTGAACTTTCACAAGGATGCAATCACATAACTTGCAGATG 1097
Query 1538 CGGGCATGAGTTTTGCTACAATTGCGGAGGTGGATGGAACAAGATAATGGGGACTTGTTT 1597
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1098 TGGGCATGAGTTTTGCTACAATTGCGGAGGTGGATGGAACAAGAAAATGAGGACTTGTGT 1157
Query 1598 AAATCGCTGCCCAACCTGGAACGAAGAATACATCACACGACAAGATCCAGCGCGTGCCAA 1657
|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1158 AAATCGCTGCCCGGCCTGGAACGAAGAATACATCACACGTGAAGATCCAGTGCGTGCCAA 1217
Query 1658 TGTGGCAGC-TAACAACTACTTtgatgatgaggatgatgat-gatgttgatggtgattac 1715
|||||| || ||||||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1218 TGTGGC-GCCTAACAACTACTTTGATGATGAGGATGAGGACAG-TGATGATGATGATTAC 1275
Query 1716 gactatgatgaCTTCTTCCACCCGCATTTTGGACATGCTATGAATGATCGTAATCCTGAA 1775
|||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 1276 GACTATGAAGACTTCTTCCACCCTCATTTTGGACATGCTATGAATGCTCATAATCCTGAA 1335
Query 1776 GAGCCCTTCGACCCCTTCTTCGACTTGCCAGATGGTGTGCTCTTTACCCCCCAGATGTTG 1835
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1336 GAGCCCTTCGACCCCTTCTTCGACTTGCCAGATGGTGTGATCTTTACCCCCGAGATGTTG 1395
Query 1836 TCTTCCAAGAGTCGTCAGCAATTGTACTTGCCGGATTCAGATGA 1879
||| |||||||||||| ||||||||| || |||| |||||||
Sbjct 1396 TCTCCCAAGAGTCGTCTCCAATTGTACATGGCGGAAGCAGATGA 1439
Score = 508 bits (275), Expect = 5e-143
Identities = 349/384 (91%), Gaps = 7/384 (2%)
Strand=Plus/Plus
Query 69 ATGGATTTCGATTCCGAGTATGCTTTTCGGTTACAGATGGAGGAGGCACTCGCGGCTTCT 128
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCCGATTCCGAATATGCTTTTCGGTTACAGATGGAGGAGGCACTCGCGGCTTCT 60
Query 129 CTATCTTCTCAATCTCGCACTCCGCAACGACCACCGTCACCTCCGATTGTGGCTACGTGT 188
||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||
Sbjct 61 CTATCTTCTCAATCTCGCACTCCTCAACGACCACCTTCTCCTCCGATTGTGGCTTGGTGT 120
Query 189 GGTGTC-CTTATCGTTGAAAACAATCCAAACGATTCGAAGACGGCGAAAACAAGTAGCGG 247
||| || || |||||||||||| ||| |||| ||||| |||||| |||| |||||||||
Sbjct 121 GGTATCGCT-ATCGTTGAAAACGATCGGAACGGTTCGACGACGGCTAAAAAAAGTAGCGG 179
Query 248 TTACGGTTTCGATTTTAAGAGAGCCGTCGGCGGTGGAAACTCTAAAG-CAAAAGGCAAAA 306
||||||||||||||||| ||||||| ||||||| ||||||||||||| |||| |||||||
Sbjct 180 TTACGGTTTCGATTTTAGGAGAGCCATCGGCGGAGGAAACTCTAAAGGCAAA-GGCAAAA 238
Query 307 CCCACGAGTCTGTCACTGGTGTACGTACAGATGAACGAAACCCTAACATTGGGCTCGGTA 366
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 239 CCAACGAGTCTGTCACTGGTGTACGTACAGATGAACCAAACCCTAACATTGGGCTTGGTA 298
Query 367 ACTCCCGGAGTACGTCTACCGGACATGGCAATACGAAACCCTTGCCTCAGGAAACTGTTC 426
||||||||||||| | | ||||||| | |||| |||||||||||| |||| ||||||||
Sbjct 299 ACTCCCGGAGTAC-T-T-CCGGACACGATAATATGAAACCCTTGCCGCAGGTAACTGTTC 355
Query 427 GTCCGGCGCAATTAGTCGGTGAGG 450
||||||||||||||||||||||||
Sbjct 356 GTCCGGCGCAATTAGTCGGTGAGG 379
Score = 167 bits (90), Expect = 4e-40
Identities = 110/120 (92%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 1917 GCAGATGAGAATTGCCCATACTTTGGGAAGTATGGAAAGTACACTATAATGTACGACTCC 1976
||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1432 GCAGATGAGGATTGCGAATACTTTGGGAAGTATGGAAAGTACACTACAGTGTACGACTCC 1491
Query 1977 GACGGCTATGAACTCGAGGATTTCACGAACCCTTTCCATCCTGACTATCCTCACTTCTGA 2036
|||||||||||| ||||||| | ||||||||||||||||||||| || ||||||||||||
Sbjct 1492 GACGGCTATGAAATCGAGGACTACACGAACCCTTTCCATCCTGATTACCCTCACTTCTGA 1551
> Ahg915258 jgi|Araly1|915258|Al_scaffold_0008_9
Length=1095
Score = 1118 bits (605), Expect = 0.0
Identities = 686/726 (94%), Gaps = 2/726 (0%)
Strand=Plus/Plus
Query 759 GTCACGGGAAAATGGATGGCTAAGCAAAAGAAGATTTCCCTGTTGTTAGATGATCTTCAA 818
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 361 GTCACGGGAAAATGGATGGCCAAGCAAAAGAAGATTTCTTTGTTGTTAGATGATCTACAA 420
Query 819 AGCATCATGCAACACTTTTCATCTTATCAGCATGTTCTGGTGGCTAGAAATGATGTTAAA 878
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 421 AGCATCATGCAACACTTTTCATCTTGTCAGCATGTTCTGGTGGCTGGAAACGATGTTAAA 480
Query 879 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTATGGTCACCCCTCATGAAGATCCT 938
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 481 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTAAGATCACCCCTCATGAAGATCCT 540
Query 939 CGCCAAGCAAAAGCTGTTCTGAAAGAGGAGTGTGCTATCTGTTTCAACGACATCGTTGCT 998
|||||||||||| | | || |||||||||||||||||||||||||||||| ||| |||||
Sbjct 541 CGCCAAGCAAAATCAGCTCGGAAAGAGGAGTGTGCTATCTGTTTCAACGATATCCTTGCT 600
Query 999 GAGGGTATGTTTTCTGTT-GACAAATGCCGTCACCGTTTTTGCTTTCAATGTGTGAAACA 1057
||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 601 GAGCGCATGTTTTCTGTTGGA-AAATGCCGTCACCGCTTTTGCTTTCAATGTGTGAAACA 659
Query 1058 GCATGTAGAGGTGAAGCTGCTTCATGGAATGGCTCCAAAATGTCCTCACGATGGCTGCAA 1117
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 660 ACATGTTGAGGTGAAGCTGCTTCATGGAATGGTTCCGAAATGTCCTCACGATGGCTGCAA 719
Query 1118 GTCTGAGCTGGTTATCGATGCATGTGGCAAGCTTTTGACTCCAAAGCTGAGTAAATTGTG 1177
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 720 GTCTGAGCTGGTTATCGATGCCTGTGGCAAGCTTTTGACTCCAAAACTGAGTAAAATGTG 779
Query 1178 GCAACAAAGACTTCAAGAGAATGCAATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 1237
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GCAACAAAGACTTAAAGAGAATGCGATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 839
Query 1238 GAGGTGCTCGGCTTTGATGTCCAAAACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 1297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GAGGTGCTCGGCTTTGATGTCCAAGACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 899
Query 1298 TCTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 1357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 959
Query 1358 CTGTAAAGTTCCGTGGCATGGAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTGA 1417
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 960 CTGTAAAGTTCCGTGGCATGCAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTAA 1019
Query 1418 GCCTCCGGCAGATGATGTGAAGCTCAAATCTCTTGCAAATAATAAGATGTGGCGCCAGTG 1477
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 1020 CCCTCCAGCAGATGACGTGAAGCTAAAATCTCTTGCGAACAATAAGATGTGGCGCCAATG 1079
Query 1478 TGGCAA 1483
||||||
Sbjct 1080 TGGCAA 1085
Score = 473 bits (256), Expect = 2e-132
Identities = 331/366 (90%), Gaps = 9/366 (2%)
Strand=Plus/Plus
Query 55 TGCGGAGAGCAAGTATGGATTTCGATTCCGAGTATGCTTTTCGGTTACAGATGGAGGAGG 114
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TGCGGAAAGCAAGTATGGGTTCCGATTCCGAATATGCTTTTCGGTTACAGATGGAGGAGG 61
Query 115 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCGCAACGACCACCGTCACCTCCGA 174
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 62 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCTCAACGACCACCTTCTCCTCCGA 121
Query 175 TTGTGGCTACG-TGTGGTGTC-CTTATCGTTGAAAACAATCCAAACGATTCGAAGACGGC 232
|||||||| || |||||| || || |||||||||||| ||| |||| ||||| ||||||
Sbjct 122 TTGTGGCT-CGGTGTGGTATCGCT-ATCGTTGAAAACGATCGGAACGGTTCGACGACGGC 179
Query 233 GAAAACAAGTAGCGGTTACGGTTTCGATTTTAAGAGAGCCGTCGGCGGTGGAAACTCTAA 292
|||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 180 TAAAAAAAGTAGCGGTTACGGTTTCGATTTTAGGAGAGCCATCGGCGGAGGAAACTCTAA 239
Query 293 AG-CAAAAGGCAAAACCCACGAGTCTGTCACTGGTGTACGTACAGATGAACGAAACCCTA 351
|| |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AGGCAAA-GGCAAAACCAACGAGTCTGTCACTGGTGTACGTACAGATGAACCAAACCCTA 298
Query 352 ACATTGGGCTCGGTAACTCCCGGAGTACGTCTACCGGACATGGCAATACGAAACCCTTGC 411
|||||||||| ||||||||||||||||| | | ||||||| | |||| |||||||||||
Sbjct 299 ACATTGGGCTTGGTAACTCCCGGAGTAC-T-T-CCGGACACGATAATATGAAACCCTTGC 355
Query 412 CTCAGG 417
| ||||
Sbjct 356 CGCAGG 361
> Ahg915259 jgi|Araly1|915259|Al_scaffold_0008_10
Length=993
Score = 730 bits (395), Expect = 0.0
Identities = 454/483 (94%), Gaps = 2/483 (0%)
Strand=Plus/Plus
Query 759 GTCACGGGAAAATGGATGGCTAAGCAAAAGAAGATTTCCCTGTTGTTAGATGATCTTCAA 818
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 361 GTCACGGGAAAATGGATGGCCAAGCAAAAGAAGATTTCTTTGTTGTTAGATGATCTACAA 420
Query 819 AGCATCATGCAACACTTTTCATCTTATCAGCATGTTCTGGTGGCTAGAAATGATGTTAAA 878
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 421 AGCATCATGCAACACTTTTCATCTTGTCAGCATGTTCTGGTGGCTGGAAACGATGTTAAA 480
Query 879 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTATGGTCACCCCTCATGAAGATCCT 938
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 481 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTAAGATCACCCCTCATGAAGATCCT 540
Query 939 CGCCAAGCAAAAGCTGTTCTGAAAGAGGAGTGTGCTATCTGTTTCAACGACATCGTTGCT 998
|||||||||||| | | || |||||||||||||||||||||||||||||| ||| |||||
Sbjct 541 CGCCAAGCAAAATCAGCTCGGAAAGAGGAGTGTGCTATCTGTTTCAACGATATCCTTGCT 600
Query 999 GAGGGTATGTTTTCTGTTG-ACAAATGCCGTCACCGTTTTTGCTTTCAATGTGTGAAACA 1057
||| | ||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 601 GAGCGCATGTTTTCTGTTGGA-AAATGCCGTCACCGCTTTTGCTTTCAATGTGTGAAACA 659
Query 1058 GCATGTAGAGGTGAAGCTGCTTCATGGAATGGCTCCAAAATGTCCTCACGATGGCTGCAA 1117
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 660 ACATGTTGAGGTGAAGCTGCTTCATGGAATGGTTCCGAAATGTCCTCACGATGGCTGCAA 719
Query 1118 GTCTGAGCTGGTTATCGATGCATGTGGCAAGCTTTTGACTCCAAAGCTGAGTAAATTGTG 1177
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 720 GTCTGAGCTGGTTATCGATGCCTGTGGCAAGCTTTTGACTCCAAAACTGAGTAAAATGTG 779
Query 1178 GCAACAAAGACTTCAAGAGAATGCAATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 1237
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GCAACAAAGACTTAAAGAGAATGCGATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 839
Query 1238 GAG 1240
|||
Sbjct 840 GAG 842
Score = 468 bits (253), Expect = 9e-131
Identities = 330/366 (90%), Gaps = 9/366 (2%)
Strand=Plus/Plus
Query 55 TGCGGAGAGCAAGTATGGATTTCGATTCCGAGTATGCTTTTCGGTTACAGATGGAGGAGG 114
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TGCGGAAAGCAAGTATGGGTTCCGATTCCGAATATGCTTTTCGGTTACAGATGGAGGAGG 61
Query 115 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCGCAACGACCACCGTCACCTCCGA 174
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 62 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCTCAACGACCACCTTCTCCTCCGA 121
Query 175 TTGTGGCTACG-TGTGGTGTC-CTTATCGTTGAAAACAATCCAAACGATTCGAAGACGGC 232
|||||||| || |||||| || || |||||||||||| ||| |||| ||||| ||||||
Sbjct 122 TTGTGGCT-CGGTGTGGTATCGCT-ATCGTTGAAAACGATCGGAACGGTTCGACGACGGC 179
Query 233 GAAAACAAGTAGCGGTTACGGTTTCGATTTTAAGAGAGCCGTCGGCGGTGGAAACTCTAA 292
|||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 180 TAAAAAAAGTAGCGGTTACGGTTTCGATTTTAGGAGAGCCATCGGCGGAGGAAACTCTAA 239
Query 293 AG-CAAAAGGCAAAACCCACGAGTCTGTCACTGGTGTACGTACAGATGAACGAAACCCTA 351
|| |||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 240 AGGCAAA-GGCAAAACCAACGAGTCTATCACTGGTGTACGTACAGATGAACCAAACCCTA 298
Query 352 ACATTGGGCTCGGTAACTCCCGGAGTACGTCTACCGGACATGGCAATACGAAACCCTTGC 411
|||||||||| ||||||||||||||||| | | ||||||| | |||| |||||||||||
Sbjct 299 ACATTGGGCTTGGTAACTCCCGGAGTAC-T-T-CCGGACACGATAATATGAAACCCTTGC 355
Query 412 CTCAGG 417
| ||||
Sbjct 356 CGCAGG 361
Score = 250 bits (135), Expect = 3e-65
Identities = 147/153 (96%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1285 AGAGCTTACTGTCTCTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCC 1344
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGCTTACTGTCTGTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCC 900
Query 1345 TCTTCTGTGTGGACTGTAAAGTTCCGTGGCATGGAAATCTGTCCTGCACTGAGTATAAGA 1404
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TCTTCTGTGTGGACTGTAAAGTTCCGTGGCATGCAAATCTGTCCTGCACTGAGTATAAGA 960
Query 1405 AATTGCATCCTGAGCCTCCGGCAGATGATGTGA 1437
||||||||||| | ||||| |||||||| ||||
Sbjct 961 AATTGCATCCTAACCCTCCAGCAGATGACGTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81855936505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5